Wall clock time and date at job start Tue Mar 31 2020 07:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00082 * 2 1 4 4 H 1.09006 * 109.46831 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47137 * 120.00204 * 3 2 1 6 6 C 1.52997 * 109.47317 * 295.00578 * 5 3 2 7 7 C 1.53002 * 109.47470 * 240.01066 * 3 2 1 8 8 C 1.50696 * 109.47097 * 64.99499 * 7 3 2 9 9 O 1.21274 * 120.00421 * 0.02562 * 8 7 3 10 10 N 1.34779 * 119.99524 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99808 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46837 * 90.00025 * 11 10 8 13 13 H 1.08002 * 119.99925 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99991 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47119 * 59.99766 * 16 14 12 18 18 H 1.48497 * 109.47384 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46944 * 300.00106 * 16 14 12 20 20 C 1.46497 * 120.00239 * 0.02562 * 10 8 7 21 21 C 1.50697 * 109.47225 * 89.99868 * 20 10 8 22 22 C 1.34516 * 125.78737 * 89.71716 * 21 20 10 23 23 C 1.41385 * 106.83708 * 179.89076 * 22 21 20 24 24 C 1.34511 * 106.84482 * 0.37010 * 23 22 21 25 25 O 1.34303 * 125.79191 * 270.02266 * 21 20 10 26 26 H 1.08003 * 120.00232 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99815 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00232 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46929 * 174.99681 * 5 3 2 30 30 H 1.09002 * 109.46716 * 55.00487 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 6 5 3 34 34 H 1.08991 * 109.46949 * 185.00115 * 7 3 2 35 35 H 1.09000 * 109.46469 * 304.99798 * 7 3 2 36 36 H 1.09005 * 109.47126 * 209.99909 * 11 10 8 37 37 H 1.09000 * 109.47166 * 330.00484 * 11 10 8 38 38 H 0.97001 * 120.00026 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46990 * 210.00004 * 20 10 8 40 40 H 1.08996 * 109.46984 * 329.99997 * 20 10 8 41 41 H 1.07996 * 126.58491 * 0.02873 * 22 21 20 42 42 H 1.08002 * 126.57863 * 180.16613 * 23 22 21 43 43 H 1.07993 * 125.79180 * 179.75361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4305 2.4953 7 6 2.9430 1.3864 -1.2494 8 6 2.0695 1.4303 -2.4765 9 8 0.8624 1.4001 -2.3632 10 7 2.6298 1.5031 -3.7002 11 6 1.7806 1.5464 -4.8932 12 6 1.4613 2.9800 -5.2308 13 1 1.8522 3.7789 -4.6181 14 6 0.6710 3.2717 -6.3223 15 7 0.1955 2.2988 -7.0686 16 14 0.2758 5.0486 -6.7411 17 1 1.5368 5.7877 -7.0035 18 1 -0.5840 5.0926 -7.9510 19 1 -0.4391 5.6784 -5.6021 20 6 4.0879 1.5390 -3.8372 21 6 4.6161 0.1326 -3.9557 22 6 4.7835 -0.5508 -5.1022 23 6 5.3002 -1.8192 -4.7511 24 6 5.4099 -1.8380 -3.4106 25 8 4.9941 -0.6531 -2.9342 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5541 2.2877 1.2055 30 1 3.5907 0.5105 1.2950 31 1 1.4091 2.3062 2.4496 32 1 2.6834 1.4878 3.3853 33 1 1.4457 0.5288 2.5390 34 1 3.5538 2.2880 -1.2056 35 1 3.5904 0.5107 -1.2954 36 1 2.3053 1.0844 -5.7296 37 1 0.8552 1.0037 -4.7004 38 1 -0.3601 2.5040 -7.8367 39 1 4.3551 2.1039 -4.7303 40 1 4.5235 2.0180 -2.9604 41 1 4.5671 -0.1976 -6.0995 42 1 5.5546 -2.6206 -5.4290 43 1 5.7707 -2.6655 -2.8180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931269775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:24 Heat of formation + Delta-G solvation = -12.958176 kcal Electronic energy + Delta-G solvation = -23838.303470 eV Core-core repulsion = 20464.585601 eV Total energy + Delta-G solvation = -3373.717869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30774 -39.23191 -36.61251 -35.00438 -32.81798 -32.65954 -31.54278 -30.24003 -30.04042 -27.34974 -25.44640 -24.51117 -22.38609 -21.47738 -21.40946 -20.47158 -19.37737 -18.40181 -17.26031 -16.45667 -16.20783 -15.70477 -15.29644 -15.12703 -14.55702 -14.48219 -14.09195 -13.92023 -13.54686 -13.03113 -12.67763 -12.60791 -12.54186 -12.41430 -12.16916 -11.96458 -11.53876 -11.48750 -11.31591 -11.07711 -11.04862 -10.87621 -10.60395 -10.54563 -10.26053 -10.17067 -9.71500 -9.64778 -9.07779 -8.61844 -8.43300 -8.28309 -7.72821 -6.03838 -4.08837 1.91965 2.78026 2.84161 3.16669 3.31796 3.36615 3.38994 3.56409 4.02530 4.44968 4.90081 4.94200 4.99052 5.14290 5.18905 5.26684 5.29949 5.38033 5.41262 5.51540 5.58840 5.70581 5.77975 5.86765 5.96060 6.01035 6.02603 6.02864 6.06576 6.20278 6.24215 6.31851 6.34177 6.52032 6.73182 7.04554 7.07159 7.27723 7.34335 7.47202 7.54842 7.92450 8.23545 8.39464 8.91191 9.13266 9.56393 11.04194 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.006092 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.235063 B = 4595.024975 C = 6496.607957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.115 4.115 6 C -0.150 4.150 7 C -0.138 4.138 8 C 0.508 3.492 9 O -0.525 6.525 10 N -0.598 5.598 11 C 0.248 3.752 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.192 3.808 21 C -0.024 4.024 22 C -0.196 4.196 23 C -0.213 4.213 24 C -0.052 4.052 25 O -0.177 6.177 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.085 -5.690 12.152 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.098 0.902 5 C -0.152 4.152 6 C -0.207 4.207 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.401 6.401 10 N -0.330 5.330 11 C 0.129 3.871 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.067 3.933 21 C -0.075 4.075 22 C -0.216 4.216 23 C -0.232 4.232 24 C -0.120 4.120 25 O -0.073 6.073 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.270 -5.637 12.333 17.011 hybrid contribution -0.122 0.589 -0.814 1.012 sum 10.148 -5.048 11.519 16.160 Atomic orbital electron populations 1.23650 0.95939 1.01130 0.99452 1.22563 0.95908 0.96954 1.01091 1.20134 0.96560 0.96992 0.92516 0.90156 1.21531 0.97852 1.01693 0.94164 1.21757 0.99793 1.02129 0.97038 1.21804 0.98877 1.03546 0.93577 1.20404 0.88965 0.76807 0.84317 1.90671 1.14679 1.48788 1.85977 1.48328 1.04729 1.71713 1.08203 1.19267 0.90194 0.97358 0.80266 1.21395 1.31587 0.92254 1.11351 0.92460 1.24924 0.95523 0.97457 0.96086 1.69929 1.34446 1.31530 1.17373 0.86575 0.78338 0.84844 0.77758 1.20242 1.21218 1.20210 1.19863 0.82191 0.86672 1.04611 1.23353 1.02889 0.95813 0.85480 1.21702 1.05603 0.94678 0.99583 1.21820 1.06761 0.99132 0.95511 1.23914 1.05083 0.88242 0.94742 1.83996 1.63834 1.22906 1.36537 0.88594 0.89533 0.88510 0.92005 0.92059 0.92833 0.93227 0.92467 0.89577 0.89211 0.95105 0.93881 0.92687 0.86810 0.89853 0.83298 0.83836 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 13.22 29.01 0.38 -2.20 16 2 C -0.15 -2.21 6.76 -36.02 -0.24 -2.46 16 3 C -0.04 -0.62 1.82 -91.77 -0.17 -0.79 16 4 H 0.08 1.30 7.60 -51.93 -0.39 0.90 16 5 C -0.11 -1.27 5.39 -26.73 -0.14 -1.42 16 6 C -0.15 -1.54 9.73 37.16 0.36 -1.18 16 7 C -0.14 -2.11 3.72 -27.88 -0.10 -2.21 16 8 C 0.51 10.53 7.42 -10.99 -0.08 10.45 16 9 O -0.53 -12.92 13.75 5.56 0.08 -12.84 16 10 N -0.60 -12.56 2.44 -176.43 -0.43 -12.99 16 11 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 12 C -0.53 -14.70 9.39 -34.44 -0.32 -15.03 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.19 3.14 5.74 -5.20 -0.03 3.11 16 21 C -0.02 -0.38 6.85 -35.63 -0.24 -0.62 16 22 C -0.20 -3.09 10.81 -39.70 -0.43 -3.52 16 23 C -0.21 -2.87 10.91 -39.70 -0.43 -3.30 16 24 C -0.05 -0.65 12.09 29.41 0.36 -0.29 16 25 O -0.18 -2.60 9.54 5.71 0.05 -2.54 16 26 H 0.10 1.59 7.83 -52.48 -0.41 1.18 16 27 H 0.09 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.61 7.38 -51.93 -0.38 0.22 16 34 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 35 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.11 1.82 8.07 -51.93 -0.42 1.41 16 40 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 41 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -32.69 360.45 -7.22 -39.91 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.84 Total: 3.47 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.22 Total: -11.38 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.31 Total: -38.72 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.13 Total: -15.39 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.69 -7.22 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.951 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds