Wall clock time and date at job start Tue Mar 31 2020 07:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00082 * 2 1 4 4 H 1.09006 * 109.46831 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47137 * 120.00204 * 3 2 1 6 6 C 1.52997 * 109.47317 * 295.00578 * 5 3 2 7 7 C 1.53002 * 109.47470 * 240.01066 * 3 2 1 8 8 C 1.50696 * 109.47097 * 64.99499 * 7 3 2 9 9 O 1.21274 * 120.00421 * 0.02562 * 8 7 3 10 10 N 1.34779 * 119.99524 * 180.02562 * 8 7 3 11 11 C 1.46504 * 119.99808 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46837 * 90.00025 * 11 10 8 13 13 H 1.08002 * 119.99925 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99991 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47119 * 59.99766 * 16 14 12 18 18 H 1.48497 * 109.47384 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46944 * 300.00106 * 16 14 12 20 20 C 1.46497 * 120.00239 * 0.02562 * 10 8 7 21 21 C 1.50697 * 109.47225 * 89.99868 * 20 10 8 22 22 C 1.34516 * 125.78737 * 89.71716 * 21 20 10 23 23 C 1.41385 * 106.83708 * 179.89076 * 22 21 20 24 24 C 1.34511 * 106.84482 * 0.37010 * 23 22 21 25 25 O 1.34303 * 125.79191 * 270.02266 * 21 20 10 26 26 H 1.08003 * 120.00232 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99815 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00232 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.46929 * 174.99681 * 5 3 2 30 30 H 1.09002 * 109.46716 * 55.00487 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 6 5 3 34 34 H 1.08991 * 109.46949 * 185.00115 * 7 3 2 35 35 H 1.09000 * 109.46469 * 304.99798 * 7 3 2 36 36 H 1.09005 * 109.47126 * 209.99909 * 11 10 8 37 37 H 1.09000 * 109.47166 * 330.00484 * 11 10 8 38 38 H 0.97001 * 120.00026 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46990 * 210.00004 * 20 10 8 40 40 H 1.08996 * 109.46984 * 329.99997 * 20 10 8 41 41 H 1.07996 * 126.58491 * 0.02873 * 22 21 20 42 42 H 1.08002 * 126.57863 * 180.16613 * 23 22 21 43 43 H 1.07993 * 125.79180 * 179.75361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4305 2.4953 7 6 2.9430 1.3864 -1.2494 8 6 2.0695 1.4303 -2.4765 9 8 0.8624 1.4001 -2.3632 10 7 2.6298 1.5031 -3.7002 11 6 1.7806 1.5464 -4.8932 12 6 1.4613 2.9800 -5.2308 13 1 1.8522 3.7789 -4.6181 14 6 0.6710 3.2717 -6.3223 15 7 0.1955 2.2988 -7.0686 16 14 0.2758 5.0486 -6.7411 17 1 1.5368 5.7877 -7.0035 18 1 -0.5840 5.0926 -7.9510 19 1 -0.4391 5.6784 -5.6021 20 6 4.0879 1.5390 -3.8372 21 6 4.6161 0.1326 -3.9557 22 6 4.7835 -0.5508 -5.1022 23 6 5.3002 -1.8192 -4.7511 24 6 5.4099 -1.8380 -3.4106 25 8 4.9941 -0.6531 -2.9342 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5541 2.2877 1.2055 30 1 3.5907 0.5105 1.2950 31 1 1.4091 2.3062 2.4496 32 1 2.6834 1.4878 3.3853 33 1 1.4457 0.5288 2.5390 34 1 3.5538 2.2880 -1.2056 35 1 3.5904 0.5107 -1.2954 36 1 2.3053 1.0844 -5.7296 37 1 0.8552 1.0037 -4.7004 38 1 -0.3601 2.5040 -7.8367 39 1 4.3551 2.1039 -4.7303 40 1 4.5235 2.0180 -2.9604 41 1 4.5671 -0.1976 -6.0995 42 1 5.5546 -2.6206 -5.4290 43 1 5.7707 -2.6655 -2.8180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931269775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:23 Heat of formation + Delta-G solvation = -31.304046 kcal Electronic energy + Delta-G solvation = -23839.099007 eV Core-core repulsion = 20464.585601 eV Total energy + Delta-G solvation = -3374.513406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.41844 -40.80268 -37.85832 -36.63752 -34.85670 -33.83567 -32.59159 -31.71793 -31.27036 -29.13752 -26.76569 -26.01671 -24.08663 -22.61185 -22.47041 -21.65134 -20.58358 -19.89160 -18.80837 -18.15418 -17.71983 -17.27738 -16.66067 -16.39788 -16.24949 -15.72642 -15.42315 -15.08177 -14.69235 -14.42783 -14.28629 -13.94434 -13.79389 -13.72668 -13.53699 -13.30017 -13.03627 -12.95820 -12.81226 -12.64678 -12.54970 -12.21495 -12.06763 -12.02128 -11.74941 -11.62899 -11.32968 -10.80781 -10.63210 -10.59946 -9.98152 -9.60722 -9.33551 -8.21147 -6.35736 0.78478 1.37494 1.41606 1.48727 1.56244 1.70811 1.86079 2.17664 2.36862 2.52924 3.08963 3.69743 3.85874 3.86922 3.95525 4.10111 4.18394 4.37475 4.37981 4.42975 4.48764 4.59533 4.61577 4.68349 4.82893 4.94890 5.01192 5.03986 5.06893 5.08586 5.13246 5.20904 5.24350 5.26242 5.43216 5.50359 5.54675 5.64071 5.81596 5.84645 6.07225 6.08952 6.24973 6.70135 6.77676 7.30403 7.52035 8.86100 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.006092 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.235063 B = 4595.024975 C = 6496.607957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.144 4.144 3 C -0.043 4.043 4 H 0.055 0.945 5 C -0.107 4.107 6 C -0.150 4.150 7 C -0.123 4.123 8 C 0.496 3.504 9 O -0.575 6.575 10 N -0.603 5.603 11 C 0.268 3.732 12 C -0.540 4.540 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.966 3.034 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.190 3.810 21 C -0.042 4.042 22 C -0.215 4.215 23 C -0.231 4.231 24 C -0.033 4.033 25 O -0.179 6.179 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.018 0.982 37 H -0.008 1.008 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.165 0.835 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.690 -5.596 13.761 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.162 4.162 3 C -0.062 4.062 4 H 0.073 0.927 5 C -0.144 4.144 6 C -0.207 4.207 7 C -0.162 4.162 8 C 0.286 3.714 9 O -0.454 6.454 10 N -0.334 5.334 11 C 0.147 3.853 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.791 3.209 17 H -0.182 1.182 18 H -0.206 1.206 19 H -0.204 1.204 20 C 0.067 3.933 21 C -0.093 4.093 22 C -0.235 4.235 23 C -0.250 4.250 24 C -0.101 4.101 25 O -0.075 6.075 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.036 0.964 37 H 0.010 0.990 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 12.930 -5.541 13.955 19.815 hybrid contribution -0.906 0.447 -1.331 1.671 sum 12.024 -5.094 12.624 18.163 Atomic orbital electron populations 1.23667 0.96625 1.00761 1.01136 1.22814 0.95770 0.98013 0.99560 1.20166 0.96557 0.95627 0.93869 0.92669 1.21497 0.97458 1.03223 0.92241 1.21754 0.99873 1.01440 0.97646 1.21800 0.98185 1.05635 0.90600 1.21468 0.89107 0.75371 0.85473 1.90650 1.17155 1.50892 1.86748 1.48299 1.06495 1.71654 1.06953 1.18646 0.88932 0.95810 0.81945 1.21685 1.31742 0.92990 1.11461 0.92409 1.25849 0.95219 1.02042 0.95943 1.70061 1.35086 1.33882 1.17888 0.85486 0.78759 0.79336 0.77346 1.18244 1.20620 1.20387 1.20024 0.79239 0.87783 1.06215 1.23046 1.04432 0.95915 0.85886 1.21893 1.06041 0.96258 0.99313 1.22122 1.07348 0.98767 0.96762 1.24822 1.02428 0.87938 0.94877 1.83980 1.63893 1.23579 1.36068 0.90484 0.88610 0.86989 0.90419 0.90455 0.93645 0.91193 0.93191 0.86700 0.87436 0.96356 0.98986 0.92525 0.87133 0.86274 0.84578 0.81744 0.74036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.99 13.22 67.78 0.90 -5.09 16 2 C -0.14 -4.23 6.76 25.65 0.17 -4.06 16 3 C -0.04 -1.18 1.82 -11.54 -0.02 -1.20 16 4 H 0.05 1.79 7.60 -2.38 -0.02 1.78 16 5 C -0.11 -2.03 5.39 30.59 0.16 -1.87 16 6 C -0.15 -2.75 9.73 71.98 0.70 -2.05 16 7 C -0.12 -3.50 3.72 29.85 0.11 -3.38 16 8 C 0.50 20.74 7.42 87.66 0.65 21.39 16 9 O -0.58 -29.52 13.75 -3.01 -0.04 -29.56 16 10 N -0.60 -25.77 2.44 -830.50 -2.03 -27.79 16 11 C 0.27 14.60 5.16 85.63 0.44 15.05 16 12 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 13 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 14 C 0.01 0.48 5.46 84.65 0.46 0.95 16 15 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 16 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 20 C 0.19 6.08 5.74 85.63 0.49 6.58 16 21 C -0.04 -1.28 6.85 24.83 0.17 -1.11 16 22 C -0.21 -6.74 10.81 22.19 0.24 -6.50 16 23 C -0.23 -5.76 10.91 22.19 0.24 -5.52 16 24 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 25 O -0.18 -4.74 9.54 -2.50 -0.02 -4.76 16 26 H 0.08 2.74 7.83 -2.91 -0.02 2.72 16 27 H 0.10 2.82 8.06 -2.91 -0.02 2.79 16 28 H 0.11 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.98 7.38 -2.38 -0.02 0.97 16 34 H 0.11 2.64 7.40 -2.39 -0.02 2.63 16 35 H 0.11 2.74 6.92 -2.39 -0.02 2.72 16 36 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 37 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.11 3.55 8.07 -2.39 -0.02 3.53 16 40 H 0.12 2.90 6.44 -2.39 -0.02 2.88 16 41 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -74.94 360.45 6.96 -67.98 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.97 Total: 21.13 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.77 Total: -17.48 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.74 Total: -84.28 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.07 Total: -34.32 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -74.94 6.96 -67.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931269775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.674 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds