Wall clock time and date at job start Tue Mar 31 2020 07:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 H 1.08994 * 109.47063 * 55.00738 * 3 2 1 5 5 O 1.42897 * 109.46883 * 295.00157 * 3 2 1 6 6 C 1.53004 * 109.46964 * 175.00432 * 3 2 1 7 7 C 1.52998 * 109.47084 * 185.00326 * 6 3 2 8 8 N 1.46493 * 109.47247 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00356 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99510 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00342 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47159 * 59.99777 * 11 9 8 13 13 C 1.50700 * 109.46825 * 299.99616 * 11 9 8 14 14 H 1.07995 * 120.00121 * 324.88008 * 13 11 9 15 15 C 1.37873 * 119.99885 * 144.88038 * 13 11 9 16 16 N 1.31515 * 120.00280 * 5.20031 * 15 13 11 17 17 Si 1.86806 * 120.00014 * 185.19152 * 15 13 11 18 18 H 1.48496 * 109.46873 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46881 * 120.00178 * 17 15 13 20 20 H 1.48496 * 109.47361 * 240.00384 * 17 15 13 21 21 C 1.50698 * 109.46994 * 179.97438 * 11 9 8 22 22 C 1.38239 * 119.99920 * 66.01311 * 21 11 9 23 23 C 1.38233 * 119.99831 * 179.81098 * 22 21 11 24 24 C 1.38240 * 120.00249 * 0.39099 * 23 22 21 25 25 C 1.38233 * 119.99591 * 359.86028 * 24 23 22 26 26 C 1.38236 * 119.99864 * 246.28069 * 21 11 9 27 27 H 1.09007 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46942 * 299.99616 * 1 2 3 29 29 H 1.08993 * 109.47726 * 59.99875 * 1 2 3 30 30 H 1.09006 * 109.46942 * 240.00384 * 2 1 3 31 31 H 1.08993 * 109.47726 * 120.00125 * 2 1 3 32 32 H 0.96696 * 114.00363 * 299.99757 * 5 3 2 33 33 H 1.08992 * 109.47313 * 65.00014 * 6 3 2 34 34 H 1.09003 * 109.46858 * 304.99900 * 6 3 2 35 35 H 1.08998 * 109.47291 * 59.99212 * 7 6 3 36 36 H 1.09003 * 109.46926 * 299.99533 * 7 6 3 37 37 H 0.97003 * 119.99852 * 0.27232 * 8 7 6 38 38 H 0.96995 * 120.00419 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00285 * 359.97438 * 22 21 11 40 40 H 1.07997 * 120.00057 * 180.23224 * 23 22 21 41 41 H 1.07997 * 119.99980 * 179.83868 * 24 23 22 42 42 H 1.08001 * 119.99832 * 179.97438 * 25 24 23 43 43 H 1.07991 * 120.00183 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6618 2.0814 -1.2210 6 6 3.5648 1.4444 0.1256 7 6 4.0645 2.8850 0.2511 8 7 5.5244 2.8868 0.3720 9 6 6.1890 4.0528 0.4956 10 8 5.5784 5.1006 0.5063 11 6 7.6909 4.0546 0.6194 12 1 8.1290 3.5944 -0.2662 13 6 8.0950 3.2738 1.8434 14 1 7.4787 3.3022 2.7298 15 6 9.2513 2.5231 1.8315 16 7 10.0542 2.5685 0.7908 17 14 9.6779 1.4415 3.2936 18 1 8.6192 1.5667 4.3274 19 1 9.7729 0.0269 2.8518 20 1 10.9802 1.8707 3.8636 21 6 8.1830 5.4736 0.7431 22 6 7.8608 6.2220 1.8598 23 6 8.3154 7.5223 1.9751 24 6 9.0855 8.0770 0.9700 25 6 9.4033 7.3303 -0.1491 26 6 8.9519 6.0287 -0.2627 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0140 1.6543 -2.0139 33 1 4.0029 0.9837 -0.7597 34 1 3.8571 0.8801 1.0112 35 1 3.6263 3.3458 1.1364 36 1 3.7722 3.4494 -0.6345 37 1 6.0131 2.0490 0.3595 38 1 10.8675 2.0401 0.7823 39 1 7.2561 5.7899 2.6434 40 1 8.0668 8.1058 2.8492 41 1 9.4385 9.0938 1.0589 42 1 10.0046 7.7638 -0.9345 43 1 9.2003 5.4453 -1.1368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137314764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:13 Heat of formation + Delta-G solvation = -91.696063 kcal Electronic energy + Delta-G solvation = -22975.112978 eV Core-core repulsion = 19597.980778 eV Total energy + Delta-G solvation = -3377.132200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17366 -38.33270 -37.55656 -34.34550 -33.62824 -32.96793 -31.10908 -30.43976 -29.89819 -27.46147 -25.53832 -23.80845 -22.03025 -21.55340 -21.51049 -20.65929 -19.20519 -16.82099 -16.45182 -16.27921 -15.94444 -15.70309 -15.40467 -14.63713 -14.47696 -14.40540 -13.91197 -13.81778 -13.45093 -12.97345 -12.73003 -12.51088 -12.40320 -12.27247 -12.10821 -11.65591 -11.58887 -11.51290 -11.19021 -11.11755 -11.04212 -10.94701 -10.83294 -10.39198 -10.24085 -10.09487 -9.92961 -9.39957 -8.77940 -8.58309 -8.27691 -7.90615 -7.56672 -6.27766 -4.34000 2.41764 2.44541 3.16313 3.26036 3.29320 3.76060 3.95469 4.27599 4.31721 4.61682 4.79824 4.86341 4.94943 5.09349 5.11020 5.22421 5.39378 5.55068 5.63083 5.73798 5.75521 5.76458 5.82595 5.92761 5.95264 6.04351 6.14480 6.24731 6.26521 6.44686 6.54028 6.63999 6.88814 7.01234 7.18406 7.27409 7.40612 7.48573 7.54745 7.63121 7.78024 7.98923 8.10123 8.42293 8.70823 9.27626 9.33339 10.80574 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004306 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.450830 B = 6500.621025 C = 8000.641609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.100 0.900 5 O -0.559 6.559 6 C -0.164 4.164 7 C 0.125 3.875 8 N -0.732 5.732 9 C 0.526 3.474 10 O -0.567 6.567 11 C 0.050 3.950 12 H 0.088 0.912 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.878 5.878 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.008 4.008 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.373 0.627 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.403 0.597 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 -4.272 -2.556 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.118 0.882 5 O -0.364 6.364 6 C -0.202 4.202 7 C 0.001 3.999 8 N -0.385 5.385 9 C 0.315 3.685 10 O -0.446 6.446 11 C 0.029 3.971 12 H 0.106 0.894 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.513 5.513 17 Si 0.724 3.276 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.009 4.009 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.220 0.780 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.888 -3.199 -2.207 11.561 hybrid contribution 1.042 -1.481 0.521 1.885 sum -9.845 -4.680 -1.686 11.031 Atomic orbital electron populations 1.21707 0.95251 1.01272 1.02410 1.22245 0.96991 0.97311 1.02831 1.21915 0.92697 0.92560 0.87871 0.88225 1.86600 1.76847 1.57364 1.15625 1.22529 0.96420 0.97803 1.03458 1.21085 0.81739 0.95353 1.01712 1.45936 1.06109 1.10091 1.76339 1.21635 0.91710 0.82275 0.72872 1.90586 1.70963 1.31913 1.51165 1.18124 0.86454 0.91089 1.01477 0.89443 1.20730 1.08522 1.27788 0.98035 0.91909 1.24975 0.95700 0.96276 0.96214 1.69930 1.12115 1.39816 1.29486 0.86447 0.78661 0.80006 0.82471 1.19518 1.20730 1.20786 1.20016 0.93754 0.94984 0.92169 1.20817 0.98588 0.93223 0.97738 1.20948 0.99810 0.95944 0.98585 1.20789 1.01510 0.99069 0.95391 1.20897 1.01232 0.94999 0.97899 1.20980 0.99170 0.94564 0.98922 0.93014 0.92744 0.92106 0.91647 0.90971 0.78033 0.91020 0.90278 0.92494 0.91753 0.76206 0.92433 0.87187 0.87625 0.87739 0.87586 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.81 37.16 0.36 -0.82 16 2 C -0.16 -1.26 5.61 -26.73 -0.15 -1.41 16 3 C 0.11 1.08 2.97 -26.73 -0.08 1.00 16 4 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 5 O -0.56 -6.05 12.41 -35.23 -0.44 -6.48 16 6 C -0.16 -1.81 5.01 -26.73 -0.13 -1.95 16 7 C 0.13 1.94 5.57 -4.05 -0.02 1.92 16 8 N -0.73 -13.48 5.45 -60.30 -0.33 -13.81 16 9 C 0.53 11.88 7.04 -10.99 -0.08 11.80 16 10 O -0.57 -14.20 15.42 5.55 0.09 -14.12 16 11 C 0.05 1.19 2.37 -94.08 -0.22 0.97 16 12 H 0.09 2.21 7.13 -51.93 -0.37 1.84 16 13 C -0.51 -12.84 7.47 -34.44 -0.26 -13.09 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 16 N -0.88 -23.10 12.84 55.43 0.71 -22.39 16 17 Si 0.90 19.75 29.54 -169.99 -5.02 14.72 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 22 C -0.09 -1.97 8.31 -39.58 -0.33 -2.30 16 23 C -0.13 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 26 C -0.12 -2.64 9.67 -39.58 -0.38 -3.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.37 2.80 9.05 45.56 0.41 3.21 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 37 H 0.40 6.96 8.36 -40.82 -0.34 6.62 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.11 2.57 7.90 -52.49 -0.41 2.15 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.40 7.95 -52.49 -0.42 1.98 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -30.14 362.17 -8.70 -38.85 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.14 Total: 12.99 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.03 Total: -15.22 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.38 Total: -36.20 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.35 Total: -20.60 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.14 -8.70 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137314764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.849 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds