Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46953 * 2 1 4 4 H 1.08994 * 109.47063 * 55.00738 * 3 2 1 5 5 O 1.42897 * 109.46883 * 295.00157 * 3 2 1 6 6 C 1.53004 * 109.46964 * 175.00432 * 3 2 1 7 7 C 1.52998 * 109.47084 * 185.00326 * 6 3 2 8 8 N 1.46493 * 109.47247 * 179.97438 * 7 6 3 9 9 C 1.34779 * 120.00356 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99510 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00342 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47159 * 59.99777 * 11 9 8 13 13 C 1.50700 * 109.46825 * 299.99616 * 11 9 8 14 14 H 1.07995 * 120.00121 * 324.88008 * 13 11 9 15 15 C 1.37873 * 119.99885 * 144.88038 * 13 11 9 16 16 N 1.31515 * 120.00280 * 5.20031 * 15 13 11 17 17 Si 1.86806 * 120.00014 * 185.19152 * 15 13 11 18 18 H 1.48496 * 109.46873 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46881 * 120.00178 * 17 15 13 20 20 H 1.48496 * 109.47361 * 240.00384 * 17 15 13 21 21 C 1.50698 * 109.46994 * 179.97438 * 11 9 8 22 22 C 1.38239 * 119.99920 * 66.01311 * 21 11 9 23 23 C 1.38233 * 119.99831 * 179.81098 * 22 21 11 24 24 C 1.38240 * 120.00249 * 0.39099 * 23 22 21 25 25 C 1.38233 * 119.99591 * 359.86028 * 24 23 22 26 26 C 1.38236 * 119.99864 * 246.28069 * 21 11 9 27 27 H 1.09007 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46942 * 299.99616 * 1 2 3 29 29 H 1.08993 * 109.47726 * 59.99875 * 1 2 3 30 30 H 1.09006 * 109.46942 * 240.00384 * 2 1 3 31 31 H 1.08993 * 109.47726 * 120.00125 * 2 1 3 32 32 H 0.96696 * 114.00363 * 299.99757 * 5 3 2 33 33 H 1.08992 * 109.47313 * 65.00014 * 6 3 2 34 34 H 1.09003 * 109.46858 * 304.99900 * 6 3 2 35 35 H 1.08998 * 109.47291 * 59.99212 * 7 6 3 36 36 H 1.09003 * 109.46926 * 299.99533 * 7 6 3 37 37 H 0.97003 * 119.99852 * 0.27232 * 8 7 6 38 38 H 0.96995 * 120.00419 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.00285 * 359.97438 * 22 21 11 40 40 H 1.07997 * 120.00057 * 180.23224 * 23 22 21 41 41 H 1.07997 * 119.99980 * 179.83868 * 24 23 22 42 42 H 1.08001 * 119.99832 * 179.97438 * 25 24 23 43 43 H 1.07991 * 120.00183 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6618 2.0814 -1.2210 6 6 3.5648 1.4444 0.1256 7 6 4.0645 2.8850 0.2511 8 7 5.5244 2.8868 0.3720 9 6 6.1890 4.0528 0.4956 10 8 5.5784 5.1006 0.5063 11 6 7.6909 4.0546 0.6194 12 1 8.1290 3.5944 -0.2662 13 6 8.0950 3.2738 1.8434 14 1 7.4787 3.3022 2.7298 15 6 9.2513 2.5231 1.8315 16 7 10.0542 2.5685 0.7908 17 14 9.6779 1.4415 3.2936 18 1 8.6192 1.5667 4.3274 19 1 9.7729 0.0269 2.8518 20 1 10.9802 1.8707 3.8636 21 6 8.1830 5.4736 0.7431 22 6 7.8608 6.2220 1.8598 23 6 8.3154 7.5223 1.9751 24 6 9.0855 8.0770 0.9700 25 6 9.4033 7.3303 -0.1491 26 6 8.9519 6.0287 -0.2627 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0140 1.6543 -2.0139 33 1 4.0029 0.9837 -0.7597 34 1 3.8571 0.8801 1.0112 35 1 3.6263 3.3458 1.1364 36 1 3.7722 3.4494 -0.6345 37 1 6.0131 2.0490 0.3595 38 1 10.8675 2.0401 0.7823 39 1 7.2561 5.7899 2.6434 40 1 8.0668 8.1058 2.8492 41 1 9.4385 9.0938 1.0589 42 1 10.0046 7.7638 -0.9345 43 1 9.2003 5.4453 -1.1368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137314764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -111.142026 kcal Electronic energy + Delta-G solvation = -22975.956218 eV Core-core repulsion = 19597.980778 eV Total energy + Delta-G solvation = -3377.975441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86337 -39.51035 -38.93317 -35.79926 -35.50859 -33.72413 -32.91123 -31.62296 -31.53917 -29.12660 -26.75508 -25.53297 -23.25230 -23.07588 -22.42135 -22.14364 -20.89996 -18.68424 -17.82477 -17.57188 -17.29826 -16.85081 -16.80723 -16.25162 -15.98354 -15.75032 -15.40976 -15.14627 -14.64064 -14.53514 -14.08695 -13.92236 -13.88297 -13.48576 -13.38958 -13.29512 -12.88436 -12.83808 -12.76213 -12.48368 -12.20767 -12.17100 -11.93924 -11.80926 -11.69216 -11.63308 -11.26532 -10.90459 -10.69243 -10.38884 -9.88008 -9.56197 -9.25779 -8.21177 -6.33325 0.75335 0.80360 1.41327 1.45265 1.55474 1.95419 2.42758 2.53113 3.07782 3.26546 3.51033 3.77895 3.97403 4.10290 4.22036 4.28362 4.29757 4.30742 4.41150 4.50835 4.54243 4.62015 4.67244 4.78915 4.87067 4.95113 4.97118 5.05255 5.10361 5.13223 5.14901 5.36349 5.37082 5.42775 5.44556 5.64784 5.69899 5.78015 5.82877 5.94965 6.23467 6.40567 6.70981 6.80807 6.89180 7.34048 7.55766 8.87159 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.004306 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.450830 B = 6500.621025 C = 8000.641609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.113 3.887 4 H 0.090 0.910 5 O -0.577 6.577 6 C -0.151 4.151 7 C 0.126 3.874 8 N -0.719 5.719 9 C 0.522 3.478 10 O -0.597 6.597 11 C 0.052 3.948 12 H 0.067 0.933 13 C -0.516 4.516 14 H 0.052 0.948 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.287 1.287 21 C -0.038 4.038 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.387 0.613 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.410 0.590 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -4.496 -2.263 11.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.053 3.947 4 H 0.108 0.892 5 O -0.384 6.384 6 C -0.189 4.189 7 C 0.003 3.997 8 N -0.370 5.370 9 C 0.311 3.689 10 O -0.478 6.478 11 C 0.031 3.969 12 H 0.085 0.915 13 C -0.554 4.554 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.542 5.542 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.213 1.213 21 C -0.039 4.039 22 C -0.131 4.131 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.246 0.754 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.836 -3.464 -1.928 11.538 hybrid contribution 1.001 -1.327 0.388 1.707 sum -9.835 -4.791 -1.540 11.047 Atomic orbital electron populations 1.21703 0.95152 1.01872 1.01903 1.22182 0.96991 0.95759 1.03778 1.21870 0.91539 0.93794 0.87448 0.89209 1.86570 1.77140 1.58226 1.16507 1.22472 0.97318 0.94531 1.04606 1.21216 0.79619 0.98427 1.00481 1.45871 1.07499 1.09114 1.74541 1.21478 0.91450 0.82962 0.73005 1.90550 1.71300 1.33129 1.52867 1.18020 0.87280 0.91467 1.00151 0.91519 1.20761 1.08562 1.28103 0.97942 0.92991 1.25608 0.95455 0.97276 0.98422 1.70027 1.12492 1.40645 1.31041 0.85528 0.77857 0.78864 0.79561 1.19345 1.19490 1.21307 1.20144 0.95090 0.95268 0.93381 1.20851 0.99883 0.94890 0.97471 1.21330 0.99075 0.94917 1.00034 1.21276 0.99999 1.00754 0.94151 1.21314 1.00506 0.93835 0.99078 1.21145 1.00022 0.96175 0.98776 0.91844 0.93136 0.92778 0.90440 0.90250 0.76425 0.89508 0.89371 0.93815 0.92923 0.75446 0.92332 0.88824 0.84652 0.83460 0.84166 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.81 71.98 0.71 -1.43 16 2 C -0.15 -2.11 5.61 30.60 0.17 -1.94 16 3 C 0.11 2.12 2.97 30.60 0.09 2.21 16 4 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 5 O -0.58 -11.98 12.41 -148.98 -1.85 -13.82 16 6 C -0.15 -3.17 5.01 30.59 0.15 -3.02 16 7 C 0.13 3.95 5.57 86.38 0.48 4.43 16 8 N -0.72 -27.06 5.45 -463.07 -2.53 -29.58 16 9 C 0.52 24.51 7.04 87.66 0.62 25.12 16 10 O -0.60 -31.03 15.42 -3.05 -0.05 -31.08 16 11 C 0.05 2.60 2.37 -13.03 -0.03 2.57 16 12 H 0.07 3.54 7.13 -2.39 -0.02 3.52 16 13 C -0.52 -26.49 7.47 25.60 0.19 -26.30 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 15 C 0.03 1.75 5.45 84.65 0.46 2.21 16 16 N -0.91 -48.37 12.84 21.45 0.28 -48.10 16 17 Si 0.96 40.56 29.54 68.60 2.03 42.58 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 21 C -0.04 -1.87 4.30 -19.87 -0.09 -1.95 16 22 C -0.11 -5.30 8.31 22.27 0.18 -5.12 16 23 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 26 C -0.14 -6.48 9.67 22.27 0.22 -6.27 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.39 5.32 9.05 -74.06 -0.67 4.65 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 37 H 0.41 14.28 8.36 -92.71 -0.78 13.51 16 38 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 39 H 0.09 4.57 7.90 -2.91 -0.02 4.54 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.11 4.78 7.95 -2.92 -0.02 4.75 16 Total: -1.00 -66.17 362.17 1.26 -64.91 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.44 Total: 39.22 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.83 Total: -24.13 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.25 Total: -77.68 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.90 Total: -44.91 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.58 kcal Total: -66.17 1.26 -64.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137314764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.234 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds