Wall clock time and date at job start Tue Mar 31 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08993 * 109.47454 * 305.00296 * 3 2 1 5 5 O 1.42902 * 109.46895 * 65.00178 * 3 2 1 6 6 C 1.52996 * 109.47049 * 184.99643 * 3 2 1 7 7 C 1.52997 * 109.47230 * 175.00144 * 6 3 2 8 8 N 1.46497 * 109.47509 * 180.02562 * 7 6 3 9 9 C 1.34775 * 120.00313 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00018 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00169 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.46540 * 60.00161 * 11 9 8 13 13 C 1.50696 * 109.47115 * 300.00083 * 11 9 8 14 14 H 1.08001 * 120.00305 * 324.88344 * 13 11 9 15 15 C 1.37875 * 119.99875 * 144.87788 * 13 11 9 16 16 N 1.31508 * 120.00153 * 5.19948 * 15 13 11 17 17 Si 1.86797 * 120.00097 * 185.19630 * 15 13 11 18 18 H 1.48508 * 109.47024 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47358 * 120.00164 * 17 15 13 20 20 H 1.48499 * 109.47481 * 240.00552 * 17 15 13 21 21 C 1.50697 * 109.46981 * 179.97438 * 11 9 8 22 22 C 1.38242 * 120.00019 * 66.01546 * 21 11 9 23 23 C 1.38235 * 120.00028 * 179.81113 * 22 21 11 24 24 C 1.38242 * 119.99768 * 0.38953 * 23 22 21 25 25 C 1.38226 * 119.99866 * 359.86424 * 24 23 22 26 26 C 1.38232 * 120.00172 * 246.28572 * 21 11 9 27 27 H 1.09004 * 109.47072 * 59.99673 * 1 2 3 28 28 H 1.08997 * 109.46823 * 299.99643 * 1 2 3 29 29 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47058 * 120.00333 * 2 1 3 31 31 H 1.08997 * 109.46823 * 240.00357 * 2 1 3 32 32 H 0.96705 * 114.00113 * 59.99390 * 5 3 2 33 33 H 1.09001 * 109.47703 * 295.00551 * 6 3 2 34 34 H 1.09007 * 109.46969 * 55.00589 * 6 3 2 35 35 H 1.09001 * 109.47109 * 300.00770 * 7 6 3 36 36 H 1.09004 * 109.47055 * 59.99890 * 7 6 3 37 37 H 0.96994 * 119.99548 * 0.02562 * 8 7 6 38 38 H 0.97005 * 120.00383 * 180.02562 * 16 15 13 39 39 H 1.07998 * 119.99952 * 359.97438 * 22 21 11 40 40 H 1.07993 * 119.99897 * 180.23387 * 23 22 21 41 41 H 1.07995 * 119.99496 * 179.83930 * 24 23 22 42 42 H 1.08006 * 119.99631 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99797 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 3.5649 1.4443 -0.1256 7 6 4.0646 2.8849 -0.2510 8 7 5.5246 2.8866 -0.3719 9 6 6.1893 4.0527 -0.4944 10 8 5.5787 5.1006 -0.5040 11 6 7.6912 4.0545 -0.6182 12 1 7.9833 3.4905 -1.5040 13 6 8.2969 3.4170 0.6056 14 1 7.8332 3.5538 1.5714 15 6 9.4429 2.6589 0.4924 16 7 10.0648 2.5757 -0.6634 17 14 10.1124 1.7500 1.9807 18 1 9.2353 2.0043 3.1518 19 1 10.1477 0.2929 1.6963 20 1 11.4861 2.2298 2.2771 21 6 8.1833 5.4735 -0.7418 22 6 8.0404 6.3494 0.3181 23 6 8.4953 7.6499 0.2061 24 6 9.0859 8.0768 -0.9687 25 6 9.2240 7.2024 -2.0302 26 6 8.7726 5.9008 -1.9169 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0142 1.6541 2.0140 33 1 4.0030 0.9835 0.7597 34 1 3.8571 0.8800 -1.0113 35 1 3.6264 3.3457 -1.1363 36 1 3.7723 3.4492 0.6346 37 1 6.0128 2.0486 -0.3638 38 1 10.8709 2.0420 -0.7432 39 1 7.5757 6.0169 1.2345 40 1 8.3871 8.3331 1.0354 41 1 9.4390 9.0936 -1.0570 42 1 9.6851 7.5361 -2.9482 43 1 8.8806 5.2176 -2.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137314765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:15 Heat of formation + Delta-G solvation = -91.694778 kcal Electronic energy + Delta-G solvation = -22986.806152 eV Core-core repulsion = 19609.674007 eV Total energy + Delta-G solvation = -3377.132145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.17244 -38.32641 -37.55484 -34.34321 -33.62815 -32.96281 -31.10911 -30.43931 -29.89757 -27.46073 -25.53831 -23.80732 -22.03024 -21.55303 -21.50493 -20.65877 -19.20472 -16.80603 -16.50989 -16.23058 -15.89512 -15.72969 -15.41779 -14.68254 -14.49176 -14.29253 -14.01330 -13.74855 -13.48271 -12.88011 -12.81811 -12.50547 -12.40874 -12.25182 -12.10588 -11.67180 -11.58319 -11.50211 -11.19084 -11.11751 -11.04406 -10.94531 -10.83029 -10.39136 -10.23829 -10.09072 -9.92782 -9.39891 -8.77951 -8.58230 -8.27679 -7.90576 -7.56660 -6.27736 -4.33924 2.41795 2.44573 3.16307 3.26058 3.29289 3.75663 3.96094 4.27599 4.32457 4.61716 4.79787 4.86452 4.95004 5.09331 5.11510 5.22394 5.39364 5.54786 5.62871 5.73370 5.75533 5.76334 5.82708 5.92583 5.94701 6.04227 6.14737 6.25206 6.26688 6.45013 6.54114 6.64065 6.88845 7.01277 7.18414 7.27480 7.40658 7.48660 7.56029 7.63187 7.78095 7.98981 8.10216 8.42361 8.70902 9.27651 9.33376 10.80602 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.004295 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.644392 B = 6517.161457 C = 7918.878363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.099 0.901 5 O -0.559 6.559 6 C -0.164 4.164 7 C 0.125 3.875 8 N -0.732 5.732 9 C 0.526 3.474 10 O -0.567 6.567 11 C 0.050 3.950 12 H 0.088 0.912 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.878 5.878 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.008 4.008 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.373 0.627 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.403 0.597 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -4.422 -0.001 11.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.117 0.883 5 O -0.364 6.364 6 C -0.202 4.202 7 C 0.001 3.999 8 N -0.385 5.385 9 C 0.315 3.685 10 O -0.446 6.446 11 C 0.029 3.971 12 H 0.105 0.895 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.513 5.513 17 Si 0.724 3.276 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.009 4.009 22 C -0.104 4.104 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.137 4.137 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.221 0.779 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.116 -3.359 -0.521 11.624 hybrid contribution 1.177 -1.386 1.103 2.126 sum -9.940 -4.744 0.582 11.029 Atomic orbital electron populations 1.21708 0.95252 1.01268 1.02410 1.22245 0.96988 0.97326 1.02825 1.21905 0.92676 0.92537 0.87906 0.88276 1.86598 1.76838 1.57371 1.15639 1.22531 0.96450 0.97774 1.03469 1.21086 0.81700 0.95380 1.01728 1.45935 1.06088 1.10087 1.76364 1.21638 0.91488 0.82318 0.73055 1.90586 1.70885 1.31858 1.51298 1.18124 0.86197 0.91347 1.01475 0.89450 1.20730 1.10638 1.31062 0.92634 0.91904 1.24975 0.96146 0.95878 0.96177 1.69931 1.18206 1.39206 1.24003 0.86446 0.79113 0.79317 0.82695 1.19514 1.20739 1.20787 1.20016 0.93876 0.95246 0.91792 1.20821 0.98286 0.92628 0.98616 1.20950 1.00678 0.96300 0.97354 1.20788 1.02821 0.98739 0.94411 1.20894 1.01635 0.94332 0.98176 1.20979 0.99851 0.95113 0.97708 0.92765 0.92087 0.93016 0.91618 0.91012 0.77946 0.90854 0.90448 0.92587 0.91659 0.76205 0.92435 0.87172 0.87617 0.87741 0.87591 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.16 -1.26 5.61 -26.73 -0.15 -1.41 16 3 C 0.11 1.09 2.97 -26.73 -0.08 1.01 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 5 O -0.56 -6.18 12.41 -35.23 -0.44 -6.62 16 6 C -0.16 -1.81 5.01 -26.73 -0.13 -1.95 16 7 C 0.13 1.94 5.57 -4.05 -0.02 1.92 16 8 N -0.73 -13.49 5.45 -60.29 -0.33 -13.81 16 9 C 0.53 11.88 7.04 -10.98 -0.08 11.80 16 10 O -0.57 -14.20 15.41 5.55 0.09 -14.12 16 11 C 0.05 1.19 2.37 -94.08 -0.22 0.97 16 12 H 0.09 2.20 7.13 -51.93 -0.37 1.83 16 13 C -0.51 -12.83 7.47 -34.44 -0.26 -13.09 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 16 N -0.88 -23.10 12.84 55.43 0.71 -22.39 16 17 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.01 -0.20 4.30 -104.62 -0.45 -0.65 16 22 C -0.09 -1.97 8.30 -39.58 -0.33 -2.30 16 23 C -0.13 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.13 -2.62 10.05 -39.59 -0.40 -3.02 16 26 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.37 2.96 9.05 45.56 0.41 3.38 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 37 H 0.40 6.96 8.36 -40.82 -0.34 6.62 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.11 2.58 7.90 -52.49 -0.41 2.16 16 40 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.11 2.39 7.96 -52.49 -0.42 1.98 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -30.13 362.17 -8.70 -38.84 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.14 Total: 13.14 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.03 Total: -15.21 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.38 Total: -36.20 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.35 Total: -20.73 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.13 -8.70 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137314765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.858 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds