Wall clock time and date at job start Tue Mar 31 2020 07:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.08993 * 109.47454 * 305.00296 * 3 2 1 5 5 O 1.42902 * 109.46895 * 65.00178 * 3 2 1 6 6 C 1.52996 * 109.47049 * 184.99643 * 3 2 1 7 7 C 1.52997 * 109.47230 * 175.00144 * 6 3 2 8 8 N 1.46497 * 109.47509 * 180.02562 * 7 6 3 9 9 C 1.34775 * 120.00313 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00018 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00169 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.46540 * 60.00161 * 11 9 8 13 13 C 1.50696 * 109.47115 * 300.00083 * 11 9 8 14 14 H 1.08001 * 120.00305 * 324.88344 * 13 11 9 15 15 C 1.37875 * 119.99875 * 144.87788 * 13 11 9 16 16 N 1.31508 * 120.00153 * 5.19948 * 15 13 11 17 17 Si 1.86797 * 120.00097 * 185.19630 * 15 13 11 18 18 H 1.48508 * 109.47024 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47358 * 120.00164 * 17 15 13 20 20 H 1.48499 * 109.47481 * 240.00552 * 17 15 13 21 21 C 1.50697 * 109.46981 * 179.97438 * 11 9 8 22 22 C 1.38242 * 120.00019 * 66.01546 * 21 11 9 23 23 C 1.38235 * 120.00028 * 179.81113 * 22 21 11 24 24 C 1.38242 * 119.99768 * 0.38953 * 23 22 21 25 25 C 1.38226 * 119.99866 * 359.86424 * 24 23 22 26 26 C 1.38232 * 120.00172 * 246.28572 * 21 11 9 27 27 H 1.09004 * 109.47072 * 59.99673 * 1 2 3 28 28 H 1.08997 * 109.46823 * 299.99643 * 1 2 3 29 29 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47058 * 120.00333 * 2 1 3 31 31 H 1.08997 * 109.46823 * 240.00357 * 2 1 3 32 32 H 0.96705 * 114.00113 * 59.99390 * 5 3 2 33 33 H 1.09001 * 109.47703 * 295.00551 * 6 3 2 34 34 H 1.09007 * 109.46969 * 55.00589 * 6 3 2 35 35 H 1.09001 * 109.47109 * 300.00770 * 7 6 3 36 36 H 1.09004 * 109.47055 * 59.99890 * 7 6 3 37 37 H 0.96994 * 119.99548 * 0.02562 * 8 7 6 38 38 H 0.97005 * 120.00383 * 180.02562 * 16 15 13 39 39 H 1.07998 * 119.99952 * 359.97438 * 22 21 11 40 40 H 1.07993 * 119.99897 * 180.23387 * 23 22 21 41 41 H 1.07995 * 119.99496 * 179.83930 * 24 23 22 42 42 H 1.08006 * 119.99631 * 179.97438 * 25 24 23 43 43 H 1.07995 * 119.99797 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 3.5649 1.4443 -0.1256 7 6 4.0646 2.8849 -0.2510 8 7 5.5246 2.8866 -0.3719 9 6 6.1893 4.0527 -0.4944 10 8 5.5787 5.1006 -0.5040 11 6 7.6912 4.0545 -0.6182 12 1 7.9833 3.4905 -1.5040 13 6 8.2969 3.4170 0.6056 14 1 7.8332 3.5538 1.5714 15 6 9.4429 2.6589 0.4924 16 7 10.0648 2.5757 -0.6634 17 14 10.1124 1.7500 1.9807 18 1 9.2353 2.0043 3.1518 19 1 10.1477 0.2929 1.6963 20 1 11.4861 2.2298 2.2771 21 6 8.1833 5.4735 -0.7418 22 6 8.0404 6.3494 0.3181 23 6 8.4953 7.6499 0.2061 24 6 9.0859 8.0768 -0.9687 25 6 9.2240 7.2024 -2.0302 26 6 8.7726 5.9008 -1.9169 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0142 1.6541 2.0140 33 1 4.0030 0.9835 0.7597 34 1 3.8571 0.8800 -1.0113 35 1 3.6264 3.3457 -1.1363 36 1 3.7723 3.4492 0.6346 37 1 6.0128 2.0486 -0.3638 38 1 10.8709 2.0420 -0.7432 39 1 7.5757 6.0169 1.2345 40 1 8.3871 8.3331 1.0354 41 1 9.4390 9.0936 -1.0570 42 1 9.6851 7.5361 -2.9482 43 1 8.8806 5.2176 -2.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137314765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:14 Heat of formation + Delta-G solvation = -111.133157 kcal Electronic energy + Delta-G solvation = -22987.649063 eV Core-core repulsion = 19609.674007 eV Total energy + Delta-G solvation = -3377.975056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86270 -39.50950 -38.93105 -35.79861 -35.50849 -33.72311 -32.91126 -31.62234 -31.53914 -29.12604 -26.75458 -25.53160 -23.25233 -23.07459 -22.41885 -22.14216 -20.89952 -18.68434 -17.82726 -17.58422 -17.26080 -16.85568 -16.81423 -16.28665 -15.99132 -15.64012 -15.50248 -15.10887 -14.71825 -14.45101 -14.10414 -13.96049 -13.84853 -13.46111 -13.42169 -13.28431 -12.88265 -12.83844 -12.76170 -12.48238 -12.20306 -12.17139 -11.93839 -11.80875 -11.69172 -11.63108 -11.26491 -10.90343 -10.69321 -10.38790 -9.87925 -9.56219 -9.25806 -8.21120 -6.33245 0.75318 0.80349 1.41430 1.45373 1.55590 1.95323 2.42934 2.53304 3.07849 3.26566 3.51069 3.78006 3.97315 4.11199 4.21838 4.28432 4.29746 4.30929 4.41130 4.50830 4.54252 4.62269 4.67502 4.78194 4.87291 4.95285 4.97096 5.05672 5.10272 5.13266 5.15012 5.36454 5.37183 5.42947 5.44576 5.64800 5.69982 5.78010 5.82911 5.95030 6.23518 6.40572 6.71039 6.80871 6.88098 7.34104 7.55811 8.87210 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.004295 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.644392 B = 6517.161457 C = 7918.878363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.113 3.887 4 H 0.092 0.908 5 O -0.578 6.578 6 C -0.151 4.151 7 C 0.126 3.874 8 N -0.719 5.719 9 C 0.522 3.478 10 O -0.597 6.597 11 C 0.052 3.948 12 H 0.067 0.933 13 C -0.516 4.516 14 H 0.052 0.948 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.287 1.287 21 C -0.038 4.038 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.143 4.143 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.386 0.614 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.410 0.590 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 -4.607 0.328 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.053 3.947 4 H 0.110 0.890 5 O -0.385 6.385 6 C -0.189 4.189 7 C 0.002 3.998 8 N -0.370 5.370 9 C 0.311 3.689 10 O -0.478 6.478 11 C 0.031 3.969 12 H 0.085 0.915 13 C -0.554 4.554 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.542 5.542 17 Si 0.782 3.218 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.213 1.213 21 C -0.039 4.039 22 C -0.131 4.131 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.012 -3.585 -0.184 11.583 hybrid contribution 1.114 -1.248 0.974 1.936 sum -9.898 -4.832 0.790 11.043 Atomic orbital electron populations 1.21704 0.95147 1.01869 1.01907 1.22182 0.96991 0.95760 1.03773 1.21887 0.91536 0.93813 0.87449 0.88996 1.86569 1.77143 1.58270 1.16556 1.22474 0.97320 0.94533 1.04611 1.21218 0.79604 0.98422 1.00516 1.45870 1.07481 1.09107 1.74565 1.21481 0.91225 0.83002 0.73194 1.90551 1.71221 1.33075 1.53002 1.18021 0.87126 0.91623 1.00155 0.91522 1.20758 1.10857 1.31297 0.92438 0.93003 1.25610 0.96224 0.96477 0.98467 1.70028 1.18602 1.39968 1.25611 0.85523 0.77893 0.78655 0.79707 1.19323 1.19495 1.21320 1.20144 0.95256 0.95463 0.93016 1.20853 0.99970 0.94260 0.98013 1.21330 0.99583 0.95444 0.98996 1.21275 1.01198 1.00487 0.93216 1.21312 1.00402 0.93156 0.99862 1.21144 1.00958 0.96714 0.97303 0.93021 0.92886 0.91849 0.90626 0.90074 0.76481 0.89832 0.89064 0.93372 0.93342 0.75449 0.92335 0.88839 0.84659 0.83461 0.84162 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.81 71.98 0.71 -1.42 16 2 C -0.15 -2.10 5.61 30.60 0.17 -1.93 16 3 C 0.11 2.11 2.97 30.59 0.09 2.20 16 4 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 5 O -0.58 -12.34 12.41 -148.98 -1.85 -14.19 16 6 C -0.15 -3.17 5.01 30.59 0.15 -3.02 16 7 C 0.13 3.94 5.57 86.38 0.48 4.42 16 8 N -0.72 -27.06 5.45 -463.06 -2.53 -29.58 16 9 C 0.52 24.50 7.04 87.66 0.62 25.12 16 10 O -0.60 -31.04 15.41 -3.05 -0.05 -31.08 16 11 C 0.05 2.59 2.37 -13.03 -0.03 2.56 16 12 H 0.07 3.54 7.13 -2.39 -0.02 3.52 16 13 C -0.52 -26.48 7.47 25.60 0.19 -26.29 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 15 C 0.03 1.74 5.45 84.66 0.46 2.20 16 16 N -0.91 -48.37 12.84 21.45 0.28 -48.10 16 17 Si 0.96 40.53 29.54 68.60 2.03 42.55 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.04 -1.87 4.30 -19.87 -0.09 -1.95 16 22 C -0.11 -5.31 8.30 22.27 0.18 -5.12 16 23 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.13 -4.90 10.05 22.27 0.22 -4.67 16 26 C -0.14 -6.48 9.67 22.27 0.22 -6.26 16 27 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.39 5.72 9.05 -74.05 -0.67 5.05 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.69 7.82 -2.38 -0.02 1.68 16 37 H 0.41 14.29 8.36 -92.71 -0.77 13.51 16 38 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 39 H 0.09 4.57 7.90 -2.91 -0.02 4.55 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.11 4.78 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -66.16 362.17 1.26 -64.89 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -0.44 Total: 39.63 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.83 Total: -24.13 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.25 Total: -77.68 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -1.90 Total: -45.27 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -66.16 1.26 -64.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137314765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.241 kcal (2) G-P(sol) polarization free energy of solvation -66.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds