Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.53005 * 109.46903 * 240.00070 * 2 1 3 5 5 O 1.42895 * 109.47173 * 60.00109 * 4 2 1 6 6 C 1.52992 * 109.47013 * 120.00267 * 2 1 3 7 7 N 1.46503 * 109.47289 * 299.99856 * 6 2 1 8 8 C 1.34769 * 120.00380 * 180.02562 * 7 6 2 9 9 O 1.21283 * 120.00035 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00455 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47069 * 300.00306 * 10 8 7 12 12 C 1.50702 * 109.47018 * 59.99464 * 10 8 7 13 13 H 1.07997 * 120.00304 * 235.33770 * 12 10 8 14 14 C 1.37879 * 119.99933 * 55.33892 * 12 10 8 15 15 N 1.31516 * 119.99735 * 1.96772 * 14 12 10 16 16 Si 1.86800 * 120.00111 * 181.96427 * 14 12 10 17 17 H 1.48498 * 109.46846 * 90.00198 * 16 14 12 18 18 H 1.48499 * 109.46961 * 209.99878 * 16 14 12 19 19 H 1.48494 * 109.47187 * 329.99881 * 16 14 12 20 20 C 1.50700 * 109.47580 * 179.97438 * 10 8 7 21 21 C 1.38238 * 119.99685 * 47.22350 * 20 10 8 22 22 C 1.38240 * 119.99512 * 180.02562 * 21 20 10 23 23 C 1.38236 * 120.00137 * 359.95537 * 22 21 20 24 24 C 1.38228 * 120.00048 * 359.97438 * 23 22 21 25 25 C 1.38232 * 120.00167 * 227.20237 * 20 10 8 26 26 H 1.08994 * 109.46769 * 299.99860 * 1 2 3 27 27 H 1.08998 * 109.46672 * 59.99840 * 1 2 3 28 28 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47064 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47260 * 300.00330 * 3 2 1 31 31 H 1.08999 * 109.47014 * 59.99644 * 3 2 1 32 32 H 1.09000 * 109.46878 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46902 * 299.99746 * 4 2 1 34 34 H 0.96700 * 114.00393 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.47090 * 180.02562 * 6 2 1 36 36 H 1.09001 * 109.47655 * 59.99725 * 6 2 1 37 37 H 0.96999 * 119.99668 * 359.97438 * 7 6 2 38 38 H 0.97003 * 120.00319 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.00284 * 359.97438 * 21 20 10 40 40 H 1.08001 * 119.99592 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99403 * 179.72391 * 23 22 21 42 42 H 1.07996 * 120.00078 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00068 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2492 7 7 1.5517 -0.0307 2.4454 8 6 1.8777 -0.4909 3.6694 9 8 2.5749 -1.4770 3.7807 10 6 1.3749 0.2191 4.8999 11 1 1.7375 1.2471 4.8999 12 6 -0.1321 0.2181 4.9000 13 1 -0.6728 1.1499 4.9761 14 6 -0.8207 -0.9725 4.8029 15 7 -0.1628 -2.1100 4.7493 16 14 -2.6879 -0.9698 4.7476 17 1 -3.1411 -0.8792 3.3364 18 1 -3.2028 -2.2240 5.3533 19 1 -3.2039 0.1959 5.5091 20 6 1.8773 -0.4912 6.1304 21 6 3.2086 -0.8512 6.2255 22 6 3.6693 -1.5033 7.3540 23 6 2.7989 -1.7946 8.3877 24 6 1.4680 -1.4333 8.2932 25 6 1.0070 -0.7824 7.1641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 1.8493 -0.4509 -3.2472 35 1 3.1301 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9944 0.7582 2.3564 38 1 -0.6472 -2.9477 4.6813 39 1 3.8885 -0.6238 5.4178 40 1 4.7093 -1.7850 7.4281 41 1 3.1580 -2.3080 9.2674 42 1 0.7880 -1.6611 9.1006 43 1 -0.0329 -0.5005 7.0902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137638316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -73.981913 kcal Electronic energy + Delta-G solvation = -24164.964312 eV Core-core repulsion = 20788.600255 eV Total energy + Delta-G solvation = -3376.364057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.17423 -38.26726 -37.13370 -35.26682 -33.57279 -32.01452 -30.77946 -29.63797 -27.53337 -27.03768 -26.54542 -25.04733 -23.59637 -21.23613 -20.50880 -19.17787 -18.75044 -17.50079 -16.75616 -15.82409 -15.29063 -15.11765 -14.94649 -14.85863 -14.13626 -13.93143 -13.72698 -13.54163 -13.25794 -12.90286 -12.60153 -12.32170 -12.20778 -12.07570 -11.94509 -11.74348 -11.37055 -11.23911 -10.97062 -10.78751 -10.70859 -10.57982 -10.40823 -10.36414 -10.01544 -9.97578 -9.63735 -9.34227 -8.69190 -8.26663 -7.91735 -7.65451 -7.36137 -6.11164 -4.27440 2.58252 2.64883 3.20631 3.30449 3.30798 3.98251 4.21317 4.36038 4.65468 4.90618 4.96537 5.07650 5.13680 5.17014 5.48181 5.58992 5.60728 5.88503 5.93657 5.98552 6.01449 6.08656 6.10402 6.21400 6.25871 6.32912 6.42896 6.51817 6.57980 6.65193 6.71327 6.84976 6.94835 7.17002 7.25120 7.53446 7.57922 7.62464 7.68391 7.71237 7.83236 8.20080 8.31042 8.65139 8.85372 9.39010 9.75226 10.89095 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.005516 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.355522 B = 5075.073793 C = 6271.081541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 C -0.135 4.135 4 C 0.089 3.911 5 O -0.569 6.569 6 C 0.139 3.861 7 N -0.731 5.731 8 C 0.550 3.450 9 O -0.549 6.549 10 C 0.056 3.944 11 H 0.056 0.944 12 C -0.540 4.540 13 H 0.066 0.934 14 C 0.075 3.925 15 N -0.841 5.841 16 Si 0.884 3.116 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.013 4.013 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.065 4.065 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.375 0.625 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.395 0.605 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 4.064 -7.484 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 C -0.192 4.192 4 C 0.011 3.989 5 O -0.373 6.373 6 C 0.014 3.986 7 N -0.385 5.385 8 C 0.339 3.661 9 O -0.426 6.426 10 C 0.035 3.965 11 H 0.074 0.926 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.133 4.133 15 N -0.473 5.473 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.014 4.014 21 C -0.118 4.118 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.167 4.167 25 C -0.083 4.083 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.221 0.779 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.740 3.493 -6.946 8.627 hybrid contribution -1.147 -0.587 -0.593 1.418 sum 2.593 2.906 -7.539 8.486 Atomic orbital electron populations 1.21764 0.93453 1.02081 1.02018 1.20781 0.97177 0.96443 0.93051 1.21765 1.00491 0.94954 1.01996 1.22113 0.97017 0.94701 0.85105 1.86465 1.77597 1.57386 1.15899 1.20952 0.97819 0.95990 0.83813 1.45775 1.55457 1.32533 1.04783 1.20986 0.76908 0.83922 0.84251 1.90531 1.39125 1.26317 1.86635 1.17882 0.97134 0.93843 0.87673 0.92634 1.20688 0.88579 0.93400 1.55119 0.91566 1.25043 0.98170 0.95698 0.94382 1.70079 1.35067 0.97387 1.44784 0.86703 0.85983 0.77736 0.78420 1.20504 1.21184 1.19623 1.19814 0.91424 0.95459 0.94698 1.20972 0.96177 0.98706 0.95975 1.20817 0.98399 1.02049 0.95035 1.20763 0.94290 1.02742 0.98553 1.20985 0.95188 1.01848 0.98632 1.21146 1.00085 0.95439 0.91616 0.91895 0.92251 0.92928 0.93022 0.92070 0.92289 0.93622 0.93520 0.77915 0.92863 0.92425 0.76975 0.92573 0.87537 0.88158 0.88260 0.88088 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.16 37.16 0.30 -1.70 16 2 C -0.07 -1.03 0.61 -154.51 -0.09 -1.12 16 3 C -0.13 -1.73 8.16 37.16 0.30 -1.43 16 4 C 0.09 1.05 5.91 37.16 0.22 1.26 16 5 O -0.57 -6.24 12.31 -35.23 -0.43 -6.67 16 6 C 0.14 2.40 4.56 -4.04 -0.02 2.38 16 7 N -0.73 -14.31 4.86 -60.30 -0.29 -14.61 16 8 C 0.55 12.93 5.45 -10.99 -0.06 12.88 16 9 O -0.55 -14.61 13.95 5.55 0.08 -14.54 16 10 C 0.06 1.31 2.78 -94.08 -0.26 1.05 16 11 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.54 -13.11 7.12 -34.44 -0.25 -13.35 16 13 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.08 1.89 3.99 -17.82 -0.07 1.82 16 15 N -0.84 -22.90 10.88 55.43 0.60 -22.30 16 16 Si 0.88 19.84 29.54 -169.99 -5.02 14.81 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 C -0.01 -0.31 4.52 -104.62 -0.47 -0.78 16 21 C -0.10 -2.29 8.21 -39.58 -0.33 -2.62 16 22 C -0.14 -3.01 10.05 -39.58 -0.40 -3.40 16 23 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 24 C -0.15 -3.14 10.05 -39.59 -0.40 -3.54 16 25 C -0.06 -1.53 8.20 -39.58 -0.32 -1.85 16 26 H 0.06 0.99 6.86 -51.93 -0.36 0.63 16 27 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.06 0.76 6.86 -51.93 -0.36 0.41 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.37 2.37 9.12 45.56 0.42 2.78 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.40 7.17 6.05 -40.82 -0.25 6.92 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.11 2.41 7.01 -52.49 -0.37 2.05 16 40 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 43 H 0.13 3.09 6.02 -52.49 -0.32 2.77 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -30.39 345.25 -7.90 -38.29 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -5.80 Total: 13.52 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.24 Total: -13.72 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.31 Total: -36.90 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.36 Total: -21.21 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.39 -7.90 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137638316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.691 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds