Wall clock time and date at job start Tue Mar 31 2020 06:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 C 1.53005 * 109.46903 * 240.00070 * 2 1 3 5 5 O 1.42895 * 109.47173 * 60.00109 * 4 2 1 6 6 C 1.52992 * 109.47013 * 120.00267 * 2 1 3 7 7 N 1.46503 * 109.47289 * 299.99856 * 6 2 1 8 8 C 1.34769 * 120.00380 * 180.02562 * 7 6 2 9 9 O 1.21283 * 120.00035 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00455 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47069 * 300.00306 * 10 8 7 12 12 C 1.50702 * 109.47018 * 59.99464 * 10 8 7 13 13 H 1.07997 * 120.00304 * 235.33770 * 12 10 8 14 14 C 1.37879 * 119.99933 * 55.33892 * 12 10 8 15 15 N 1.31516 * 119.99735 * 1.96772 * 14 12 10 16 16 Si 1.86800 * 120.00111 * 181.96427 * 14 12 10 17 17 H 1.48498 * 109.46846 * 90.00198 * 16 14 12 18 18 H 1.48499 * 109.46961 * 209.99878 * 16 14 12 19 19 H 1.48494 * 109.47187 * 329.99881 * 16 14 12 20 20 C 1.50700 * 109.47580 * 179.97438 * 10 8 7 21 21 C 1.38238 * 119.99685 * 47.22350 * 20 10 8 22 22 C 1.38240 * 119.99512 * 180.02562 * 21 20 10 23 23 C 1.38236 * 120.00137 * 359.95537 * 22 21 20 24 24 C 1.38228 * 120.00048 * 359.97438 * 23 22 21 25 25 C 1.38232 * 120.00167 * 227.20237 * 20 10 8 26 26 H 1.08994 * 109.46769 * 299.99860 * 1 2 3 27 27 H 1.08998 * 109.46672 * 59.99840 * 1 2 3 28 28 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47064 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47260 * 300.00330 * 3 2 1 31 31 H 1.08999 * 109.47014 * 59.99644 * 3 2 1 32 32 H 1.09000 * 109.46878 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46902 * 299.99746 * 4 2 1 34 34 H 0.96700 * 114.00393 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.47090 * 180.02562 * 6 2 1 36 36 H 1.09001 * 109.47655 * 59.99725 * 6 2 1 37 37 H 0.96999 * 119.99668 * 359.97438 * 7 6 2 38 38 H 0.97003 * 120.00319 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.00284 * 359.97438 * 21 20 10 40 40 H 1.08001 * 119.99592 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99403 * 179.72391 * 23 22 21 42 42 H 1.07996 * 120.00078 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.00068 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2492 7 7 1.5517 -0.0307 2.4454 8 6 1.8777 -0.4909 3.6694 9 8 2.5749 -1.4770 3.7807 10 6 1.3749 0.2191 4.8999 11 1 1.7375 1.2471 4.8999 12 6 -0.1321 0.2181 4.9000 13 1 -0.6728 1.1499 4.9761 14 6 -0.8207 -0.9725 4.8029 15 7 -0.1628 -2.1100 4.7493 16 14 -2.6879 -0.9698 4.7476 17 1 -3.1411 -0.8792 3.3364 18 1 -3.2028 -2.2240 5.3533 19 1 -3.2039 0.1959 5.5091 20 6 1.8773 -0.4912 6.1304 21 6 3.2086 -0.8512 6.2255 22 6 3.6693 -1.5033 7.3540 23 6 2.7989 -1.7946 8.3877 24 6 1.4680 -1.4333 8.2932 25 6 1.0070 -0.7824 7.1641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7209 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 1.8493 -0.4509 -3.2472 35 1 3.1301 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9944 0.7582 2.3564 38 1 -0.6472 -2.9477 4.6813 39 1 3.8885 -0.6238 5.4178 40 1 4.7093 -1.7850 7.4281 41 1 3.1580 -2.3080 9.2674 42 1 0.7880 -1.6611 9.1006 43 1 -0.0329 -0.5005 7.0902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137638316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:58 Heat of formation + Delta-G solvation = -93.703686 kcal Electronic energy + Delta-G solvation = -24165.819512 eV Core-core repulsion = 20788.600255 eV Total energy + Delta-G solvation = -3377.219257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82553 -39.64377 -38.63831 -36.43055 -35.45880 -33.54060 -32.60233 -31.33397 -29.24268 -28.16260 -27.73198 -26.51525 -25.32087 -22.94168 -22.18312 -20.93411 -19.97436 -18.69821 -18.32400 -17.40631 -17.03984 -16.73067 -16.46482 -16.22991 -15.68199 -15.40052 -15.19976 -15.05573 -14.69744 -14.35967 -14.08594 -13.92433 -13.74523 -13.63560 -13.43289 -13.02860 -12.97220 -12.76572 -12.66959 -12.51413 -12.25637 -11.91046 -11.78514 -11.75591 -11.47157 -11.39869 -11.15199 -10.85026 -10.63525 -10.14212 -9.60552 -9.36161 -9.08149 -8.05834 -6.25323 0.89521 0.94949 1.40525 1.45466 1.52104 2.34138 2.46457 2.73844 3.21583 3.33840 3.49255 3.80242 3.82343 4.09869 4.35395 4.37212 4.42682 4.50822 4.52491 4.57120 4.62721 4.71941 4.79934 4.87005 4.89658 5.02121 5.04172 5.05709 5.11240 5.16995 5.20923 5.39323 5.43725 5.47504 5.56323 5.71724 5.90096 5.93650 5.99308 6.01962 6.44687 6.54779 6.77551 6.94824 7.11443 7.43377 7.96192 8.92913 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.005516 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.355522 B = 5075.073793 C = 6271.081541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 C -0.129 4.129 4 C 0.094 3.906 5 O -0.579 6.579 6 C 0.143 3.857 7 N -0.721 5.721 8 C 0.548 3.452 9 O -0.585 6.585 10 C 0.046 3.954 11 H 0.067 0.933 12 C -0.533 4.533 13 H 0.071 0.929 14 C 0.041 3.959 15 N -0.872 5.872 16 Si 0.937 3.063 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.262 1.262 20 C -0.034 4.034 21 C -0.118 4.118 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.087 4.087 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.397 0.603 35 H 0.056 0.944 36 H 0.032 0.968 37 H 0.403 0.597 38 H 0.255 0.745 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 4.580 -7.691 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.069 4.069 3 C -0.187 4.187 4 C 0.016 3.984 5 O -0.387 6.387 6 C 0.018 3.982 7 N -0.374 5.374 8 C 0.338 3.662 9 O -0.465 6.465 10 C 0.025 3.975 11 H 0.085 0.915 12 C -0.571 4.571 13 H 0.089 0.911 14 C -0.163 4.163 15 N -0.506 5.506 16 Si 0.763 3.237 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.186 1.186 20 C -0.035 4.035 21 C -0.136 4.136 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.171 4.171 25 C -0.106 4.106 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.239 0.761 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.987 4.052 -7.193 9.168 hybrid contribution -1.189 -0.714 -0.529 1.484 sum 2.798 3.339 -7.722 8.866 Atomic orbital electron populations 1.21715 0.94121 1.01170 1.01872 1.20707 0.96498 0.97112 0.92561 1.21717 1.00933 0.93889 1.02132 1.21953 0.97702 0.94193 0.84563 1.86398 1.77869 1.57723 1.16678 1.20997 0.97885 0.94898 0.84384 1.45677 1.54679 1.32448 1.04633 1.20992 0.76550 0.83429 0.85271 1.90497 1.40890 1.27845 1.87282 1.18006 0.96856 0.94595 0.88077 0.91491 1.20880 0.89194 0.93346 1.53685 0.91103 1.25546 1.01229 0.95337 0.94196 1.70242 1.36017 0.97555 1.46830 0.85874 0.82132 0.77408 0.78267 1.20381 1.22165 1.18580 1.19927 0.92188 0.96463 0.94968 1.21042 0.95816 0.99882 0.96883 1.21194 1.00119 1.00842 0.94301 1.21172 0.93559 1.01777 0.99468 1.21312 0.96431 1.00866 0.98447 1.21131 0.99389 0.97133 0.92901 0.93247 0.91064 0.94212 0.92279 0.91255 0.92777 0.92208 0.93575 0.75373 0.92578 0.94980 0.76134 0.93616 0.88254 0.85265 0.84449 0.85627 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.16 71.98 0.59 -3.21 16 2 C -0.07 -1.83 0.61 -52.18 -0.03 -1.86 16 3 C -0.13 -3.11 8.16 71.98 0.59 -2.52 16 4 C 0.09 2.05 5.91 71.98 0.43 2.48 16 5 O -0.58 -11.24 12.31 -148.98 -1.83 -13.07 16 6 C 0.14 4.95 4.56 86.38 0.39 5.34 16 7 N -0.72 -28.57 4.86 -463.07 -2.25 -30.82 16 8 C 0.55 26.29 5.45 87.66 0.48 26.77 16 9 O -0.59 -31.96 13.95 -3.04 -0.04 -32.00 16 10 C 0.05 2.19 2.78 -13.03 -0.04 2.15 16 11 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 12 C -0.53 -26.04 7.12 25.60 0.18 -25.86 16 13 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 14 C 0.04 2.10 3.99 84.65 0.34 2.44 16 15 N -0.87 -48.53 10.88 21.45 0.23 -48.30 16 16 Si 0.94 40.97 29.54 68.60 2.03 42.99 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 C -0.03 -1.68 4.52 -19.87 -0.09 -1.77 16 21 C -0.12 -5.42 8.21 22.27 0.18 -5.23 16 22 C -0.15 -5.85 10.05 22.27 0.22 -5.63 16 23 C -0.14 -5.34 10.05 22.27 0.22 -5.11 16 24 C -0.15 -6.25 10.05 22.27 0.22 -6.02 16 25 C -0.09 -4.14 8.20 22.27 0.18 -3.95 16 26 H 0.05 1.53 6.86 -2.39 -0.02 1.51 16 27 H 0.07 1.88 7.68 -2.39 -0.02 1.86 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.58 7.68 -2.38 -0.02 1.56 16 31 H 0.05 1.34 6.86 -2.39 -0.02 1.32 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.40 3.91 9.12 -74.06 -0.68 3.24 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.40 14.65 6.05 -92.71 -0.56 14.08 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.10 4.60 7.01 -2.91 -0.02 4.57 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.11 5.51 6.02 -2.91 -0.02 5.49 16 Total: -1.00 -65.35 345.25 1.78 -63.57 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.22 Total: 39.62 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.87 Total: -22.00 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.02 Total: -79.11 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.88 Total: -45.07 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -65.35 1.78 -63.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137638316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.131 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds