Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 C 1.52999 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47343 * 179.97438 * 4 3 2 6 6 C 1.37095 * 119.99764 * 263.24492 * 5 4 3 7 7 H 1.08004 * 119.99964 * 188.09083 * 6 5 4 8 8 C 1.38947 * 120.00150 * 8.09312 * 6 5 4 9 9 N 1.31414 * 119.99867 * 26.09527 * 8 6 5 10 10 Si 1.86803 * 120.00219 * 206.09390 * 8 6 5 11 11 H 1.48503 * 109.46836 * 84.98476 * 10 8 6 12 12 H 1.48495 * 109.47511 * 204.98550 * 10 8 6 13 13 H 1.48497 * 109.47270 * 324.98732 * 10 8 6 14 14 C 1.34779 * 120.00254 * 83.24850 * 5 4 3 15 15 O 1.21289 * 119.99714 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99856 * 180.02562 * 14 5 4 17 17 C 1.50702 * 109.46894 * 179.97438 * 16 14 5 18 18 C 1.38286 * 119.97338 * 270.01879 * 17 16 14 19 19 C 1.38240 * 120.11562 * 180.02562 * 18 17 16 20 20 C 1.38170 * 120.05395 * 359.68805 * 19 18 17 21 21 C 1.38708 * 119.94070 * 0.56847 * 20 19 18 22 22 O 1.35900 * 120.05837 * 179.72610 * 21 20 19 23 23 C 1.42906 * 116.99657 * 359.72360 * 22 21 20 24 24 C 1.38121 * 119.97430 * 90.00303 * 17 16 14 25 25 H 1.08998 * 109.47227 * 300.00264 * 1 2 3 26 26 H 1.09001 * 109.47221 * 60.00410 * 1 2 3 27 27 H 1.08998 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47227 * 239.99736 * 2 1 3 29 29 H 1.09001 * 109.47221 * 119.99590 * 2 1 3 30 30 H 1.08998 * 109.47454 * 59.99874 * 3 2 1 31 31 H 1.09001 * 109.46906 * 299.99783 * 3 2 1 32 32 H 1.08998 * 109.47241 * 59.99483 * 4 3 2 33 33 H 1.09001 * 109.46809 * 299.99581 * 4 3 2 34 34 H 0.97004 * 119.99553 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47644 * 59.99688 * 16 14 5 36 36 H 1.09001 * 109.47135 * 299.99660 * 16 14 5 37 37 H 1.08002 * 119.94079 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97531 * 179.97438 * 19 18 17 39 39 H 1.07994 * 120.03127 * 180.29682 * 20 19 18 40 40 H 1.09003 * 109.46809 * 179.97438 * 23 22 21 41 41 H 1.08993 * 109.47223 * 299.99954 * 23 22 21 42 42 H 1.09003 * 109.46747 * 60.00306 * 23 22 21 43 43 H 1.08009 * 120.02542 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.4179 3.4231 -1.1807 7 1 4.8989 4.3901 -1.1703 8 6 4.1634 2.7867 -2.3893 9 7 3.1778 1.9224 -2.4820 10 14 5.2223 3.1595 -3.8824 11 1 6.4381 2.3073 -3.8522 12 1 4.4507 2.8775 -5.1194 13 1 5.6200 4.5901 -3.8624 14 6 4.1540 3.5053 1.1576 15 8 3.8354 2.9752 2.2009 16 6 4.6557 4.9263 1.1568 17 6 4.6658 5.4562 2.5675 18 6 3.5485 6.0948 3.0736 19 6 3.5547 6.5825 4.3671 20 6 4.6757 6.4272 5.1598 21 6 5.7996 5.7918 4.6528 22 8 6.9054 5.6426 5.4285 23 6 6.8430 6.1700 6.7553 24 6 5.7908 5.3034 3.3541 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9336 0.9287 0.8892 34 1 3.0005 1.4778 -3.3257 35 1 3.9999 5.5429 0.5421 36 1 5.6668 4.9544 0.7505 37 1 2.6695 6.2127 2.4573 38 1 2.6811 7.0812 4.7600 39 1 4.6784 6.8041 6.1719 40 1 7.7884 5.9839 7.2650 41 1 6.6586 7.2433 6.7113 42 1 6.0343 5.6844 7.3015 43 1 6.6633 4.8047 2.9583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142843370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = -51.615620 kcal Electronic energy + Delta-G solvation = -23313.072693 eV Core-core repulsion = 19937.678511 eV Total energy + Delta-G solvation = -3375.394182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91812 -38.64639 -37.15895 -35.24065 -33.64059 -32.04612 -31.45812 -30.21601 -28.60270 -27.30364 -26.49607 -24.77383 -22.77136 -22.19829 -20.90798 -20.07715 -19.05799 -17.66300 -16.56875 -16.07880 -15.96815 -15.67896 -15.59371 -14.40495 -14.35995 -14.27821 -14.14500 -13.66213 -13.40424 -12.85666 -12.79158 -12.75832 -12.21963 -11.98886 -11.86237 -11.70735 -11.59187 -11.27534 -11.15266 -10.95115 -10.86748 -10.66312 -10.48103 -10.43951 -10.30322 -10.22004 -10.03383 -9.44344 -8.82903 -8.61837 -8.20375 -7.86452 -7.75931 -6.40852 -3.84621 1.68461 1.80839 3.10299 3.21930 3.22452 3.41444 3.92395 4.03985 4.13076 4.90127 4.96510 5.01717 5.12433 5.13514 5.19390 5.39754 5.46060 5.70967 5.71665 5.77017 5.78482 5.88732 5.95186 6.13708 6.25436 6.31632 6.42929 6.47976 6.50737 6.59310 6.66792 6.72847 6.74348 6.87875 7.02789 7.06240 7.08760 7.12032 7.35408 7.49313 7.64054 7.74355 7.81626 8.43729 9.07693 9.56186 9.98104 10.58173 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.004307 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.499439 B = 6498.782297 C = 7635.125101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.112 4.112 4 C 0.140 3.860 5 N -0.440 5.440 6 C -0.342 4.342 7 H 0.100 0.900 8 C 0.040 3.960 9 N -0.848 5.848 10 Si 0.911 3.089 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.456 3.544 15 O -0.602 6.602 16 C -0.089 4.089 17 C -0.003 4.003 18 C -0.142 4.142 19 C -0.084 4.084 20 C -0.220 4.220 21 C 0.121 3.879 22 O -0.321 6.321 23 C 0.030 3.970 24 C -0.138 4.138 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 5.986 8.331 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.151 4.151 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.469 4.469 7 H 0.118 0.882 8 C -0.165 4.165 9 N -0.485 5.485 10 Si 0.738 3.262 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.195 1.195 14 C 0.244 3.756 15 O -0.489 6.489 16 C -0.129 4.129 17 C -0.003 4.003 18 C -0.160 4.160 19 C -0.102 4.102 20 C -0.238 4.238 21 C 0.076 3.924 22 O -0.234 6.234 23 C -0.065 4.065 24 C -0.157 4.157 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.598 5.489 8.614 10.339 hybrid contribution 0.272 0.255 -0.691 0.785 sum 1.871 5.744 7.923 9.963 Atomic orbital electron populations 1.21722 0.97127 1.00071 1.01300 1.21356 0.94616 0.98598 1.00546 1.21796 0.96395 0.95008 1.01871 1.21248 0.93897 0.83044 1.00156 1.43802 1.55163 1.11387 1.05414 1.19647 1.38581 1.05642 0.83019 0.88211 1.25140 0.95617 0.96982 0.98803 1.70158 1.23953 1.27855 1.26569 0.86196 0.80324 0.79053 0.80624 1.20321 1.21101 1.19538 1.19764 0.84347 0.87415 0.84088 1.90557 1.55991 1.70461 1.31856 1.20530 1.03456 0.96277 0.92629 1.19375 0.92276 0.93404 0.95271 1.20915 0.98143 1.00925 0.96024 1.20798 0.97051 0.98553 0.93804 1.21050 0.94670 1.07311 1.00814 1.18923 0.85903 0.96445 0.91079 1.86055 1.35859 1.76479 1.25049 1.22973 1.03196 0.98398 0.81965 1.20232 0.99977 1.03762 0.91683 0.93524 0.92933 0.93980 0.92294 0.93736 0.94678 0.88841 0.88830 0.94736 0.92123 0.88824 0.89167 0.86158 0.86278 0.86173 0.88670 0.92973 0.92886 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.11 -2.16 5.93 -26.73 -0.16 -2.32 16 3 C -0.11 -2.55 5.02 -26.73 -0.13 -2.69 16 4 C 0.14 3.39 4.52 -4.05 -0.02 3.38 16 5 N -0.44 -10.96 2.64 -114.82 -0.30 -11.27 16 6 C -0.34 -8.35 9.25 -14.94 -0.14 -8.49 16 7 H 0.10 2.29 6.47 -52.48 -0.34 1.95 16 8 C 0.04 0.96 4.88 -17.47 -0.09 0.88 16 9 N -0.85 -20.72 8.72 55.50 0.48 -20.24 16 10 Si 0.91 18.78 29.63 -169.99 -5.04 13.74 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 C 0.46 11.03 7.57 -10.99 -0.08 10.95 16 15 O -0.60 -16.17 15.73 5.55 0.09 -16.08 16 16 C -0.09 -1.77 4.21 -29.04 -0.12 -1.89 16 17 C 0.00 -0.05 4.37 -104.65 -0.46 -0.51 16 18 C -0.14 -2.44 9.70 -39.56 -0.38 -2.82 16 19 C -0.08 -1.26 10.04 -39.61 -0.40 -1.65 16 20 C -0.22 -3.23 9.04 -39.43 -0.36 -3.58 16 21 C 0.12 2.00 6.69 -39.22 -0.26 1.74 16 22 O -0.32 -4.81 10.50 -19.43 -0.20 -5.01 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.14 -2.51 9.64 -39.43 -0.38 -2.89 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 2.30 6.41 -51.93 -0.33 1.97 16 32 H 0.09 2.34 5.81 -51.93 -0.30 2.04 16 33 H 0.03 0.85 7.64 -51.93 -0.40 0.46 16 34 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 35 H 0.09 1.75 7.96 -51.93 -0.41 1.34 16 36 H 0.09 1.67 7.73 -51.93 -0.40 1.26 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 42 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 43 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -28.95 352.24 -7.96 -36.91 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.67 Total: 7.28 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.62 Total: -10.63 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.18 Total: -31.51 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.12 Total: -21.09 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.04 Total: 13.74 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.95 -7.96 -36.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142843370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.710 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds