Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46786 * 2 1 4 4 C 1.52999 * 109.47184 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47343 * 179.97438 * 4 3 2 6 6 C 1.37095 * 119.99764 * 263.24492 * 5 4 3 7 7 H 1.08004 * 119.99964 * 188.09083 * 6 5 4 8 8 C 1.38947 * 120.00150 * 8.09312 * 6 5 4 9 9 N 1.31414 * 119.99867 * 26.09527 * 8 6 5 10 10 Si 1.86803 * 120.00219 * 206.09390 * 8 6 5 11 11 H 1.48503 * 109.46836 * 84.98476 * 10 8 6 12 12 H 1.48495 * 109.47511 * 204.98550 * 10 8 6 13 13 H 1.48497 * 109.47270 * 324.98732 * 10 8 6 14 14 C 1.34779 * 120.00254 * 83.24850 * 5 4 3 15 15 O 1.21289 * 119.99714 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99856 * 180.02562 * 14 5 4 17 17 C 1.50702 * 109.46894 * 179.97438 * 16 14 5 18 18 C 1.38286 * 119.97338 * 270.01879 * 17 16 14 19 19 C 1.38240 * 120.11562 * 180.02562 * 18 17 16 20 20 C 1.38170 * 120.05395 * 359.68805 * 19 18 17 21 21 C 1.38708 * 119.94070 * 0.56847 * 20 19 18 22 22 O 1.35900 * 120.05837 * 179.72610 * 21 20 19 23 23 C 1.42906 * 116.99657 * 359.72360 * 22 21 20 24 24 C 1.38121 * 119.97430 * 90.00303 * 17 16 14 25 25 H 1.08998 * 109.47227 * 300.00264 * 1 2 3 26 26 H 1.09001 * 109.47221 * 60.00410 * 1 2 3 27 27 H 1.08998 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47227 * 239.99736 * 2 1 3 29 29 H 1.09001 * 109.47221 * 119.99590 * 2 1 3 30 30 H 1.08998 * 109.47454 * 59.99874 * 3 2 1 31 31 H 1.09001 * 109.46906 * 299.99783 * 3 2 1 32 32 H 1.08998 * 109.47241 * 59.99483 * 4 3 2 33 33 H 1.09001 * 109.46809 * 299.99581 * 4 3 2 34 34 H 0.97004 * 119.99553 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47644 * 59.99688 * 16 14 5 36 36 H 1.09001 * 109.47135 * 299.99660 * 16 14 5 37 37 H 1.08002 * 119.94079 * 0.02562 * 18 17 16 38 38 H 1.07995 * 119.97531 * 179.97438 * 19 18 17 39 39 H 1.07994 * 120.03127 * 180.29682 * 20 19 18 40 40 H 1.09003 * 109.46809 * 179.97438 * 23 22 21 41 41 H 1.08993 * 109.47223 * 299.99954 * 23 22 21 42 42 H 1.09003 * 109.46747 * 60.00306 * 23 22 21 43 43 H 1.08009 * 120.02542 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.4179 3.4231 -1.1807 7 1 4.8989 4.3901 -1.1703 8 6 4.1634 2.7867 -2.3893 9 7 3.1778 1.9224 -2.4820 10 14 5.2223 3.1595 -3.8824 11 1 6.4381 2.3073 -3.8522 12 1 4.4507 2.8775 -5.1194 13 1 5.6200 4.5901 -3.8624 14 6 4.1540 3.5053 1.1576 15 8 3.8354 2.9752 2.2009 16 6 4.6557 4.9263 1.1568 17 6 4.6658 5.4562 2.5675 18 6 3.5485 6.0948 3.0736 19 6 3.5547 6.5825 4.3671 20 6 4.6757 6.4272 5.1598 21 6 5.7996 5.7918 4.6528 22 8 6.9054 5.6426 5.4285 23 6 6.8430 6.1700 6.7553 24 6 5.7908 5.3034 3.3541 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9336 0.9287 0.8892 34 1 3.0005 1.4778 -3.3257 35 1 3.9999 5.5429 0.5421 36 1 5.6668 4.9544 0.7505 37 1 2.6695 6.2127 2.4573 38 1 2.6811 7.0812 4.7600 39 1 4.6784 6.8041 6.1719 40 1 7.7884 5.9839 7.2650 41 1 6.6586 7.2433 6.7113 42 1 6.0343 5.6844 7.3015 43 1 6.6633 4.8047 2.9583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142843370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -66.042207 kcal Electronic energy + Delta-G solvation = -23313.698276 eV Core-core repulsion = 19937.678511 eV Total energy + Delta-G solvation = -3376.019766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18418 -40.37586 -38.44535 -37.07780 -35.34476 -33.53961 -33.27413 -31.42235 -30.22796 -28.44595 -27.77641 -26.62756 -24.41303 -23.45218 -22.25436 -21.77197 -20.90667 -19.04621 -18.21577 -17.86581 -17.20274 -16.92360 -16.59521 -16.19874 -16.06959 -15.94205 -15.80225 -15.02621 -14.62525 -14.51609 -14.25702 -14.10927 -13.69162 -13.56230 -13.34140 -13.22718 -12.88440 -12.81942 -12.68385 -12.39754 -12.31047 -12.14148 -12.05277 -11.93751 -11.90178 -11.70219 -11.66865 -11.28137 -10.73422 -10.35085 -9.71650 -9.66064 -9.10032 -8.26414 -5.77038 0.40782 0.54470 1.44252 1.52952 1.61027 2.06628 2.32535 2.39904 2.76546 3.12565 3.21001 3.85866 3.91909 4.17650 4.19351 4.26909 4.30645 4.41234 4.42176 4.44931 4.45668 4.51394 4.59149 4.72415 4.73410 4.78813 4.86687 4.91278 5.05283 5.07030 5.12081 5.20233 5.27341 5.35089 5.40087 5.47809 5.50623 5.61663 5.74297 5.83686 5.87290 5.91043 6.51270 6.53373 7.17831 7.65787 8.08201 8.72952 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.004307 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.499439 B = 6498.782297 C = 7635.125101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.097 4.097 4 C 0.141 3.859 5 N -0.450 5.450 6 C -0.366 4.366 7 H 0.111 0.889 8 C 0.005 3.995 9 N -0.866 5.866 10 Si 0.980 3.020 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.262 1.262 14 C 0.442 3.558 15 O -0.636 6.636 16 C -0.077 4.077 17 C -0.024 4.024 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.213 4.213 21 C 0.116 3.884 22 O -0.340 6.340 23 C 0.018 3.982 24 C -0.164 4.164 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.013 0.987 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.020 0.980 34 H 0.271 0.729 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 7.021 9.017 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.135 4.135 4 C 0.018 3.982 5 N -0.167 5.167 6 C -0.493 4.493 7 H 0.128 0.872 8 C -0.199 4.199 9 N -0.503 5.503 10 Si 0.804 3.196 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.186 1.186 14 C 0.232 3.768 15 O -0.525 6.525 16 C -0.117 4.117 17 C -0.025 4.025 18 C -0.179 4.179 19 C -0.096 4.096 20 C -0.232 4.232 21 C 0.071 3.929 22 O -0.254 6.254 23 C -0.076 4.076 24 C -0.183 4.183 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.485 6.536 9.300 11.463 hybrid contribution 0.326 -0.077 -0.813 0.879 sum 1.811 6.459 8.487 10.818 Atomic orbital electron populations 1.21665 0.94784 1.01923 1.01231 1.21314 0.96674 0.95930 1.00738 1.21605 0.95172 0.97087 0.99644 1.21210 0.94939 0.83221 0.98830 1.44058 1.55069 1.11543 1.06066 1.20000 1.39553 1.06583 0.83145 0.87183 1.25924 0.96127 0.96805 1.01092 1.70240 1.24477 1.28232 1.27349 0.85152 0.78218 0.79162 0.77072 1.20550 1.20987 1.18562 1.20492 0.83968 0.88933 0.83362 1.90508 1.57504 1.71620 1.32893 1.20408 1.03622 0.93433 0.94232 1.19350 0.93419 0.94891 0.94823 1.21108 0.97753 1.01614 0.97451 1.21207 0.98319 0.97413 0.92688 1.21456 0.93561 1.05893 1.02272 1.19037 0.87021 0.96130 0.90731 1.86034 1.35440 1.76900 1.27063 1.23352 1.05054 0.99451 0.79720 1.20293 0.99791 1.05097 0.93124 0.93436 0.93178 0.91155 0.92292 0.93273 0.96834 0.90711 0.89661 0.96147 0.91872 0.88120 0.88405 0.85911 0.82766 0.82582 0.86320 0.91188 0.92002 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.71 16 2 C -0.11 -4.15 5.93 30.60 0.18 -3.97 16 3 C -0.10 -4.53 5.02 30.59 0.15 -4.37 16 4 C 0.14 7.13 4.52 86.38 0.39 7.52 16 5 N -0.45 -23.20 2.64 -635.56 -1.68 -24.88 16 6 C -0.37 -18.17 9.25 84.04 0.78 -17.39 16 7 H 0.11 5.09 6.47 -2.91 -0.02 5.07 16 8 C 0.00 0.22 4.88 84.93 0.41 0.64 16 9 N -0.87 -42.67 8.72 21.66 0.19 -42.48 16 10 Si 0.98 38.27 29.63 68.60 2.03 40.30 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 12 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 13 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 14 C 0.44 22.27 7.57 87.66 0.66 22.93 16 15 O -0.64 -35.60 15.73 -3.06 -0.05 -35.64 16 16 C -0.08 -3.17 4.21 29.10 0.12 -3.04 16 17 C -0.02 -0.93 4.37 -19.88 -0.09 -1.02 16 18 C -0.16 -5.49 9.70 22.28 0.22 -5.27 16 19 C -0.08 -2.18 10.04 22.25 0.22 -1.96 16 20 C -0.21 -5.74 9.04 22.37 0.20 -5.54 16 21 C 0.12 3.73 6.69 22.51 0.15 3.89 16 22 O -0.34 -9.80 10.50 -92.43 -0.97 -10.77 16 23 C 0.02 0.31 9.81 113.37 1.11 1.43 16 24 C -0.16 -6.13 9.64 22.36 0.22 -5.91 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.07 3.79 6.41 -2.39 -0.02 3.77 16 32 H 0.09 4.41 5.81 -2.39 -0.01 4.40 16 33 H 0.02 1.06 7.64 -2.39 -0.02 1.04 16 34 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 35 H 0.10 3.87 7.96 -2.39 -0.02 3.86 16 36 H 0.10 3.74 7.73 -2.39 -0.02 3.73 16 37 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 38 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.16 2.99 6.30 -2.91 -0.02 2.97 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 42 H 0.06 0.96 7.65 -2.39 -0.02 0.94 16 43 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -63.91 352.24 5.96 -57.95 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.99 Total: 31.31 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.45 Total: -15.78 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.49 Total: -67.36 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.02 Total: -46.41 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.91 5.96 -57.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142843370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.094 kcal (2) G-P(sol) polarization free energy of solvation -63.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds