Wall clock time and date at job start Tue Mar 31 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 C 1.52999 * 109.47217 * 184.10231 * 3 2 1 5 5 N 1.46503 * 109.47247 * 181.20395 * 4 3 2 6 6 C 1.37096 * 120.00040 * 276.60529 * 5 4 3 7 7 H 1.07995 * 120.00290 * 33.86896 * 6 5 4 8 8 C 1.38950 * 119.99479 * 213.86962 * 6 5 4 9 9 N 1.31415 * 120.00258 * 20.29737 * 8 6 5 10 10 Si 1.86796 * 119.99862 * 200.29298 * 8 6 5 11 11 H 1.48503 * 109.47327 * 5.00499 * 10 8 6 12 12 H 1.48499 * 109.47120 * 125.00517 * 10 8 6 13 13 H 1.48509 * 109.47269 * 245.00528 * 10 8 6 14 14 C 1.34775 * 119.99444 * 96.59988 * 5 4 3 15 15 O 1.21293 * 119.99654 * 186.65597 * 14 5 4 16 16 C 1.50698 * 120.00208 * 6.65857 * 14 5 4 17 17 H 1.08999 * 109.47247 * 45.43364 * 16 14 5 18 18 O 1.42901 * 109.46970 * 165.43274 * 16 14 5 19 19 C 1.42902 * 113.99768 * 269.99907 * 18 16 14 20 20 C 1.50701 * 109.47275 * 285.42917 * 16 14 5 21 21 C 1.38240 * 119.99963 * 109.87207 * 20 16 14 22 22 C 1.38230 * 120.00185 * 180.02562 * 21 20 16 23 23 C 1.38241 * 119.99737 * 359.95494 * 22 21 20 24 24 C 1.38233 * 119.99993 * 0.02562 * 23 22 21 25 25 C 1.38232 * 119.99873 * 289.85405 * 20 16 14 26 26 H 1.09004 * 109.46812 * 65.05461 * 1 2 3 27 27 H 1.08993 * 109.47138 * 185.05915 * 1 2 3 28 28 H 1.09004 * 109.46687 * 305.06337 * 1 2 3 29 29 H 1.09006 * 109.47149 * 239.99637 * 2 1 3 30 30 H 1.09001 * 109.46779 * 120.00164 * 2 1 3 31 31 H 1.08998 * 109.47031 * 64.10136 * 3 2 1 32 32 H 1.08999 * 109.46959 * 304.10046 * 3 2 1 33 33 H 1.09006 * 109.46824 * 61.20672 * 4 3 2 34 34 H 1.08995 * 109.47123 * 301.21121 * 4 3 2 35 35 H 0.96997 * 119.99965 * 184.95709 * 9 8 6 36 36 H 1.08996 * 109.47297 * 299.99619 * 19 18 16 37 37 H 1.08997 * 109.47201 * 60.00246 * 19 18 16 38 38 H 1.09003 * 109.46951 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99688 * 359.97438 * 21 20 16 40 40 H 1.07998 * 120.00279 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99476 * 179.71654 * 23 22 21 42 42 H 1.08004 * 119.99602 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00815 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5666 1.4436 -0.1032 5 7 4.0570 2.8238 -0.0743 6 6 4.0786 3.5679 -1.2255 7 1 3.3114 3.4289 -1.9728 8 6 5.0876 4.5009 -1.4308 9 7 6.2133 4.4100 -0.7588 10 14 4.8441 5.8843 -2.6621 11 1 3.4581 5.8362 -3.1931 12 1 5.0723 7.1895 -1.9917 13 1 5.8084 5.7270 -3.7806 14 6 4.4868 3.3620 1.0842 15 8 4.7786 4.5382 1.1350 16 6 4.6048 2.5024 2.3164 17 1 5.0909 1.5617 2.0579 18 8 5.3829 3.1858 3.3011 19 6 6.7850 2.9219 3.2197 20 6 3.2303 2.2230 2.8675 21 6 2.6969 0.9505 2.7820 22 6 1.4359 0.6943 3.2871 23 6 0.7087 1.7104 3.8785 24 6 1.2423 2.9827 3.9644 25 6 2.5031 3.2390 3.4589 26 1 -0.3633 0.4334 -0.9318 27 1 -0.3633 -1.0236 0.0906 28 1 -0.3633 0.5904 0.8412 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7380 1.9346 0.9244 32 1 1.6180 1.9771 -0.8510 33 1 3.8679 0.9705 -1.0379 34 1 3.9879 0.8906 0.7362 35 1 6.8887 5.1004 -0.8483 36 1 6.9623 1.8549 3.3534 37 1 7.1571 3.2326 2.2434 38 1 7.3051 3.4769 4.0005 39 1 3.2651 0.1568 2.3198 40 1 1.0190 -0.2997 3.2199 41 1 -0.2783 1.5112 4.2690 42 1 0.6739 3.7765 4.4261 43 1 2.9201 4.2330 3.5264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143102213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:14 Heat of formation + Delta-G solvation = -39.807380 kcal Electronic energy + Delta-G solvation = -25106.958081 eV Core-core repulsion = 21732.075943 eV Total energy + Delta-G solvation = -3374.882138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80226 -37.90272 -36.72717 -35.21830 -33.27790 -32.18882 -31.14773 -30.56277 -28.13398 -27.12260 -25.75846 -24.10559 -22.88064 -22.24805 -21.30662 -20.64688 -19.22080 -17.06250 -16.57417 -15.86276 -15.84590 -15.32115 -14.95975 -14.59548 -14.14179 -14.06706 -13.76673 -13.66452 -13.46320 -13.04104 -12.76284 -12.66325 -12.33621 -12.17395 -11.84281 -11.63904 -11.34066 -11.01486 -10.95836 -10.88408 -10.74887 -10.70409 -10.62867 -10.53941 -10.29068 -10.05968 -9.87684 -9.54622 -8.78884 -8.55260 -8.53750 -7.72408 -6.97231 -6.04703 -3.75434 1.62169 1.74077 3.34481 3.44379 3.45878 4.01905 4.16775 4.29577 4.53904 5.02658 5.11396 5.21343 5.29266 5.32246 5.37475 5.41455 5.43156 5.51111 5.63645 5.75147 5.81703 5.83862 5.93339 5.96828 6.07005 6.08759 6.19181 6.21026 6.25293 6.32363 6.35255 6.37662 6.38281 6.50400 6.72546 6.78446 6.82029 6.95582 6.97563 7.29151 7.60798 7.69323 8.27139 9.09488 9.26733 9.73119 10.38375 11.01849 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.007337 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.795978 B = 3815.591133 C = 4911.625306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.105 3.895 5 N -0.452 5.452 6 C -0.338 4.338 7 H 0.080 0.920 8 C 0.063 3.937 9 N -0.824 5.824 10 Si 0.905 3.095 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.287 1.287 14 C 0.453 3.547 15 O -0.512 6.512 16 C 0.116 3.884 17 H 0.068 0.932 18 O -0.362 6.362 19 C 0.035 3.965 20 C -0.066 4.066 21 C -0.102 4.102 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.083 4.083 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.031 0.969 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 -9.972 6.974 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.176 4.176 4 C -0.020 4.020 5 N -0.175 5.175 6 C -0.464 4.464 7 H 0.098 0.902 8 C -0.147 4.147 9 N -0.459 5.459 10 Si 0.732 3.268 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.214 1.214 14 C 0.239 3.761 15 O -0.388 6.388 16 C 0.055 3.945 17 H 0.086 0.914 18 O -0.279 6.279 19 C -0.062 4.062 20 C -0.067 4.067 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.101 4.101 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.967 -9.169 7.130 13.544 hybrid contribution 0.166 0.473 -0.846 0.984 sum -6.801 -8.696 6.284 12.703 Atomic orbital electron populations 1.21736 0.96400 1.00690 1.01718 1.21518 0.95470 0.97548 1.01380 1.22112 0.96865 0.95755 1.02855 1.21593 0.93309 0.86367 1.00697 1.43326 1.58327 1.09144 1.06737 1.19050 1.09298 1.21057 0.97015 0.90246 1.24997 0.93364 0.99282 0.97079 1.69907 1.04539 1.31599 1.39878 0.86266 0.78071 0.82439 0.79990 1.19722 1.20845 1.21373 1.19875 0.84792 0.88459 0.82950 1.90517 1.49270 1.16062 1.82924 1.20873 0.89319 0.95016 0.89330 0.91383 1.87856 1.17631 1.70539 1.51878 1.22741 0.81974 0.98754 1.02698 1.19540 0.94938 0.93666 0.98536 1.20971 0.96108 0.95658 0.99262 1.20926 0.94691 0.98938 0.99538 1.21045 0.99541 0.93364 1.00228 1.21099 0.95741 0.96832 1.00733 1.21064 0.93720 0.99521 0.95830 0.93112 0.93465 0.92769 0.92483 0.92233 0.91327 0.92015 0.91976 0.92894 0.92765 0.95083 0.92554 0.90237 0.86153 0.86385 0.86656 0.86431 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.57 5.62 -26.73 -0.15 -1.72 16 3 C -0.14 -2.33 4.48 -26.73 -0.12 -2.45 16 4 C 0.10 2.05 4.85 -4.04 -0.02 2.03 16 5 N -0.45 -11.34 2.59 -114.81 -0.30 -11.63 16 6 C -0.34 -9.35 9.34 -14.93 -0.14 -9.49 16 7 H 0.08 2.13 7.91 -52.49 -0.42 1.71 16 8 C 0.06 1.78 4.35 -17.47 -0.08 1.71 16 9 N -0.82 -24.54 11.11 55.50 0.62 -23.93 16 10 Si 0.91 22.29 29.60 -169.99 -5.03 17.26 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.45 11.71 5.96 -10.99 -0.07 11.64 16 15 O -0.51 -15.53 13.78 -13.93 -0.19 -15.72 16 16 C 0.12 2.44 1.99 -29.04 -0.06 2.38 16 17 H 0.07 1.32 6.33 -51.93 -0.33 0.99 16 18 O -0.36 -7.74 9.61 -54.71 -0.53 -8.27 16 19 C 0.03 0.64 10.81 101.05 1.09 1.73 16 20 C -0.07 -1.20 3.53 -104.62 -0.37 -1.57 16 21 C -0.10 -1.50 5.13 -39.58 -0.20 -1.70 16 22 C -0.12 -1.56 9.26 -39.58 -0.37 -1.93 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.08 -1.50 9.27 -39.58 -0.37 -1.87 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.70 5.99 -51.93 -0.31 0.39 16 31 H 0.07 1.24 5.34 -51.93 -0.28 0.96 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.05 0.93 3.83 -51.93 -0.20 0.73 16 35 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 36 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.12 1.59 6.05 -52.48 -0.32 1.27 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 43 H 0.13 2.51 8.04 -52.49 -0.42 2.08 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.46 341.75 -8.02 -41.48 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.47 Total: 2.47 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.27 Total: -6.80 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.32 Total: -35.56 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.72 Total: -23.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.46 -8.02 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143102213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.672 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds