Wall clock time and date at job start Tue Mar 31 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47485 * 2 1 4 4 C 1.52999 * 109.47217 * 184.10231 * 3 2 1 5 5 N 1.46503 * 109.47247 * 181.20395 * 4 3 2 6 6 C 1.37096 * 120.00040 * 276.60529 * 5 4 3 7 7 H 1.07995 * 120.00290 * 33.86896 * 6 5 4 8 8 C 1.38950 * 119.99479 * 213.86962 * 6 5 4 9 9 N 1.31415 * 120.00258 * 20.29737 * 8 6 5 10 10 Si 1.86796 * 119.99862 * 200.29298 * 8 6 5 11 11 H 1.48503 * 109.47327 * 5.00499 * 10 8 6 12 12 H 1.48499 * 109.47120 * 125.00517 * 10 8 6 13 13 H 1.48509 * 109.47269 * 245.00528 * 10 8 6 14 14 C 1.34775 * 119.99444 * 96.59988 * 5 4 3 15 15 O 1.21293 * 119.99654 * 186.65597 * 14 5 4 16 16 C 1.50698 * 120.00208 * 6.65857 * 14 5 4 17 17 H 1.08999 * 109.47247 * 45.43364 * 16 14 5 18 18 O 1.42901 * 109.46970 * 165.43274 * 16 14 5 19 19 C 1.42902 * 113.99768 * 269.99907 * 18 16 14 20 20 C 1.50701 * 109.47275 * 285.42917 * 16 14 5 21 21 C 1.38240 * 119.99963 * 109.87207 * 20 16 14 22 22 C 1.38230 * 120.00185 * 180.02562 * 21 20 16 23 23 C 1.38241 * 119.99737 * 359.95494 * 22 21 20 24 24 C 1.38233 * 119.99993 * 0.02562 * 23 22 21 25 25 C 1.38232 * 119.99873 * 289.85405 * 20 16 14 26 26 H 1.09004 * 109.46812 * 65.05461 * 1 2 3 27 27 H 1.08993 * 109.47138 * 185.05915 * 1 2 3 28 28 H 1.09004 * 109.46687 * 305.06337 * 1 2 3 29 29 H 1.09006 * 109.47149 * 239.99637 * 2 1 3 30 30 H 1.09001 * 109.46779 * 120.00164 * 2 1 3 31 31 H 1.08998 * 109.47031 * 64.10136 * 3 2 1 32 32 H 1.08999 * 109.46959 * 304.10046 * 3 2 1 33 33 H 1.09006 * 109.46824 * 61.20672 * 4 3 2 34 34 H 1.08995 * 109.47123 * 301.21121 * 4 3 2 35 35 H 0.96997 * 119.99965 * 184.95709 * 9 8 6 36 36 H 1.08996 * 109.47297 * 299.99619 * 19 18 16 37 37 H 1.08997 * 109.47201 * 60.00246 * 19 18 16 38 38 H 1.09003 * 109.46951 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99688 * 359.97438 * 21 20 16 40 40 H 1.07998 * 120.00279 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99476 * 179.71654 * 23 22 21 42 42 H 1.08004 * 119.99602 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00815 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5666 1.4436 -0.1032 5 7 4.0570 2.8238 -0.0743 6 6 4.0786 3.5679 -1.2255 7 1 3.3114 3.4289 -1.9728 8 6 5.0876 4.5009 -1.4308 9 7 6.2133 4.4100 -0.7588 10 14 4.8441 5.8843 -2.6621 11 1 3.4581 5.8362 -3.1931 12 1 5.0723 7.1895 -1.9917 13 1 5.8084 5.7270 -3.7806 14 6 4.4868 3.3620 1.0842 15 8 4.7786 4.5382 1.1350 16 6 4.6048 2.5024 2.3164 17 1 5.0909 1.5617 2.0579 18 8 5.3829 3.1858 3.3011 19 6 6.7850 2.9219 3.2197 20 6 3.2303 2.2230 2.8675 21 6 2.6969 0.9505 2.7820 22 6 1.4359 0.6943 3.2871 23 6 0.7087 1.7104 3.8785 24 6 1.2423 2.9827 3.9644 25 6 2.5031 3.2390 3.4589 26 1 -0.3633 0.4334 -0.9318 27 1 -0.3633 -1.0236 0.0906 28 1 -0.3633 0.5904 0.8412 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7380 1.9346 0.9244 32 1 1.6180 1.9771 -0.8510 33 1 3.8679 0.9705 -1.0379 34 1 3.9879 0.8906 0.7362 35 1 6.8887 5.1004 -0.8483 36 1 6.9623 1.8549 3.3534 37 1 7.1571 3.2326 2.2434 38 1 7.3051 3.4769 4.0005 39 1 3.2651 0.1568 2.3198 40 1 1.0190 -0.2997 3.2199 41 1 -0.2783 1.5112 4.2690 42 1 0.6739 3.7765 4.4261 43 1 2.9201 4.2330 3.5264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143102213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:13 Heat of formation + Delta-G solvation = -59.704707 kcal Electronic energy + Delta-G solvation = -25107.820894 eV Core-core repulsion = 21732.075943 eV Total energy + Delta-G solvation = -3375.744951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32278 -39.41717 -38.36964 -36.80171 -35.02553 -33.88648 -32.71096 -31.70243 -29.55650 -28.65704 -27.45565 -25.86966 -24.30225 -23.40318 -22.67282 -21.86542 -21.05022 -18.76547 -18.02130 -17.68060 -17.47688 -16.66428 -16.52946 -16.23685 -15.61406 -15.42953 -15.35254 -15.19693 -15.02166 -14.22324 -14.16838 -13.96354 -13.78474 -13.48140 -13.43623 -13.19676 -12.95813 -12.86992 -12.65765 -12.32884 -12.17018 -12.13735 -12.07917 -11.91393 -11.79109 -11.61792 -11.26922 -11.20446 -10.76678 -10.00099 -9.68247 -9.50948 -8.99491 -8.19302 -5.92816 0.45026 0.59271 1.33978 1.41169 1.49184 2.29525 2.43675 2.67305 2.92661 3.28435 3.38355 3.74999 3.95533 4.06926 4.17244 4.20087 4.26336 4.33609 4.35548 4.42595 4.48557 4.53538 4.58014 4.72670 4.73441 4.79100 4.82965 4.97217 5.04540 5.09484 5.13575 5.21802 5.25055 5.44063 5.46500 5.52859 5.61959 5.65395 5.68834 5.71722 6.06055 6.16251 6.21524 7.00508 7.25463 7.70314 8.39701 8.86127 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.007337 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.795978 B = 3815.591133 C = 4911.625306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.466 5.466 6 C -0.352 4.352 7 H 0.082 0.918 8 C 0.011 3.989 9 N -0.857 5.857 10 Si 0.963 3.037 11 H -0.260 1.260 12 H -0.298 1.298 13 H -0.272 1.272 14 C 0.445 3.555 15 O -0.573 6.573 16 C 0.126 3.874 17 H 0.083 0.917 18 O -0.382 6.382 19 C 0.034 3.966 20 C -0.090 4.090 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.114 4.114 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.256 0.744 36 H 0.064 0.936 37 H 0.016 0.984 38 H 0.103 0.897 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.134 0.866 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 -13.234 7.729 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.163 4.163 4 C -0.021 4.021 5 N -0.188 5.188 6 C -0.480 4.480 7 H 0.100 0.900 8 C -0.195 4.195 9 N -0.494 5.494 10 Si 0.789 3.211 11 H -0.184 1.184 12 H -0.225 1.225 13 H -0.198 1.198 14 C 0.233 3.767 15 O -0.453 6.453 16 C 0.065 3.935 17 H 0.100 0.900 18 O -0.300 6.300 19 C -0.062 4.062 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.133 4.133 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.121 0.879 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.152 0.848 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.525 -12.483 7.863 17.561 hybrid contribution 0.884 1.439 -1.020 1.973 sum -8.641 -11.044 6.844 15.604 Atomic orbital electron populations 1.21716 0.94995 1.02251 1.01338 1.21492 0.96594 0.94336 1.02776 1.21974 0.94532 0.98571 1.01235 1.21840 0.95191 0.83556 1.01560 1.43602 1.58100 1.11188 1.05950 1.19339 1.08940 1.21897 0.97809 0.90032 1.25844 0.93277 1.01458 0.98908 1.70012 1.05284 1.32007 1.42052 0.85364 0.78843 0.78760 0.78166 1.18365 1.22478 1.19798 1.20816 0.83093 0.88445 0.84375 1.90461 1.51655 1.18855 1.84316 1.20770 0.91499 0.93911 0.87344 0.89975 1.87847 1.18970 1.71383 1.51789 1.22866 0.80783 1.01216 1.01347 1.19426 0.93575 0.95472 1.00571 1.21171 0.97176 0.94345 0.99138 1.21388 0.93317 1.00688 0.97316 1.21499 1.00829 0.92050 0.98566 1.21314 0.94394 0.98738 1.00266 1.20939 0.95748 0.98110 0.98472 0.93988 0.90894 0.92776 0.91875 0.90068 0.92261 0.94444 0.92075 0.90680 0.93512 0.91720 0.96483 0.87878 0.84310 0.82250 0.82816 0.84818 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.11 -2.52 5.62 30.59 0.17 -2.35 16 3 C -0.12 -4.04 4.48 30.59 0.14 -3.90 16 4 C 0.10 3.90 4.85 86.38 0.42 4.32 16 5 N -0.47 -24.04 2.59 -635.54 -1.64 -25.68 16 6 C -0.35 -20.15 9.34 84.04 0.79 -19.36 16 7 H 0.08 4.48 7.91 -2.91 -0.02 4.46 16 8 C 0.01 0.66 4.35 84.93 0.37 1.03 16 9 N -0.86 -53.64 11.11 21.66 0.24 -53.40 16 10 Si 0.96 47.40 29.60 68.60 2.03 49.43 16 11 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.44 24.00 5.96 87.66 0.52 24.53 16 15 O -0.57 -37.01 13.78 15.55 0.21 -36.80 16 16 C 0.13 5.40 1.99 29.10 0.06 5.46 16 17 H 0.08 3.17 6.33 -2.39 -0.02 3.16 16 18 O -0.38 -16.99 9.61 -130.36 -1.25 -18.25 16 19 C 0.03 1.27 10.81 113.37 1.23 2.50 16 20 C -0.09 -3.21 3.53 -19.86 -0.07 -3.28 16 21 C -0.10 -2.62 5.13 22.27 0.11 -2.51 16 22 C -0.11 -2.20 9.26 22.27 0.21 -2.00 16 23 C -0.11 -2.35 10.05 22.27 0.22 -2.12 16 24 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 25 C -0.11 -4.20 9.27 22.27 0.21 -3.99 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 1.46 5.99 -2.39 -0.01 1.45 16 31 H 0.06 2.05 5.34 -2.39 -0.01 2.03 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 2.33 8.09 -2.38 -0.02 2.31 16 34 H 0.08 2.51 3.83 -2.39 -0.01 2.50 16 35 H 0.26 15.60 8.32 -92.71 -0.77 14.82 16 36 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.14 3.05 6.05 -2.91 -0.02 3.03 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.09 3.77 8.04 -2.91 -0.02 3.75 16 Total: -1.00 -79.31 341.75 5.88 -73.42 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.99 Total: 18.34 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.31 Total: -7.07 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -1.40 Total: -79.08 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.04 Total: -55.04 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -79.31 5.88 -73.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143102213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.720 kcal (2) G-P(sol) polarization free energy of solvation -79.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds