Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46575 * 174.02967 * 4 3 2 6 6 C 1.37098 * 120.00449 * 56.38704 * 5 4 3 7 7 H 1.08002 * 119.99591 * 318.50812 * 6 5 4 8 8 C 1.38946 * 120.00027 * 138.78225 * 6 5 4 9 9 N 1.31412 * 120.00325 * 347.21069 * 8 6 5 10 10 Si 1.86803 * 119.99815 * 167.21490 * 8 6 5 11 11 H 1.48499 * 109.47117 * 89.99921 * 10 8 6 12 12 H 1.48500 * 109.47170 * 209.99853 * 10 8 6 13 13 H 1.48496 * 109.47180 * 329.99862 * 10 8 6 14 14 C 1.34782 * 119.99646 * 236.38373 * 5 4 3 15 15 O 1.21296 * 119.99830 * 175.08089 * 14 5 4 16 16 C 1.50698 * 119.99944 * 355.07707 * 14 5 4 17 17 H 1.08993 * 109.47411 * 319.62317 * 16 14 5 18 18 C 1.53006 * 109.46859 * 79.62467 * 16 14 5 19 19 O 1.42897 * 109.46933 * 199.61752 * 16 14 5 20 20 C 1.35903 * 116.99725 * 155.20100 * 19 16 14 21 21 C 1.38732 * 120.05810 * 4.56251 * 20 19 16 22 22 C 1.38142 * 119.94592 * 179.74264 * 21 20 19 23 23 C 1.38266 * 120.05639 * 0.50432 * 22 21 20 24 24 C 1.38265 * 120.11137 * 359.77087 * 23 22 21 25 25 C 1.38146 * 120.05396 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46682 * 60.00255 * 1 2 3 27 27 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46873 * 300.00352 * 1 2 3 29 29 H 1.09005 * 109.47498 * 239.99880 * 2 1 3 30 30 H 1.09001 * 109.47065 * 120.00417 * 2 1 3 31 31 H 1.08999 * 109.46854 * 59.99970 * 3 2 1 32 32 H 1.08996 * 109.47314 * 299.99781 * 3 2 1 33 33 H 1.08996 * 109.47682 * 54.03160 * 4 3 2 34 34 H 1.08991 * 109.47219 * 294.02332 * 4 3 2 35 35 H 0.96996 * 119.99738 * 185.01914 * 9 8 6 36 36 H 1.09000 * 109.46959 * 49.94167 * 18 16 14 37 37 H 1.08991 * 109.47270 * 169.94260 * 18 16 14 38 38 H 1.08998 * 109.46853 * 289.94265 * 18 16 14 39 39 H 1.08001 * 120.02400 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.97202 * 180.23637 * 22 21 20 41 41 H 1.07998 * 119.94434 * 179.74364 * 23 22 21 42 42 H 1.07995 * 119.97530 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.02585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0584 2.8161 -0.1430 6 6 3.6669 3.7798 0.7500 7 1 2.6411 3.8205 1.0853 8 6 4.5886 4.7076 1.2193 9 7 5.8729 4.5198 1.0140 10 14 4.0020 6.2221 2.1422 11 1 3.9372 5.9222 3.5951 12 1 4.9498 7.3415 1.9096 13 1 2.6528 6.6067 1.6555 14 6 4.8928 3.1324 -1.1532 15 8 5.2263 4.2858 -1.3257 16 6 5.4112 2.0532 -2.0683 17 1 5.6543 1.1664 -1.4831 18 6 4.3395 1.7036 -3.1029 19 8 6.5849 2.5191 -2.7372 20 6 7.4607 1.5766 -3.1748 21 6 7.1522 0.2298 -3.0497 22 6 8.0419 -0.7262 -3.5001 23 6 9.2436 -0.3419 -4.0658 24 6 9.5560 0.9995 -4.1864 25 6 8.6674 1.9595 -3.7423 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.8386 -0.8308 34 1 3.9329 1.0241 0.9394 35 1 6.5204 5.1280 1.4036 36 1 3.9682 2.6184 -3.5647 37 1 4.7705 1.0590 -3.8688 38 1 3.5164 1.1843 -2.6121 39 1 6.2156 -0.0709 -2.6039 40 1 7.8005 -1.7746 -3.4064 41 1 9.9396 -1.0909 -4.4135 42 1 10.4955 1.2972 -4.6282 43 1 8.9121 3.0073 -3.8364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144492251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -40.595660 kcal Electronic energy + Delta-G solvation = -23885.967758 eV Core-core repulsion = 20511.051438 eV Total energy + Delta-G solvation = -3374.916321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04815 -38.44746 -36.86296 -35.39367 -33.37200 -32.28180 -31.16152 -30.43190 -29.32920 -28.17515 -25.38055 -23.82543 -22.89037 -22.37092 -21.56607 -20.66102 -19.26900 -17.93931 -16.60727 -15.97494 -15.73229 -15.30217 -15.13580 -14.85190 -14.61615 -14.00448 -13.85998 -13.77046 -13.35581 -13.12900 -12.99040 -12.80642 -12.44471 -12.21558 -12.01413 -11.68068 -11.40329 -11.36507 -11.20998 -11.03810 -10.91641 -10.80819 -10.73524 -10.59085 -10.47310 -10.31829 -10.11115 -9.98338 -8.83881 -8.78571 -8.06152 -7.81380 -7.06032 -6.06895 -3.85275 1.50504 1.66449 3.28783 3.39052 3.41200 3.48993 3.98799 4.25269 4.34857 4.87270 4.99343 5.06964 5.16757 5.22297 5.23354 5.31443 5.35098 5.42715 5.52944 5.54513 5.64915 5.69140 5.74331 5.83313 5.94641 5.98439 6.02524 6.05226 6.13430 6.19033 6.26632 6.29438 6.38632 6.44923 6.54089 6.61122 6.67211 6.72700 6.87059 6.98983 7.61952 7.83371 8.27534 9.05217 9.19747 9.65034 10.30892 11.01449 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.005571 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.426380 B = 5024.393547 C = 6843.193327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.102 3.898 5 N -0.453 5.453 6 C -0.340 4.340 7 H 0.081 0.919 8 C 0.061 3.939 9 N -0.828 5.828 10 Si 0.915 3.085 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.478 3.522 15 O -0.508 6.508 16 C 0.070 3.930 17 H 0.077 0.923 18 C -0.171 4.171 19 O -0.279 6.279 20 C 0.144 3.856 21 C -0.216 4.216 22 C -0.081 4.081 23 C -0.173 4.173 24 C -0.082 4.082 25 C -0.157 4.157 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -12.365 -6.684 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.167 4.167 4 C -0.022 4.022 5 N -0.177 5.177 6 C -0.467 4.467 7 H 0.099 0.901 8 C -0.149 4.149 9 N -0.463 5.463 10 Si 0.742 3.258 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.263 3.737 15 O -0.383 6.383 16 C 0.010 3.990 17 H 0.095 0.905 18 C -0.228 4.228 19 O -0.190 6.190 20 C 0.098 3.902 21 C -0.235 4.235 22 C -0.099 4.099 23 C -0.191 4.191 24 C -0.100 4.100 25 C -0.176 4.176 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.503 -11.398 -6.816 13.290 hybrid contribution -0.224 0.372 0.647 0.779 sum -0.727 -11.026 -6.169 12.655 Atomic orbital electron populations 1.21753 0.96290 1.00871 1.01820 1.21506 0.95518 0.97557 1.01521 1.21878 0.96406 0.95458 1.02910 1.21601 0.93826 0.86489 1.00261 1.43106 1.44681 1.06276 1.23635 1.18974 0.94975 1.09675 1.23065 0.90127 1.25289 0.94645 0.99092 0.95921 1.69849 1.00693 1.36483 1.39235 0.86156 0.78736 0.82145 0.78735 1.20833 1.21003 1.19636 1.19282 0.84613 0.88298 0.81489 1.90542 1.57477 1.20305 1.69970 1.22466 0.84230 0.98591 0.93734 0.90543 1.22327 0.98696 1.02752 0.99069 1.86290 1.30795 1.32187 1.69770 1.19264 0.90080 0.88123 0.92783 1.21342 1.02364 0.92368 1.07422 1.20887 0.93594 0.98778 0.96666 1.20949 0.97881 0.95946 1.04340 1.20905 0.98462 0.92624 0.98023 1.20494 0.92631 1.00690 1.03762 0.92938 0.93320 0.92779 0.92514 0.92159 0.91118 0.92127 0.92473 0.92876 0.92572 0.91104 0.91978 0.90565 0.85400 0.86195 0.86410 0.85782 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.52 5.93 -26.73 -0.16 -1.68 16 3 C -0.13 -2.06 4.97 -26.73 -0.13 -2.19 16 4 C 0.10 1.93 5.28 -4.04 -0.02 1.91 16 5 N -0.45 -11.18 2.73 -114.81 -0.31 -11.50 16 6 C -0.34 -9.23 8.82 -14.93 -0.13 -9.36 16 7 H 0.08 2.08 6.90 -52.49 -0.36 1.71 16 8 C 0.06 1.73 4.57 -17.47 -0.08 1.65 16 9 N -0.83 -25.12 11.19 55.50 0.62 -24.50 16 10 Si 0.92 22.00 29.57 -169.99 -5.03 16.98 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.48 12.44 6.06 -10.98 -0.07 12.37 16 15 O -0.51 -15.73 14.15 -13.56 -0.19 -15.92 16 16 C 0.07 1.44 1.77 -27.88 -0.05 1.39 16 17 H 0.08 1.45 5.11 -51.93 -0.27 1.19 16 18 C -0.17 -2.81 8.82 37.16 0.33 -2.49 16 19 O -0.28 -6.12 9.41 -38.53 -0.36 -6.48 16 20 C 0.14 2.62 6.54 -39.22 -0.26 2.37 16 21 C -0.22 -3.32 8.23 -39.43 -0.32 -3.64 16 22 C -0.08 -1.05 10.04 -39.61 -0.40 -1.44 16 23 C -0.17 -2.12 10.04 -39.56 -0.40 -2.52 16 24 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 25 C -0.16 -2.55 9.99 -39.43 -0.39 -2.94 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.23 7.23 -51.93 -0.38 0.85 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.93 4.32 -51.93 -0.22 0.71 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.26 7.69 8.32 -40.82 -0.34 7.35 16 36 H 0.07 1.26 8.11 -51.93 -0.42 0.83 16 37 H 0.06 0.89 7.10 -51.93 -0.37 0.52 16 38 H 0.08 1.10 6.49 -51.93 -0.34 0.76 16 39 H 0.13 1.81 5.59 -52.49 -0.29 1.52 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.16 347.78 -8.58 -42.74 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.43 Total: 2.80 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.11 Total: -9.35 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.31 Total: -35.99 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.55 Total: -22.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.16 -8.58 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144492251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.141 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds