Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 C 1.53001 * 109.46947 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46575 * 174.02967 * 4 3 2 6 6 C 1.37098 * 120.00449 * 56.38704 * 5 4 3 7 7 H 1.08002 * 119.99591 * 318.50812 * 6 5 4 8 8 C 1.38946 * 120.00027 * 138.78225 * 6 5 4 9 9 N 1.31412 * 120.00325 * 347.21069 * 8 6 5 10 10 Si 1.86803 * 119.99815 * 167.21490 * 8 6 5 11 11 H 1.48499 * 109.47117 * 89.99921 * 10 8 6 12 12 H 1.48500 * 109.47170 * 209.99853 * 10 8 6 13 13 H 1.48496 * 109.47180 * 329.99862 * 10 8 6 14 14 C 1.34782 * 119.99646 * 236.38373 * 5 4 3 15 15 O 1.21296 * 119.99830 * 175.08089 * 14 5 4 16 16 C 1.50698 * 119.99944 * 355.07707 * 14 5 4 17 17 H 1.08993 * 109.47411 * 319.62317 * 16 14 5 18 18 C 1.53006 * 109.46859 * 79.62467 * 16 14 5 19 19 O 1.42897 * 109.46933 * 199.61752 * 16 14 5 20 20 C 1.35903 * 116.99725 * 155.20100 * 19 16 14 21 21 C 1.38732 * 120.05810 * 4.56251 * 20 19 16 22 22 C 1.38142 * 119.94592 * 179.74264 * 21 20 19 23 23 C 1.38266 * 120.05639 * 0.50432 * 22 21 20 24 24 C 1.38265 * 120.11137 * 359.77087 * 23 22 21 25 25 C 1.38146 * 120.05396 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46682 * 60.00255 * 1 2 3 27 27 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46873 * 300.00352 * 1 2 3 29 29 H 1.09005 * 109.47498 * 239.99880 * 2 1 3 30 30 H 1.09001 * 109.47065 * 120.00417 * 2 1 3 31 31 H 1.08999 * 109.46854 * 59.99970 * 3 2 1 32 32 H 1.08996 * 109.47314 * 299.99781 * 3 2 1 33 33 H 1.08996 * 109.47682 * 54.03160 * 4 3 2 34 34 H 1.08991 * 109.47219 * 294.02332 * 4 3 2 35 35 H 0.96996 * 119.99738 * 185.01914 * 9 8 6 36 36 H 1.09000 * 109.46959 * 49.94167 * 18 16 14 37 37 H 1.08991 * 109.47270 * 169.94260 * 18 16 14 38 38 H 1.08998 * 109.46853 * 289.94265 * 18 16 14 39 39 H 1.08001 * 120.02400 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.97202 * 180.23637 * 22 21 20 41 41 H 1.07998 * 119.94434 * 179.74364 * 23 22 21 42 42 H 1.07995 * 119.97530 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.02585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0584 2.8161 -0.1430 6 6 3.6669 3.7798 0.7500 7 1 2.6411 3.8205 1.0853 8 6 4.5886 4.7076 1.2193 9 7 5.8729 4.5198 1.0140 10 14 4.0020 6.2221 2.1422 11 1 3.9372 5.9222 3.5951 12 1 4.9498 7.3415 1.9096 13 1 2.6528 6.6067 1.6555 14 6 4.8928 3.1324 -1.1532 15 8 5.2263 4.2858 -1.3257 16 6 5.4112 2.0532 -2.0683 17 1 5.6543 1.1664 -1.4831 18 6 4.3395 1.7036 -3.1029 19 8 6.5849 2.5191 -2.7372 20 6 7.4607 1.5766 -3.1748 21 6 7.1522 0.2298 -3.0497 22 6 8.0419 -0.7262 -3.5001 23 6 9.2436 -0.3419 -4.0658 24 6 9.5560 0.9995 -4.1864 25 6 8.6674 1.9595 -3.7423 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.8386 -0.8308 34 1 3.9329 1.0241 0.9394 35 1 6.5204 5.1280 1.4036 36 1 3.9682 2.6184 -3.5647 37 1 4.7705 1.0590 -3.8688 38 1 3.5164 1.1843 -2.6121 39 1 6.2156 -0.0709 -2.6039 40 1 7.8005 -1.7746 -3.4064 41 1 9.9396 -1.0909 -4.4135 42 1 10.4955 1.2972 -4.6282 43 1 8.9121 3.0073 -3.8364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144492251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -60.488067 kcal Electronic energy + Delta-G solvation = -23886.830358 eV Core-core repulsion = 20511.051438 eV Total energy + Delta-G solvation = -3375.778920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47932 -40.09175 -38.22583 -36.98390 -35.07280 -34.01071 -32.70366 -31.64246 -30.52619 -29.57172 -27.29914 -25.30823 -24.20224 -23.55520 -22.93872 -21.88128 -20.99620 -19.30109 -18.45529 -17.71905 -16.99547 -16.75634 -16.57543 -16.34436 -16.15446 -15.63765 -15.23558 -15.18994 -14.74100 -14.39126 -14.28541 -14.13737 -13.78138 -13.58209 -13.32806 -13.24835 -12.95138 -12.88122 -12.67866 -12.64147 -12.41140 -12.19727 -12.13808 -12.03823 -11.86869 -11.72236 -11.64100 -11.30371 -10.82073 -10.02124 -9.91009 -9.16309 -9.04553 -8.20417 -6.01304 0.42059 0.53018 1.34968 1.42992 1.50446 1.94812 2.37909 2.44134 2.88689 3.15573 3.27801 3.69055 3.88898 3.98436 4.03882 4.06880 4.10831 4.25836 4.30653 4.38062 4.45537 4.49645 4.54559 4.63844 4.68248 4.70969 4.80797 4.90128 5.03148 5.06935 5.10008 5.11983 5.19783 5.39373 5.43727 5.45706 5.50890 5.51221 5.60290 5.61359 5.92888 6.16073 6.52241 6.99151 7.20803 7.63036 8.32721 8.88365 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.005571 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.426380 B = 5024.393547 C = 6843.193327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.098 3.902 5 N -0.464 5.464 6 C -0.349 4.349 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.872 5.872 10 Si 0.977 3.023 11 H -0.261 1.261 12 H -0.297 1.297 13 H -0.263 1.263 14 C 0.461 3.539 15 O -0.574 6.574 16 C 0.081 3.919 17 H 0.091 0.909 18 C -0.159 4.159 19 O -0.322 6.322 20 C 0.103 3.897 21 C -0.222 4.222 22 C -0.078 4.078 23 C -0.162 4.162 24 C -0.079 4.079 25 C -0.183 4.183 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.257 0.743 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -15.927 -7.425 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.025 4.025 5 N -0.187 5.187 6 C -0.477 4.477 7 H 0.107 0.893 8 C -0.201 4.201 9 N -0.508 5.508 10 Si 0.802 3.198 11 H -0.186 1.186 12 H -0.224 1.224 13 H -0.187 1.187 14 C 0.248 3.752 15 O -0.454 6.454 16 C 0.021 3.979 17 H 0.109 0.891 18 C -0.216 4.216 19 O -0.236 6.236 20 C 0.057 3.943 21 C -0.240 4.240 22 C -0.095 4.095 23 C -0.180 4.180 24 C -0.097 4.097 25 C -0.202 4.202 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.172 0.828 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.042 -15.023 -7.541 16.842 hybrid contribution -0.005 1.366 0.804 1.585 sum -1.047 -13.657 -6.737 15.264 Atomic orbital electron populations 1.21743 0.95141 1.02163 1.01590 1.21467 0.96452 0.94632 1.02826 1.21781 0.94113 0.98171 1.01660 1.21871 0.95672 0.83619 1.01296 1.43427 1.44233 1.08261 1.22806 1.19368 0.95303 1.10434 1.22570 0.89280 1.26211 0.94691 1.01998 0.97241 1.70004 1.01932 1.37520 1.41357 0.85197 0.78009 0.78060 0.78566 1.18623 1.22396 1.18728 1.20295 0.83983 0.88951 0.81933 1.90484 1.59656 1.23262 1.71963 1.22264 0.85266 0.96296 0.94040 0.89115 1.22268 0.98117 1.02525 0.98687 1.86210 1.31897 1.34629 1.70822 1.19635 0.90447 0.88982 0.95195 1.21524 1.03461 0.91424 1.07621 1.21356 0.93025 1.00042 0.95120 1.21466 0.98079 0.96145 1.02299 1.21280 0.98727 0.92685 0.96992 1.20695 0.93238 1.01071 1.05160 0.92954 0.91247 0.93340 0.90608 0.91455 0.92924 0.92882 0.89631 0.93142 0.93411 0.93056 0.89306 0.88179 0.84476 0.82526 0.82551 0.82845 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.16 16 2 C -0.12 -2.53 5.93 30.59 0.18 -2.35 16 3 C -0.12 -3.68 4.97 30.59 0.15 -3.53 16 4 C 0.10 3.62 5.28 86.38 0.46 4.08 16 5 N -0.46 -23.48 2.73 -635.54 -1.74 -25.22 16 6 C -0.35 -19.47 8.82 84.04 0.74 -18.73 16 7 H 0.09 4.67 6.90 -2.91 -0.02 4.65 16 8 C 0.00 0.23 4.57 84.93 0.39 0.61 16 9 N -0.87 -55.62 11.19 21.66 0.24 -55.38 16 10 Si 0.98 46.66 29.57 68.60 2.03 48.68 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 14 C 0.46 24.98 6.06 87.66 0.53 25.51 16 15 O -0.57 -37.76 14.15 15.18 0.21 -37.55 16 16 C 0.08 3.39 1.77 29.85 0.05 3.44 16 17 H 0.09 3.42 5.11 -2.39 -0.01 3.41 16 18 C -0.16 -5.09 8.82 71.98 0.64 -4.45 16 19 O -0.32 -14.83 9.41 -74.19 -0.70 -15.53 16 20 C 0.10 3.78 6.54 22.51 0.15 3.93 16 21 C -0.22 -6.38 8.23 22.37 0.18 -6.20 16 22 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 23 C -0.16 -3.30 10.04 22.28 0.22 -3.07 16 24 C -0.08 -1.91 10.04 22.25 0.22 -1.68 16 25 C -0.18 -6.05 9.99 22.37 0.22 -5.82 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.80 7.23 -2.39 -0.02 1.79 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.62 4.32 -2.39 -0.01 2.61 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.26 15.87 8.32 -92.71 -0.77 15.10 16 36 H 0.05 1.84 8.11 -2.39 -0.02 1.82 16 37 H 0.09 2.37 7.10 -2.39 -0.02 2.35 16 38 H 0.10 2.65 6.49 -2.39 -0.02 2.63 16 39 H 0.14 3.55 5.59 -2.91 -0.02 3.53 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -81.01 347.78 6.12 -74.89 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.99 Total: 21.99 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.08 Total: -11.90 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.50 Total: -80.60 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.48 Total: -53.07 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -81.01 6.12 -74.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144492251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.405 kcal (2) G-P(sol) polarization free energy of solvation -81.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds