Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46877 * 2 1 4 4 C 1.53001 * 109.46839 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46989 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00451 * 265.57016 * 5 4 3 7 7 H 1.07997 * 120.00511 * 145.66998 * 6 5 4 8 8 C 1.38948 * 119.99564 * 325.67034 * 6 5 4 9 9 N 1.31411 * 120.00201 * 338.40933 * 8 6 5 10 10 Si 1.86807 * 120.00034 * 158.40471 * 8 6 5 11 11 H 1.48499 * 109.46870 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47089 * 119.99948 * 10 8 6 13 13 H 1.48495 * 109.47259 * 240.00700 * 10 8 6 14 14 C 1.34782 * 120.00093 * 85.57142 * 5 4 3 15 15 O 1.21296 * 119.99496 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00389 * 180.02562 * 14 5 4 17 17 C 1.52998 * 109.47073 * 179.97438 * 16 14 5 18 18 C 1.50707 * 109.46839 * 179.97438 * 17 16 14 19 19 C 1.38163 * 120.02803 * 264.99972 * 18 17 16 20 20 C 1.38244 * 120.05386 * 179.97438 * 19 18 17 21 21 C 1.38291 * 120.11310 * 0.02562 * 20 19 18 22 22 C 1.38117 * 120.05301 * 0.02657 * 21 20 19 23 23 C 1.38718 * 120.02644 * 84.72462 * 18 17 16 24 24 O 1.35898 * 120.05183 * 359.97438 * 23 18 17 25 25 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47296 * 299.99374 * 1 2 3 27 27 H 1.09000 * 109.46998 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.46870 * 240.00003 * 2 1 3 29 29 H 1.09000 * 109.46764 * 120.00583 * 2 1 3 30 30 H 1.09006 * 109.47078 * 60.00365 * 3 2 1 31 31 H 1.08994 * 109.47878 * 300.00324 * 3 2 1 32 32 H 1.09001 * 109.47027 * 60.00814 * 4 3 2 33 33 H 1.08993 * 109.47672 * 300.00447 * 4 3 2 34 34 H 0.97005 * 120.00045 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.47050 * 59.99481 * 16 14 5 36 36 H 1.08997 * 109.47289 * 299.99914 * 16 14 5 37 37 H 1.08996 * 109.47052 * 60.00199 * 17 16 14 38 38 H 1.09000 * 109.47410 * 299.99493 * 17 16 14 39 39 H 1.08004 * 119.97202 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.94397 * 180.02562 * 20 19 18 41 41 H 1.08000 * 119.96861 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.02446 * 179.97438 * 22 21 20 43 43 H 0.96706 * 114.00090 * 90.00599 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3738 3.4398 -1.1821 7 1 4.1969 4.4983 -1.3039 8 6 4.9211 2.7025 -2.2249 9 7 5.5239 1.5614 -1.9772 10 14 4.7998 3.3332 -3.9791 11 1 4.0790 4.6314 -3.9896 12 1 6.1647 3.5210 -4.5331 13 1 4.0597 2.3490 -4.8090 14 6 4.1974 3.4888 1.1653 15 8 3.9179 2.9438 2.2122 16 6 4.6992 4.9097 1.1659 17 6 4.7630 5.4273 2.6043 18 6 5.2654 6.8482 2.6049 19 6 6.6083 7.1067 2.8020 20 6 7.0698 8.4098 2.8022 21 6 6.1891 9.4578 2.6058 22 6 4.8456 9.2047 2.4094 23 6 4.3808 7.8973 2.4020 24 8 3.0605 7.6452 2.2019 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8907 34 1 5.9063 1.0468 -2.7052 35 1 4.0210 5.5348 0.5849 36 1 5.6943 4.9439 0.7226 37 1 5.4410 4.8024 3.1855 38 1 3.7677 5.3934 3.0472 39 1 7.2980 6.2900 2.9560 40 1 8.1199 8.6098 2.9560 41 1 6.5521 10.4749 2.6068 42 1 4.1581 10.0235 2.2565 43 1 2.5370 7.6216 3.0146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144512178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -75.973905 kcal Electronic energy + Delta-G solvation = -23227.874312 eV Core-core repulsion = 19851.423875 eV Total energy + Delta-G solvation = -3376.450436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81135 -38.49410 -36.49203 -35.41636 -33.88979 -33.39152 -31.44687 -30.06690 -29.26272 -28.02298 -24.91602 -24.39673 -22.49119 -22.32503 -20.78115 -20.25598 -18.95982 -18.20136 -16.69923 -16.13757 -15.77731 -15.66027 -14.99371 -14.74263 -14.53755 -14.15367 -14.13683 -13.77510 -13.31686 -13.06756 -12.71162 -12.34411 -12.19437 -12.13780 -11.89893 -11.77643 -11.43337 -11.35398 -11.19540 -11.14414 -10.84925 -10.54550 -10.44806 -10.36193 -10.23948 -10.23488 -10.05909 -9.66861 -9.06339 -8.76123 -8.50898 -8.23775 -7.47284 -6.34977 -4.01450 1.34084 1.42328 3.11559 3.23099 3.27594 3.72244 3.98342 4.13916 4.34565 4.77139 4.97148 4.98028 5.04251 5.18497 5.40306 5.52233 5.56688 5.60318 5.70079 5.82504 5.88026 5.94706 6.06561 6.12146 6.27671 6.29012 6.39843 6.42375 6.44477 6.49968 6.53141 6.56803 6.71019 6.78718 6.81202 6.87588 6.89546 6.94985 7.19126 7.41259 7.55400 7.79475 7.98088 8.42549 9.11342 9.58449 10.01674 10.66020 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.004520 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.669065 B = 6192.524949 C = 7289.610163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.113 3.887 5 N -0.439 5.439 6 C -0.335 4.335 7 H 0.090 0.910 8 C 0.042 3.958 9 N -0.859 5.859 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.469 3.531 15 O -0.611 6.611 16 C -0.108 4.108 17 C -0.058 4.058 18 C -0.094 4.094 19 C -0.102 4.102 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.147 4.147 23 C 0.106 3.894 24 O -0.492 6.492 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 9.150 5.948 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.156 5.156 6 C -0.463 4.463 7 H 0.108 0.892 8 C -0.163 4.163 9 N -0.496 5.496 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.205 1.205 14 C 0.258 3.742 15 O -0.498 6.498 16 C -0.148 4.148 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.121 4.121 20 C -0.147 4.147 21 C -0.135 4.135 22 C -0.165 4.165 23 C 0.061 3.939 24 O -0.301 6.301 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.485 8.688 5.723 10.509 hybrid contribution -0.117 0.351 -0.663 0.759 sum -1.602 9.039 5.060 10.482 Atomic orbital electron populations 1.21759 0.96691 1.00619 1.01461 1.21428 0.94922 0.97831 1.01544 1.21899 0.98058 0.95382 1.01266 1.21430 0.91015 0.85103 1.03494 1.43491 1.55272 1.11991 1.04873 1.19491 1.41414 0.95402 0.90017 0.89209 1.25310 0.94343 0.96340 1.00323 1.69943 1.31939 1.15027 1.32682 0.86140 0.78141 0.79277 0.82788 1.19132 1.20755 1.20481 1.20420 0.81277 0.88846 0.83655 1.90501 1.56717 1.70709 1.31857 1.21270 1.02909 0.94939 0.95693 1.20235 1.01910 0.89632 0.97763 1.20503 0.93817 0.96347 0.98832 1.21055 0.94661 0.96928 0.99410 1.21136 0.99632 0.92732 1.01183 1.20944 0.92923 0.99046 1.00619 1.21378 0.96518 0.96027 1.02625 1.18367 0.84184 0.91453 0.99881 1.84878 1.16440 1.93675 1.35152 0.93461 0.93095 0.93065 0.92299 0.92446 0.92928 0.92445 0.87538 0.93180 0.92152 0.90089 0.89896 0.90867 0.90828 0.85532 0.86056 0.86084 0.85812 0.75867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.13 -2.68 5.51 -26.73 -0.15 -2.83 16 4 C 0.11 2.77 4.92 -4.04 -0.02 2.75 16 5 N -0.44 -11.28 2.55 -114.81 -0.29 -11.57 16 6 C -0.34 -8.65 8.70 -14.93 -0.13 -8.78 16 7 H 0.09 2.26 6.98 -52.49 -0.37 1.89 16 8 C 0.04 1.08 4.94 -17.47 -0.09 0.99 16 9 N -0.86 -22.81 11.31 55.50 0.63 -22.19 16 10 Si 0.91 19.72 29.60 -169.99 -5.03 14.69 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 C 0.47 11.64 7.61 -10.99 -0.08 11.56 16 15 O -0.61 -16.22 15.64 5.54 0.09 -16.13 16 16 C -0.11 -2.26 4.34 -27.89 -0.12 -2.38 16 17 C -0.06 -1.03 4.35 -27.88 -0.12 -1.15 16 18 C -0.09 -1.45 5.15 -104.47 -0.54 -1.99 16 19 C -0.10 -1.41 9.68 -39.61 -0.38 -1.79 16 20 C -0.13 -1.52 10.04 -39.56 -0.40 -1.92 16 21 C -0.12 -1.33 10.04 -39.61 -0.40 -1.73 16 22 C -0.15 -1.83 9.99 -39.44 -0.39 -2.22 16 23 C 0.11 1.53 6.68 -39.21 -0.26 1.27 16 24 O -0.49 -6.91 12.65 -19.42 -0.25 -7.15 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.11 2.75 5.34 -51.93 -0.28 2.47 16 33 H 0.05 1.27 7.56 -51.93 -0.39 0.88 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.08 1.71 7.65 -51.92 -0.40 1.31 16 36 H 0.08 1.76 8.10 -51.93 -0.42 1.33 16 37 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 38 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 39 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.39 3.60 9.06 45.56 0.41 4.01 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -30.52 358.74 -8.36 -38.88 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.04 Total: 10.32 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.87 Total: -12.25 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.33 Total: -33.76 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.16 Total: -23.28 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.52 -8.36 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144512178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.090 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds