Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46877 * 2 1 4 4 C 1.53001 * 109.46839 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46989 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00451 * 265.57016 * 5 4 3 7 7 H 1.07997 * 120.00511 * 145.66998 * 6 5 4 8 8 C 1.38948 * 119.99564 * 325.67034 * 6 5 4 9 9 N 1.31411 * 120.00201 * 338.40933 * 8 6 5 10 10 Si 1.86807 * 120.00034 * 158.40471 * 8 6 5 11 11 H 1.48499 * 109.46870 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47089 * 119.99948 * 10 8 6 13 13 H 1.48495 * 109.47259 * 240.00700 * 10 8 6 14 14 C 1.34782 * 120.00093 * 85.57142 * 5 4 3 15 15 O 1.21296 * 119.99496 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00389 * 180.02562 * 14 5 4 17 17 C 1.52998 * 109.47073 * 179.97438 * 16 14 5 18 18 C 1.50707 * 109.46839 * 179.97438 * 17 16 14 19 19 C 1.38163 * 120.02803 * 264.99972 * 18 17 16 20 20 C 1.38244 * 120.05386 * 179.97438 * 19 18 17 21 21 C 1.38291 * 120.11310 * 0.02562 * 20 19 18 22 22 C 1.38117 * 120.05301 * 0.02657 * 21 20 19 23 23 C 1.38718 * 120.02644 * 84.72462 * 18 17 16 24 24 O 1.35898 * 120.05183 * 359.97438 * 23 18 17 25 25 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47296 * 299.99374 * 1 2 3 27 27 H 1.09000 * 109.46998 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.46870 * 240.00003 * 2 1 3 29 29 H 1.09000 * 109.46764 * 120.00583 * 2 1 3 30 30 H 1.09006 * 109.47078 * 60.00365 * 3 2 1 31 31 H 1.08994 * 109.47878 * 300.00324 * 3 2 1 32 32 H 1.09001 * 109.47027 * 60.00814 * 4 3 2 33 33 H 1.08993 * 109.47672 * 300.00447 * 4 3 2 34 34 H 0.97005 * 120.00045 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.47050 * 59.99481 * 16 14 5 36 36 H 1.08997 * 109.47289 * 299.99914 * 16 14 5 37 37 H 1.08996 * 109.47052 * 60.00199 * 17 16 14 38 38 H 1.09000 * 109.47410 * 299.99493 * 17 16 14 39 39 H 1.08004 * 119.97202 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.94397 * 180.02562 * 20 19 18 41 41 H 1.08000 * 119.96861 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.02446 * 179.97438 * 22 21 20 43 43 H 0.96706 * 114.00090 * 90.00599 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3738 3.4398 -1.1821 7 1 4.1969 4.4983 -1.3039 8 6 4.9211 2.7025 -2.2249 9 7 5.5239 1.5614 -1.9772 10 14 4.7998 3.3332 -3.9791 11 1 4.0790 4.6314 -3.9896 12 1 6.1647 3.5210 -4.5331 13 1 4.0597 2.3490 -4.8090 14 6 4.1974 3.4888 1.1653 15 8 3.9179 2.9438 2.2122 16 6 4.6992 4.9097 1.1659 17 6 4.7630 5.4273 2.6043 18 6 5.2654 6.8482 2.6049 19 6 6.6083 7.1067 2.8020 20 6 7.0698 8.4098 2.8022 21 6 6.1891 9.4578 2.6058 22 6 4.8456 9.2047 2.4094 23 6 4.3808 7.8973 2.4020 24 8 3.0605 7.6452 2.2019 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8907 34 1 5.9063 1.0468 -2.7052 35 1 4.0210 5.5348 0.5849 36 1 5.6943 4.9439 0.7226 37 1 5.4410 4.8024 3.1855 38 1 3.7677 5.3934 3.0472 39 1 7.2980 6.2900 2.9560 40 1 8.1199 8.6098 2.9560 41 1 6.5521 10.4749 2.6068 42 1 4.1581 10.0235 2.2565 43 1 2.5370 7.6216 3.0146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144512178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -93.127108 kcal Electronic energy + Delta-G solvation = -23228.618130 eV Core-core repulsion = 19851.423875 eV Total energy + Delta-G solvation = -3377.194255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97983 -40.32453 -37.51368 -37.25620 -35.58814 -34.77722 -33.42895 -31.23330 -30.55162 -29.50301 -26.87500 -25.85659 -23.87481 -23.47097 -22.08386 -21.79307 -20.92652 -19.24076 -18.59202 -17.85397 -17.00625 -16.87971 -16.49606 -16.25276 -16.16619 -15.90873 -15.74205 -14.79941 -14.77277 -14.60076 -13.96540 -13.88449 -13.76496 -13.59266 -13.35455 -13.11109 -13.01787 -12.85092 -12.75487 -12.56884 -12.40341 -12.13173 -12.05543 -11.96564 -11.85795 -11.78338 -11.44420 -11.26919 -11.00324 -10.37135 -9.74440 -9.49065 -9.44295 -8.31977 -6.05807 0.34939 0.41805 1.38426 1.45972 1.58553 2.02294 2.30348 2.72115 2.97708 3.09872 3.38064 3.85619 3.94506 4.06476 4.15034 4.19630 4.29740 4.30418 4.35035 4.46115 4.54859 4.58808 4.63449 4.81795 4.84839 4.87491 4.95801 4.98816 5.03049 5.08432 5.13148 5.17084 5.25403 5.35430 5.42068 5.45077 5.48735 5.57397 5.58450 5.67025 5.98702 6.00648 6.42367 6.88835 7.10746 7.58685 8.02454 8.70200 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.004520 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.669065 B = 6192.524949 C = 7289.610163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.114 3.886 5 N -0.450 5.450 6 C -0.354 4.354 7 H 0.093 0.907 8 C 0.004 3.996 9 N -0.890 5.890 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.453 3.547 15 O -0.635 6.635 16 C -0.093 4.093 17 C -0.044 4.044 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.108 4.108 22 C -0.151 4.151 23 C 0.093 3.907 24 O -0.509 6.509 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.029 0.971 34 H 0.273 0.727 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 10.990 5.117 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.153 4.153 4 C -0.010 4.010 5 N -0.168 5.168 6 C -0.481 4.481 7 H 0.110 0.890 8 C -0.199 4.199 9 N -0.527 5.527 10 Si 0.803 3.197 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.199 1.199 14 C 0.244 3.756 15 O -0.524 6.524 16 C -0.133 4.133 17 C -0.082 4.082 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.126 4.126 22 C -0.169 4.169 23 C 0.049 3.951 24 O -0.322 6.322 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.578 10.529 4.905 11.723 hybrid contribution -0.038 -0.212 -0.355 0.415 sum -1.616 10.317 4.550 11.391 Atomic orbital electron populations 1.21711 0.94049 1.02407 1.01775 1.21409 0.97199 0.95023 1.01715 1.21765 0.95467 0.97869 1.00219 1.21415 0.93254 0.84647 1.01663 1.43778 1.55289 1.12365 1.05327 1.19730 1.42222 0.95811 0.90381 0.88980 1.26144 0.93418 0.96385 1.03909 1.70032 1.32402 1.16172 1.34077 0.85096 0.78178 0.78921 0.77550 1.18463 1.20333 1.19913 1.21140 0.80982 0.90349 0.83162 1.90463 1.57781 1.71648 1.32558 1.21151 1.01912 0.92337 0.97903 1.20005 1.01401 0.91506 0.95246 1.20343 0.94991 0.94886 1.01868 1.21217 0.94044 0.98332 0.99641 1.21476 1.01276 0.91786 1.00062 1.21391 0.92240 1.00601 0.98342 1.21646 0.97616 0.95529 1.02106 1.18565 0.84112 0.92172 1.00247 1.84816 1.16727 1.93813 1.36808 0.90943 0.92969 0.92603 0.92013 0.92428 0.94335 0.92871 0.88781 0.95287 0.91716 0.90399 0.90488 0.91943 0.91620 0.85394 0.83222 0.82636 0.83800 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.12 -3.98 5.93 30.59 0.18 -3.80 16 3 C -0.11 -4.93 5.51 30.59 0.17 -4.76 16 4 C 0.11 5.78 4.92 86.38 0.42 6.21 16 5 N -0.45 -23.99 2.55 -635.54 -1.62 -25.62 16 6 C -0.35 -18.59 8.70 84.04 0.73 -17.86 16 7 H 0.09 4.70 6.98 -2.91 -0.02 4.68 16 8 C 0.00 0.23 4.94 84.93 0.42 0.65 16 9 N -0.89 -47.87 11.31 21.66 0.24 -47.62 16 10 Si 0.98 40.11 29.60 68.60 2.03 42.15 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 12 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 14 C 0.45 23.49 7.61 87.65 0.67 24.16 16 15 O -0.64 -35.30 15.64 -3.08 -0.05 -35.35 16 16 C -0.09 -4.05 4.34 29.85 0.13 -3.92 16 17 C -0.04 -1.62 4.35 29.85 0.13 -1.49 16 18 C -0.12 -3.72 5.15 -19.76 -0.10 -3.82 16 19 C -0.11 -3.06 9.68 22.25 0.22 -2.85 16 20 C -0.13 -2.69 10.04 22.28 0.22 -2.47 16 21 C -0.11 -2.08 10.04 22.25 0.22 -1.86 16 22 C -0.15 -3.39 9.99 22.36 0.22 -3.17 16 23 C 0.09 2.63 6.68 22.51 0.15 2.79 16 24 O -0.51 -14.21 12.65 -92.40 -1.17 -15.38 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 5.02 5.34 -2.39 -0.01 5.01 16 33 H 0.03 1.55 7.56 -2.39 -0.02 1.53 16 34 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 35 H 0.08 3.40 7.65 -2.38 -0.02 3.38 16 36 H 0.08 3.39 8.10 -2.39 -0.02 3.37 16 37 H 0.06 2.38 8.01 -2.39 -0.02 2.36 16 38 H 0.07 2.47 7.66 -2.39 -0.02 2.45 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.40 7.47 9.06 -74.05 -0.67 6.80 16 Total: -1.00 -66.86 358.74 4.26 -62.60 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.32 Total: 34.60 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.50 Total: -15.39 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.38 Total: -73.24 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.22 Total: -50.73 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.15 kcal Total: -66.86 4.26 -62.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144512178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.523 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds