Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46642 * 2 1 4 4 C 1.53001 * 109.46642 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46569 * 179.97438 * 4 3 2 6 6 C 1.36864 * 120.00095 * 279.53561 * 5 4 3 7 7 H 1.08002 * 120.00482 * 40.13435 * 6 5 4 8 8 C 1.39052 * 120.00215 * 220.13512 * 6 5 4 9 9 N 1.31367 * 119.99700 * 20.48160 * 8 6 5 10 10 Si 1.86797 * 120.00095 * 200.48793 * 8 6 5 11 11 H 1.48502 * 109.47169 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46900 * 119.99497 * 10 8 6 13 13 H 1.48498 * 109.47291 * 239.99560 * 10 8 6 14 14 C 1.34776 * 119.99537 * 99.53945 * 5 4 3 15 15 O 1.21593 * 119.99540 * 186.85572 * 14 5 4 16 16 C 1.47722 * 120.00396 * 6.85709 * 14 5 4 17 17 C 1.39646 * 120.15268 * 151.24110 * 16 14 5 18 18 C 1.37941 * 119.84528 * 180.02562 * 17 16 14 19 19 C 1.38376 * 120.15161 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.84536 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47140 * 90.00169 * 20 19 18 22 22 C 1.42896 * 114.00090 * 180.02562 * 21 20 19 23 23 C 1.38369 * 120.30449 * 0.26106 * 19 18 17 24 24 C 1.37936 * 120.15172 * 359.48461 * 23 19 18 25 25 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47306 * 299.99526 * 1 2 3 27 27 H 1.08993 * 109.47427 * 59.99746 * 1 2 3 28 28 H 1.08996 * 109.47214 * 240.00657 * 2 1 3 29 29 H 1.08993 * 109.47170 * 119.99768 * 2 1 3 30 30 H 1.09005 * 109.46882 * 60.00215 * 3 2 1 31 31 H 1.08993 * 109.47148 * 299.99781 * 3 2 1 32 32 H 1.08996 * 109.47214 * 60.00657 * 4 3 2 33 33 H 1.08993 * 109.47170 * 299.99768 * 4 3 2 34 34 H 0.97005 * 119.99513 * 184.93621 * 9 8 6 35 35 H 1.08002 * 120.07849 * 359.97438 * 17 16 14 36 36 H 1.08005 * 119.91938 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.47056 * 330.00109 * 20 19 18 38 38 H 1.09000 * 109.47340 * 210.00255 * 20 19 18 39 39 H 1.09000 * 109.46572 * 299.99998 * 22 21 20 40 40 H 1.08999 * 109.47481 * 59.99435 * 22 21 20 41 41 H 1.09000 * 109.47131 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.92258 * 179.74611 * 23 19 18 43 43 H 1.07999 * 120.07494 * 180.25468 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0581 2.8240 -0.0013 6 6 4.1006 3.5343 -1.1704 7 1 3.2945 3.4485 -1.8840 8 6 5.1816 4.3664 -1.4395 9 7 6.3213 4.1865 -0.8114 10 14 5.0132 5.7402 -2.6940 11 1 3.6386 5.7316 -3.2560 12 1 5.2699 7.0462 -2.0354 13 1 5.9969 5.5354 -3.7875 14 6 4.4656 3.3951 1.1495 15 8 4.7523 4.5765 1.1736 16 6 4.5638 2.5859 2.3815 17 6 5.4901 2.9235 3.3704 18 6 5.5768 2.1632 4.5181 19 6 4.7482 1.0685 4.6909 20 6 4.8491 0.2424 5.9472 21 8 3.9630 0.7696 6.9366 22 6 3.9820 0.0551 8.1739 23 6 3.8314 0.7256 3.7129 24 6 3.7304 1.4801 2.5627 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9290 -0.8909 33 1 3.9336 0.9287 0.8891 34 1 7.0525 4.8097 -0.9454 35 1 6.1378 3.7774 3.2366 36 1 6.2931 2.4230 5.2836 37 1 5.8723 0.2743 6.3218 38 1 4.5750 -0.7893 5.7267 39 1 3.6901 -0.9806 7.9998 40 1 4.9871 0.0834 8.5945 41 1 3.2828 0.5170 8.8710 42 1 3.1905 -0.1325 3.8524 43 1 3.0116 1.2137 1.8020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148439867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -25.951805 kcal Electronic energy + Delta-G solvation = -23606.482436 eV Core-core repulsion = 20232.201121 eV Total energy + Delta-G solvation = -3374.281315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73352 -38.22153 -36.98974 -35.71107 -33.47371 -32.30337 -31.19646 -30.49217 -28.28376 -27.46664 -25.77134 -24.53699 -23.11134 -22.25898 -21.38763 -20.64878 -19.57633 -17.05344 -16.49143 -16.34197 -15.91430 -15.88365 -15.20441 -14.79933 -14.48581 -14.05996 -13.93543 -13.63444 -13.58195 -13.14929 -12.94473 -12.48784 -12.30308 -12.20664 -12.09077 -11.76277 -11.54452 -11.40227 -11.07362 -10.94770 -10.85663 -10.76291 -10.65157 -10.56051 -10.32843 -10.16725 -9.90772 -9.77039 -8.77409 -8.42425 -8.30963 -8.03013 -7.15532 -6.14727 -3.84996 1.45347 1.83900 3.31501 3.41695 3.43236 3.62177 4.17629 4.28591 4.71912 4.87433 4.94365 4.98559 5.18947 5.21664 5.22404 5.26872 5.29566 5.31675 5.41369 5.44118 5.49371 5.49946 5.68416 5.76129 5.92514 6.00845 6.04120 6.10547 6.13325 6.17925 6.30986 6.37009 6.43929 6.46885 6.67349 6.76877 6.87669 6.91073 7.04802 7.05844 7.37978 7.60473 8.23388 9.02236 9.17981 9.62486 10.28315 10.92975 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.004898 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.048488 B = 5714.753817 C = 7290.983700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.439 5.439 6 C -0.341 4.341 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.828 5.828 10 Si 0.909 3.091 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.286 1.286 14 C 0.507 3.493 15 O -0.540 6.540 16 C -0.084 4.084 17 C -0.077 4.077 18 C -0.108 4.108 19 C -0.101 4.101 20 C 0.106 3.894 21 O -0.384 6.384 22 C 0.030 3.970 23 C -0.109 4.109 24 C -0.140 4.140 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 -11.927 10.510 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.179 4.179 4 C -0.056 4.056 5 N -0.159 5.159 6 C -0.468 4.468 7 H 0.100 0.900 8 C -0.141 4.141 9 N -0.462 5.462 10 Si 0.735 3.265 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.212 1.212 14 C 0.295 3.705 15 O -0.419 6.419 16 C -0.087 4.087 17 C -0.096 4.096 18 C -0.126 4.126 19 C -0.101 4.101 20 C 0.030 3.970 21 O -0.303 6.303 22 C -0.066 4.066 23 C -0.128 4.128 24 C -0.158 4.158 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.103 0.897 42 H 0.137 0.863 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.820 -11.122 10.419 15.984 hybrid contribution 0.280 0.371 -0.450 0.647 sum -4.540 -10.751 9.969 15.348 Atomic orbital electron populations 1.21764 0.96213 1.00978 1.01846 1.21516 0.95567 0.97270 1.01845 1.22073 0.97065 0.95948 1.02785 1.22519 0.92978 0.87237 1.02866 1.43140 1.57559 1.08992 1.06189 1.19047 1.04356 1.26524 0.96848 0.90037 1.25187 0.93405 0.98652 0.96824 1.69870 1.01827 1.33483 1.41012 0.86213 0.78116 0.82227 0.79908 1.19490 1.20573 1.21233 1.17773 0.83688 0.86977 0.82032 1.90586 1.51201 1.15792 1.84340 1.20623 0.96149 0.95373 0.96594 1.21240 0.97231 0.98892 0.92219 1.20888 0.99517 0.94789 0.97455 1.19531 0.98399 0.97472 0.94736 1.21342 0.93229 0.95665 0.86715 1.88016 1.63818 1.55550 1.22952 1.22735 1.01132 0.96353 0.86417 1.20895 0.97930 1.00283 0.93648 1.22516 1.00814 0.94684 0.97756 0.93208 0.92861 0.92800 0.91906 0.92235 0.91927 0.91051 0.91866 0.89143 0.92429 0.85224 0.86302 0.92687 0.92665 0.94209 0.94199 0.89736 0.86347 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.56 5.86 -26.73 -0.16 -1.72 16 3 C -0.14 -2.30 4.53 -26.73 -0.12 -2.42 16 4 C 0.07 1.33 4.84 -4.04 -0.02 1.31 16 5 N -0.44 -11.17 2.55 -115.93 -0.30 -11.47 16 6 C -0.34 -9.44 9.17 -15.00 -0.14 -9.58 16 7 H 0.08 2.16 7.91 -52.49 -0.42 1.74 16 8 C 0.07 1.99 4.31 -17.45 -0.08 1.92 16 9 N -0.83 -24.79 11.74 55.50 0.65 -24.13 16 10 Si 0.91 22.06 29.60 -169.99 -5.03 17.03 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.51 13.49 6.61 -12.39 -0.08 13.41 16 15 O -0.54 -16.55 14.55 5.28 0.08 -16.48 16 16 C -0.08 -1.83 5.62 -104.97 -0.59 -2.42 16 17 C -0.08 -1.55 9.60 -39.17 -0.38 -1.93 16 18 C -0.11 -1.80 9.68 -39.64 -0.38 -2.18 16 19 C -0.10 -1.54 5.52 -104.52 -0.58 -2.12 16 20 C 0.11 1.29 6.06 36.01 0.22 1.51 16 21 O -0.38 -5.04 10.69 -35.23 -0.38 -5.42 16 22 C 0.03 0.27 11.01 101.05 1.11 1.38 16 23 C -0.11 -1.69 9.68 -39.64 -0.38 -2.07 16 24 C -0.14 -2.51 7.53 -39.17 -0.29 -2.81 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 30 H 0.06 1.06 7.24 -51.93 -0.38 0.68 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.11 -51.93 -0.42 0.82 16 33 H 0.09 1.66 3.81 -55.08 -0.21 1.45 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.13 2.75 7.91 -52.49 -0.41 2.34 16 36 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.16 2.70 2.26 -52.49 -0.12 2.58 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -34.01 351.18 -7.75 -41.76 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.56 Total: 2.46 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.50 Total: -9.05 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.36 Total: -35.60 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.30 Total: -21.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.01 -7.75 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148439867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.804 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds