Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46642 * 2 1 4 4 C 1.53001 * 109.46642 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46569 * 179.97438 * 4 3 2 6 6 C 1.36864 * 120.00095 * 279.53561 * 5 4 3 7 7 H 1.08002 * 120.00482 * 40.13435 * 6 5 4 8 8 C 1.39052 * 120.00215 * 220.13512 * 6 5 4 9 9 N 1.31367 * 119.99700 * 20.48160 * 8 6 5 10 10 Si 1.86797 * 120.00095 * 200.48793 * 8 6 5 11 11 H 1.48502 * 109.47169 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46900 * 119.99497 * 10 8 6 13 13 H 1.48498 * 109.47291 * 239.99560 * 10 8 6 14 14 C 1.34776 * 119.99537 * 99.53945 * 5 4 3 15 15 O 1.21593 * 119.99540 * 186.85572 * 14 5 4 16 16 C 1.47722 * 120.00396 * 6.85709 * 14 5 4 17 17 C 1.39646 * 120.15268 * 151.24110 * 16 14 5 18 18 C 1.37941 * 119.84528 * 180.02562 * 17 16 14 19 19 C 1.38376 * 120.15161 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.84536 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47140 * 90.00169 * 20 19 18 22 22 C 1.42896 * 114.00090 * 180.02562 * 21 20 19 23 23 C 1.38369 * 120.30449 * 0.26106 * 19 18 17 24 24 C 1.37936 * 120.15172 * 359.48461 * 23 19 18 25 25 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47306 * 299.99526 * 1 2 3 27 27 H 1.08993 * 109.47427 * 59.99746 * 1 2 3 28 28 H 1.08996 * 109.47214 * 240.00657 * 2 1 3 29 29 H 1.08993 * 109.47170 * 119.99768 * 2 1 3 30 30 H 1.09005 * 109.46882 * 60.00215 * 3 2 1 31 31 H 1.08993 * 109.47148 * 299.99781 * 3 2 1 32 32 H 1.08996 * 109.47214 * 60.00657 * 4 3 2 33 33 H 1.08993 * 109.47170 * 299.99768 * 4 3 2 34 34 H 0.97005 * 119.99513 * 184.93621 * 9 8 6 35 35 H 1.08002 * 120.07849 * 359.97438 * 17 16 14 36 36 H 1.08005 * 119.91938 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.47056 * 330.00109 * 20 19 18 38 38 H 1.09000 * 109.47340 * 210.00255 * 20 19 18 39 39 H 1.09000 * 109.46572 * 299.99998 * 22 21 20 40 40 H 1.08999 * 109.47481 * 59.99435 * 22 21 20 41 41 H 1.09000 * 109.47131 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.92258 * 179.74611 * 23 19 18 43 43 H 1.07999 * 120.07494 * 180.25468 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0581 2.8240 -0.0013 6 6 4.1006 3.5343 -1.1704 7 1 3.2945 3.4485 -1.8840 8 6 5.1816 4.3664 -1.4395 9 7 6.3213 4.1865 -0.8114 10 14 5.0132 5.7402 -2.6940 11 1 3.6386 5.7316 -3.2560 12 1 5.2699 7.0462 -2.0354 13 1 5.9969 5.5354 -3.7875 14 6 4.4656 3.3951 1.1495 15 8 4.7523 4.5765 1.1736 16 6 4.5638 2.5859 2.3815 17 6 5.4901 2.9235 3.3704 18 6 5.5768 2.1632 4.5181 19 6 4.7482 1.0685 4.6909 20 6 4.8491 0.2424 5.9472 21 8 3.9630 0.7696 6.9366 22 6 3.9820 0.0551 8.1739 23 6 3.8314 0.7256 3.7129 24 6 3.7304 1.4801 2.5627 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9290 -0.8909 33 1 3.9336 0.9287 0.8891 34 1 7.0525 4.8097 -0.9454 35 1 6.1378 3.7774 3.2366 36 1 6.2931 2.4230 5.2836 37 1 5.8723 0.2743 6.3218 38 1 4.5750 -0.7893 5.7267 39 1 3.6901 -0.9806 7.9998 40 1 4.9871 0.0834 8.5945 41 1 3.2828 0.5170 8.8710 42 1 3.1905 -0.1325 3.8524 43 1 3.0116 1.2137 1.8020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148439867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -47.147279 kcal Electronic energy + Delta-G solvation = -23607.401541 eV Core-core repulsion = 20232.201121 eV Total energy + Delta-G solvation = -3375.200420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32680 -39.54568 -38.21340 -37.33979 -35.21333 -33.94517 -32.73468 -31.95102 -29.70071 -28.57004 -27.05844 -26.03968 -24.48874 -23.70121 -22.77432 -21.88217 -21.34360 -18.91772 -17.75950 -17.65961 -17.25804 -17.03906 -16.65837 -16.23880 -16.00730 -15.64404 -15.34128 -15.16842 -14.92405 -14.48059 -14.31587 -13.93078 -13.61938 -13.47519 -13.38572 -13.11673 -13.04550 -12.87935 -12.70128 -12.39158 -12.21319 -12.14663 -12.08595 -12.05823 -11.85725 -11.48873 -11.36319 -10.82431 -10.57968 -10.22508 -9.82461 -9.62966 -9.21252 -8.28090 -6.02828 0.02034 0.45289 1.34198 1.41986 1.50480 2.18841 2.34252 2.80940 3.09661 3.23777 3.31320 3.83917 3.90658 4.00501 4.02210 4.11168 4.23752 4.32364 4.40124 4.42277 4.46230 4.56073 4.61940 4.64873 4.71158 4.72267 4.87840 4.92637 4.93500 4.98618 5.05270 5.10698 5.18526 5.34966 5.39479 5.41477 5.45408 5.54439 5.56352 5.62372 5.99279 6.13913 6.28195 6.94227 7.15717 7.58863 8.26864 8.79596 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.004898 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.048488 B = 5714.753817 C = 7290.983700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.065 3.935 5 N -0.453 5.453 6 C -0.359 4.359 7 H 0.087 0.913 8 C 0.017 3.983 9 N -0.869 5.869 10 Si 0.970 3.030 11 H -0.254 1.254 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.494 3.506 15 O -0.600 6.600 16 C -0.122 4.122 17 C -0.099 4.099 18 C -0.104 4.104 19 C -0.089 4.089 20 C 0.107 3.893 21 O -0.414 6.414 22 C 0.025 3.975 23 C -0.099 4.099 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.163 0.837 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 -15.216 12.280 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.057 4.057 5 N -0.172 5.172 6 C -0.487 4.487 7 H 0.105 0.895 8 C -0.189 4.189 9 N -0.504 5.504 10 Si 0.795 3.205 11 H -0.178 1.178 12 H -0.222 1.222 13 H -0.197 1.197 14 C 0.285 3.715 15 O -0.484 6.484 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.089 4.089 20 C 0.031 3.969 21 O -0.334 6.334 22 C -0.071 4.071 23 C -0.116 4.116 24 C -0.154 4.154 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.180 0.820 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.392 -14.471 12.174 19.961 hybrid contribution 0.718 1.287 -0.818 1.686 sum -5.674 -13.184 11.356 18.302 Atomic orbital electron populations 1.21751 0.94854 1.02376 1.01664 1.21492 0.96656 0.94179 1.03166 1.21955 0.94339 0.98817 1.01635 1.22772 0.95111 0.84312 1.03513 1.43401 1.57391 1.11053 1.05391 1.19385 1.04262 1.27468 0.97550 0.89542 1.26100 0.93163 1.00810 0.98807 1.69976 1.02575 1.34352 1.43547 0.85266 0.79110 0.78325 0.77826 1.17784 1.22155 1.19659 1.18606 0.82271 0.86924 0.83697 1.90513 1.53637 1.18463 1.85744 1.20369 0.99329 0.97489 0.95363 1.21168 0.97507 0.99295 0.93838 1.21132 1.00179 0.94560 0.96303 1.20033 0.96444 0.96327 0.96119 1.21411 0.94394 0.95959 0.85118 1.87955 1.64093 1.56923 1.24423 1.22946 1.02269 0.97020 0.84891 1.21347 0.97755 1.00526 0.91994 1.22577 0.99985 0.93525 0.99278 0.90978 0.92758 0.93401 0.91311 0.90214 0.92508 0.92835 0.92252 0.87391 0.93009 0.88105 0.83756 0.90946 0.89842 0.92482 0.93001 0.88978 0.81994 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.91 71.98 0.71 -2.18 16 2 C -0.12 -2.63 5.86 30.60 0.18 -2.45 16 3 C -0.13 -4.15 4.53 30.60 0.14 -4.02 16 4 C 0.07 2.58 4.84 86.38 0.42 3.00 16 5 N -0.45 -24.04 2.55 -638.94 -1.63 -25.67 16 6 C -0.36 -20.72 9.17 84.10 0.77 -19.95 16 7 H 0.09 4.72 7.91 -2.91 -0.02 4.70 16 8 C 0.02 1.03 4.31 84.96 0.37 1.40 16 9 N -0.87 -55.00 11.74 21.68 0.25 -54.74 16 10 Si 0.97 47.12 29.60 68.60 2.03 49.15 16 11 H -0.25 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 14 C 0.49 27.85 6.61 86.75 0.57 28.42 16 15 O -0.60 -39.50 14.55 -4.01 -0.06 -39.55 16 16 C -0.12 -5.52 5.62 -20.09 -0.11 -5.63 16 17 C -0.10 -4.16 9.60 22.54 0.22 -3.94 16 18 C -0.10 -3.31 9.68 22.23 0.22 -3.10 16 19 C -0.09 -2.40 5.52 -19.80 -0.11 -2.51 16 20 C 0.11 2.07 6.06 71.24 0.43 2.50 16 21 O -0.41 -9.14 10.69 -148.98 -1.59 -10.73 16 22 C 0.02 0.33 11.01 113.37 1.25 1.58 16 23 C -0.10 -2.66 9.68 22.23 0.22 -2.44 16 24 C -0.14 -4.70 7.53 22.54 0.17 -4.53 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.50 7.83 -2.39 -0.02 1.48 16 30 H 0.06 1.89 7.24 -2.38 -0.02 1.87 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 33 H 0.11 3.89 3.81 -5.34 -0.02 3.87 16 34 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 35 H 0.10 4.70 7.91 -2.91 -0.02 4.68 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.07 1.17 8.08 -2.38 -0.02 1.15 16 38 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 39 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 43 H 0.17 5.44 2.26 -2.91 -0.01 5.44 16 Total: -1.00 -80.38 351.18 5.42 -74.96 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.98 Total: 20.45 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 5.43 Total: -13.87 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.38 Total: -80.42 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -1.65 Total: -50.28 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -80.38 5.42 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148439867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.817 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds