Wall clock time and date at job start Tue Mar 31 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47510 * 2 1 4 4 H 1.09005 * 109.46706 * 303.10641 * 3 2 1 5 5 C 1.53003 * 109.47264 * 183.10822 * 3 2 1 6 6 C 1.50694 * 109.46713 * 174.99988 * 5 3 2 7 7 C 1.38255 * 119.92707 * 269.97375 * 6 5 3 8 8 C 1.38238 * 120.14213 * 179.79827 * 7 6 5 9 9 C 1.38548 * 120.03174 * 0.43102 * 8 7 6 10 10 C 1.39265 * 119.82515 * 359.57247 * 9 8 7 11 11 C 1.38237 * 119.93088 * 90.00070 * 6 5 3 12 12 O 1.36498 * 108.64187 * 180.25087 * 10 9 8 13 13 C 1.43984 * 105.48420 * 342.71665 * 12 10 9 14 14 O 1.36497 * 131.53636 * 179.88028 * 9 8 7 15 15 N 1.46893 * 109.47156 * 63.10328 * 3 2 1 16 16 C 1.46901 * 110.99854 * 54.66740 * 15 3 2 17 17 C 1.52996 * 109.47312 * 174.30070 * 16 15 3 18 18 C 1.50700 * 109.47524 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99705 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00328 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99990 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47320 * 90.00285 * 22 20 18 24 24 H 1.48506 * 109.46919 * 210.00041 * 22 20 18 25 25 H 1.48492 * 109.47173 * 330.00175 * 22 20 18 26 26 H 1.09012 * 109.46726 * 294.54187 * 1 2 3 27 27 H 1.09003 * 109.47458 * 54.53609 * 1 2 3 28 28 H 1.08998 * 109.47190 * 174.54219 * 1 2 3 29 29 H 1.08999 * 109.47187 * 239.99882 * 2 1 3 30 30 H 1.09001 * 109.47545 * 120.00042 * 2 1 3 31 31 H 1.08998 * 109.46783 * 55.00219 * 5 3 2 32 32 H 1.08996 * 109.47058 * 294.99894 * 5 3 2 33 33 H 1.08006 * 119.93059 * 0.04684 * 7 6 5 34 34 H 1.08009 * 119.98545 * 180.32651 * 8 7 6 35 35 H 1.07998 * 119.98297 * 359.97438 * 11 6 5 36 36 H 1.09002 * 110.57187 * 268.55156 * 13 12 10 37 37 H 1.09002 * 110.57121 * 145.67638 * 13 12 10 38 38 H 1.00900 * 111.00129 * 290.71297 * 15 3 2 39 39 H 1.09008 * 109.47078 * 294.29508 * 16 15 3 40 40 H 1.08998 * 109.47561 * 54.29519 * 16 15 3 41 41 H 1.09007 * 109.47331 * 299.99786 * 17 16 15 42 42 H 1.08996 * 109.47676 * 59.99588 * 17 16 15 43 43 H 0.96996 * 119.99803 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6320 1.9721 -0.8609 5 6 3.5681 1.4431 -0.0782 6 6 4.0640 2.8607 -0.2020 7 6 4.2305 3.4266 -1.4524 8 6 4.6812 4.7280 -1.5710 9 6 4.9759 5.4659 -0.4360 10 6 4.8083 4.8959 0.8236 11 6 4.3521 3.5924 0.9350 12 8 5.1568 5.8167 1.7691 13 6 5.9261 6.8131 1.0701 14 8 5.4296 6.7438 -0.2797 15 7 1.6127 2.1130 1.2351 16 6 2.0381 1.3555 2.4196 17 6 1.7020 2.1517 3.6821 18 6 2.1378 1.3744 4.8973 19 1 2.6081 0.4091 4.7808 20 6 1.9373 1.8959 6.1578 21 7 1.3651 3.0716 6.2996 22 14 2.4783 0.9326 7.6640 23 1 3.8770 1.2950 8.0074 24 1 1.5876 1.2591 8.8066 25 1 2.4005 -0.5220 7.3756 26 1 -0.3633 0.4269 0.9349 27 1 -0.3634 0.5962 -0.8370 28 1 -0.3633 -1.0230 -0.0977 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8876 0.8692 -0.9480 32 1 3.9783 0.9922 0.8253 33 1 4.0041 2.8519 -2.3384 34 1 4.8053 5.1693 -2.5489 35 1 4.2212 3.1478 1.9105 36 1 6.9878 6.5682 1.1007 37 1 5.7475 7.8015 1.4936 38 1 0.6145 2.2607 1.2396 39 1 1.5178 0.3979 2.4448 40 1 3.1135 1.1836 2.3741 41 1 2.2222 3.1093 3.6571 42 1 0.6266 2.3236 3.7277 43 1 1.2238 3.4383 7.1864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170417628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:49 Heat of formation + Delta-G solvation = -51.583889 kcal Electronic energy + Delta-G solvation = -23523.525875 eV Core-core repulsion = 20148.133069 eV Total energy + Delta-G solvation = -3375.392806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94782 -38.78447 -37.02332 -36.07753 -33.47337 -31.77754 -31.63923 -30.19790 -28.91593 -27.45239 -25.59627 -24.39256 -23.56538 -22.73978 -21.50879 -21.11731 -19.14778 -17.73983 -17.29741 -17.19234 -16.29002 -16.03794 -15.66641 -14.90057 -14.38542 -14.32020 -14.25540 -13.88069 -13.76025 -13.54553 -13.19748 -12.78563 -12.71965 -12.59799 -12.39898 -12.08239 -11.89514 -11.49927 -11.27426 -11.13222 -11.03535 -10.87349 -10.70804 -10.58891 -10.47245 -10.29037 -9.82325 -9.34421 -9.08541 -8.54430 -8.31571 -7.84411 -7.66330 -5.96141 -3.98772 1.34072 1.48568 2.93716 3.33526 3.39802 3.42347 3.60877 3.78018 4.45959 4.69323 4.72555 4.73718 4.89670 4.99484 5.14383 5.18415 5.28406 5.33707 5.36873 5.38816 5.39904 5.64285 5.73261 5.79475 5.86446 5.91340 6.03142 6.09219 6.24164 6.26934 6.34054 6.35217 6.43305 6.50025 6.57251 6.60537 6.83375 7.06540 7.34671 7.56407 7.78355 7.86861 8.02447 8.14560 8.47508 9.09136 9.64994 11.15105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.005181 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.890958 B = 5403.533914 C = 7427.807129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.093 3.907 4 H 0.075 0.925 5 C -0.073 4.073 6 C -0.048 4.048 7 C -0.117 4.117 8 C -0.106 4.106 9 C 0.016 3.984 10 C 0.035 3.965 11 C -0.066 4.066 12 O -0.304 6.304 13 C 0.213 3.787 14 O -0.316 6.316 15 N -0.680 5.680 16 C 0.061 3.939 17 C 0.027 3.973 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.337 0.663 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.012 0.988 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 0.624 -17.077 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C -0.018 4.018 4 H 0.093 0.907 5 C -0.111 4.111 6 C -0.049 4.049 7 C -0.136 4.136 8 C -0.124 4.124 9 C -0.028 4.028 10 C -0.009 4.009 11 C -0.084 4.084 12 O -0.220 6.220 13 C 0.101 3.899 14 O -0.232 6.232 15 N -0.311 5.311 16 C -0.067 4.067 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.679 1.397 -16.824 18.155 hybrid contribution -0.275 -0.923 1.089 1.454 sum 6.404 0.475 -15.735 16.995 Atomic orbital electron populations 1.21750 0.95880 1.01376 1.01933 1.22282 0.96356 0.99026 1.02372 1.21557 0.93808 0.92100 0.94363 0.90722 1.20698 0.95466 0.92065 1.02852 1.19398 0.97505 0.96412 0.91539 1.20720 1.01353 0.94107 0.97370 1.19888 1.03489 0.93428 0.95618 1.19782 1.03934 0.84062 0.95060 1.19828 1.03123 0.92128 0.85835 1.20128 0.98485 0.89100 1.00706 1.87448 1.69050 1.33389 1.32091 1.25556 0.94911 0.94295 0.75184 1.87300 1.77477 1.26458 1.31992 1.60703 1.19554 1.49599 1.01212 1.22233 0.99091 0.95079 0.90345 1.19034 0.96790 0.95700 0.89500 1.21171 1.39480 1.04150 0.91150 0.92911 1.24989 0.95313 0.94957 0.99009 1.69980 1.43173 1.17098 1.22844 0.86640 0.78531 0.80291 0.82791 1.20680 1.21275 1.19967 0.92343 0.92957 0.93023 0.92250 0.91052 0.90882 0.90161 0.85135 0.85446 0.83951 0.90359 0.85541 0.84501 0.96228 0.92322 0.95792 0.97009 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.52 37.16 0.35 -1.44 16 2 C -0.16 -1.95 4.99 -26.73 -0.13 -2.08 16 3 C 0.09 1.21 2.54 -67.71 -0.17 1.04 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.07 -0.92 4.73 -27.88 -0.13 -1.05 16 6 C -0.05 -0.67 4.95 -104.62 -0.52 -1.19 16 7 C -0.12 -1.40 9.69 -39.58 -0.38 -1.79 16 8 C -0.11 -1.35 10.06 -39.47 -0.40 -1.74 16 9 C 0.02 0.24 7.15 -39.09 -0.28 -0.04 16 10 C 0.04 0.59 7.15 -39.08 -0.28 0.31 16 11 C -0.07 -1.10 9.31 -39.47 -0.37 -1.46 16 12 O -0.30 -5.18 11.40 -45.68 -0.52 -5.71 16 13 C 0.21 2.62 8.89 101.05 0.90 3.52 16 14 O -0.32 -4.57 11.40 -45.68 -0.52 -5.09 16 15 N -0.68 -11.33 5.64 -106.72 -0.60 -11.93 16 16 C 0.06 1.20 4.61 -3.83 -0.02 1.18 16 17 C 0.03 0.70 5.28 -27.88 -0.15 0.55 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.78 7.24 -51.92 -0.38 0.41 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.98 6.28 -51.93 -0.33 0.65 16 31 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.08 1.11 6.15 -51.93 -0.32 0.79 16 33 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.14 2.67 7.58 -52.49 -0.40 2.28 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.34 5.58 7.68 -39.29 -0.30 5.28 16 39 H 0.02 0.39 6.50 -51.92 -0.34 0.05 16 40 H 0.06 1.15 5.75 -51.93 -0.30 0.85 16 41 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.95 348.60 -9.21 -41.16 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.55 Total: 3.51 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.99 Total: -17.55 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.13 Total: -38.33 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.04 Total: -10.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.95 -9.21 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170417628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.428 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds