Wall clock time and date at job start Tue Mar 31 2020 07:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47510 * 2 1 4 4 H 1.09005 * 109.46706 * 303.10641 * 3 2 1 5 5 C 1.53003 * 109.47264 * 183.10822 * 3 2 1 6 6 C 1.50694 * 109.46713 * 174.99988 * 5 3 2 7 7 C 1.38255 * 119.92707 * 269.97375 * 6 5 3 8 8 C 1.38238 * 120.14213 * 179.79827 * 7 6 5 9 9 C 1.38548 * 120.03174 * 0.43102 * 8 7 6 10 10 C 1.39265 * 119.82515 * 359.57247 * 9 8 7 11 11 C 1.38237 * 119.93088 * 90.00070 * 6 5 3 12 12 O 1.36498 * 108.64187 * 180.25087 * 10 9 8 13 13 C 1.43984 * 105.48420 * 342.71665 * 12 10 9 14 14 O 1.36497 * 131.53636 * 179.88028 * 9 8 7 15 15 N 1.46893 * 109.47156 * 63.10328 * 3 2 1 16 16 C 1.46901 * 110.99854 * 54.66740 * 15 3 2 17 17 C 1.52996 * 109.47312 * 174.30070 * 16 15 3 18 18 C 1.50700 * 109.47524 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99705 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00328 * 179.97438 * 18 17 16 21 21 N 1.31524 * 119.99990 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47320 * 90.00285 * 22 20 18 24 24 H 1.48506 * 109.46919 * 210.00041 * 22 20 18 25 25 H 1.48492 * 109.47173 * 330.00175 * 22 20 18 26 26 H 1.09012 * 109.46726 * 294.54187 * 1 2 3 27 27 H 1.09003 * 109.47458 * 54.53609 * 1 2 3 28 28 H 1.08998 * 109.47190 * 174.54219 * 1 2 3 29 29 H 1.08999 * 109.47187 * 239.99882 * 2 1 3 30 30 H 1.09001 * 109.47545 * 120.00042 * 2 1 3 31 31 H 1.08998 * 109.46783 * 55.00219 * 5 3 2 32 32 H 1.08996 * 109.47058 * 294.99894 * 5 3 2 33 33 H 1.08006 * 119.93059 * 0.04684 * 7 6 5 34 34 H 1.08009 * 119.98545 * 180.32651 * 8 7 6 35 35 H 1.07998 * 119.98297 * 359.97438 * 11 6 5 36 36 H 1.09002 * 110.57187 * 268.55156 * 13 12 10 37 37 H 1.09002 * 110.57121 * 145.67638 * 13 12 10 38 38 H 1.00900 * 111.00129 * 290.71297 * 15 3 2 39 39 H 1.09008 * 109.47078 * 294.29508 * 16 15 3 40 40 H 1.08998 * 109.47561 * 54.29519 * 16 15 3 41 41 H 1.09007 * 109.47331 * 299.99786 * 17 16 15 42 42 H 1.08996 * 109.47676 * 59.99588 * 17 16 15 43 43 H 0.96996 * 119.99803 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6320 1.9721 -0.8609 5 6 3.5681 1.4431 -0.0782 6 6 4.0640 2.8607 -0.2020 7 6 4.2305 3.4266 -1.4524 8 6 4.6812 4.7280 -1.5710 9 6 4.9759 5.4659 -0.4360 10 6 4.8083 4.8959 0.8236 11 6 4.3521 3.5924 0.9350 12 8 5.1568 5.8167 1.7691 13 6 5.9261 6.8131 1.0701 14 8 5.4296 6.7438 -0.2797 15 7 1.6127 2.1130 1.2351 16 6 2.0381 1.3555 2.4196 17 6 1.7020 2.1517 3.6821 18 6 2.1378 1.3744 4.8973 19 1 2.6081 0.4091 4.7808 20 6 1.9373 1.8959 6.1578 21 7 1.3651 3.0716 6.2996 22 14 2.4783 0.9326 7.6640 23 1 3.8770 1.2950 8.0074 24 1 1.5876 1.2591 8.8066 25 1 2.4005 -0.5220 7.3756 26 1 -0.3633 0.4269 0.9349 27 1 -0.3634 0.5962 -0.8370 28 1 -0.3633 -1.0230 -0.0977 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8876 0.8692 -0.9480 32 1 3.9783 0.9922 0.8253 33 1 4.0041 2.8519 -2.3384 34 1 4.8053 5.1693 -2.5489 35 1 4.2212 3.1478 1.9105 36 1 6.9878 6.5682 1.1007 37 1 5.7475 7.8015 1.4936 38 1 0.6145 2.2607 1.2396 39 1 1.5178 0.3979 2.4448 40 1 3.1135 1.1836 2.3741 41 1 2.2222 3.1093 3.6571 42 1 0.6266 2.3236 3.7277 43 1 1.2238 3.4383 7.1864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170417628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:48 Heat of formation + Delta-G solvation = -71.989685 kcal Electronic energy + Delta-G solvation = -23524.410737 eV Core-core repulsion = 20148.133069 eV Total energy + Delta-G solvation = -3376.277668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.03997 -39.92158 -38.19938 -37.21373 -35.46799 -33.34037 -32.76785 -31.29182 -30.52412 -28.69436 -26.69907 -26.16474 -24.67400 -23.86423 -22.93368 -22.54654 -20.39177 -18.80122 -18.53087 -18.34188 -18.26711 -17.18348 -16.97221 -16.43702 -16.06039 -15.39976 -15.38212 -15.13808 -14.94173 -14.66714 -14.47644 -14.28200 -13.97746 -13.92165 -13.63244 -13.43043 -13.21086 -12.89801 -12.83007 -12.63927 -12.38008 -12.24362 -12.12938 -11.91313 -11.64080 -11.48888 -11.42008 -11.25907 -11.11931 -10.55681 -9.67463 -9.10482 -8.86343 -8.19749 -6.31148 0.24730 0.38069 1.37821 1.39759 1.50476 1.89519 2.39623 2.60726 2.69131 3.13716 3.48071 3.60571 3.82611 3.87177 4.04960 4.13389 4.19202 4.29720 4.34424 4.35166 4.42277 4.53434 4.60594 4.70756 4.72874 4.80218 4.92523 4.96737 5.07467 5.15289 5.16637 5.20944 5.26418 5.35712 5.40133 5.44847 5.50304 5.58049 5.72969 5.76756 5.84261 6.19563 6.24351 6.42193 6.67298 6.88137 7.38289 8.92462 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.005181 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.890958 B = 5403.533914 C = 7427.807129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.094 3.906 4 H 0.095 0.905 5 C -0.071 4.071 6 C -0.050 4.050 7 C -0.100 4.100 8 C -0.099 4.099 9 C 0.003 3.997 10 C 0.001 3.999 11 C -0.092 4.092 12 O -0.342 6.342 13 C 0.205 3.795 14 O -0.323 6.323 15 N -0.689 5.689 16 C 0.088 3.912 17 C 0.036 3.964 18 C -0.540 4.540 19 H 0.060 0.940 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.176 0.824 34 H 0.160 0.840 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.154 0.846 38 H 0.336 0.664 39 H 0.023 0.977 40 H 0.058 0.942 41 H -0.016 1.016 42 H -0.016 1.016 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -0.896 -19.755 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C -0.016 4.016 4 H 0.113 0.887 5 C -0.108 4.108 6 C -0.050 4.050 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.040 4.040 10 C -0.043 4.043 11 C -0.111 4.111 12 O -0.259 6.259 13 C 0.094 3.906 14 O -0.240 6.240 15 N -0.320 5.320 16 C -0.041 4.041 17 C -0.002 4.002 18 C -0.578 4.578 19 H 0.079 0.921 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.788 3.212 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.184 1.184 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.178 0.822 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.336 -0.134 -19.524 20.857 hybrid contribution -0.474 -0.390 1.859 1.958 sum 6.861 -0.525 -17.665 18.958 Atomic orbital electron populations 1.21743 0.95750 1.02115 1.01240 1.22215 0.96395 0.97952 1.02831 1.21699 0.94326 0.92858 0.92680 0.88719 1.20760 0.94751 0.91578 1.03744 1.19607 0.97125 0.96825 0.91459 1.21179 0.99010 0.93875 0.97734 1.20399 1.01744 0.93504 0.96124 1.20106 1.04481 0.84381 0.95080 1.20114 1.04703 0.92520 0.86918 1.20080 1.00839 0.89859 1.00308 1.87377 1.70143 1.34547 1.33826 1.26017 0.95615 0.94671 0.74290 1.87257 1.77691 1.26276 1.32818 1.60591 1.19546 1.50083 1.01754 1.21729 0.99000 0.94129 0.89258 1.18869 0.94247 0.94628 0.92418 1.21625 1.39317 1.04600 0.92271 0.92147 1.25981 0.95213 0.95950 1.02690 1.70134 1.44503 1.18999 1.23743 0.85469 0.78139 0.79285 0.78288 1.19982 1.20755 1.18400 0.94868 0.91384 0.92029 0.89181 0.93094 0.86835 0.92161 0.80672 0.82222 0.87784 0.87980 0.82885 0.84597 0.95931 0.92338 0.99744 0.99767 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.52 71.98 0.68 -2.57 16 2 C -0.15 -3.34 4.99 30.59 0.15 -3.19 16 3 C 0.09 2.27 2.54 44.92 0.11 2.38 16 4 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 5 C -0.07 -1.62 4.73 29.85 0.14 -1.48 16 6 C -0.05 -1.32 4.95 -19.86 -0.10 -1.41 16 7 C -0.10 -2.03 9.69 22.27 0.22 -1.81 16 8 C -0.10 -2.24 10.06 22.34 0.22 -2.02 16 9 C 0.00 0.10 7.15 22.59 0.16 0.26 16 10 C 0.00 0.04 7.15 22.59 0.16 0.21 16 11 C -0.09 -3.24 9.31 22.34 0.21 -3.03 16 12 O -0.34 -12.47 11.40 -76.03 -0.87 -13.33 16 13 C 0.20 5.11 8.89 113.37 1.01 6.12 16 14 O -0.32 -9.22 11.40 -76.02 -0.87 -10.09 16 15 N -0.69 -23.43 5.64 -491.56 -2.77 -26.21 16 16 C 0.09 3.62 4.61 86.30 0.40 4.02 16 17 C 0.04 1.97 5.28 29.85 0.16 2.13 16 18 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.93 -59.11 13.29 21.45 0.28 -58.82 16 22 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 26 H 0.03 0.87 7.24 -2.38 -0.02 0.85 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.32 6.28 -2.39 -0.01 1.31 16 31 H 0.11 1.70 8.08 -2.39 -0.02 1.68 16 32 H 0.06 1.64 6.15 -2.39 -0.01 1.62 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.10 4.36 7.58 -2.91 -0.02 4.34 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.34 11.43 7.68 -89.69 -0.69 10.74 16 39 H 0.02 0.92 6.50 -2.38 -0.02 0.90 16 40 H 0.06 2.42 5.75 -2.39 -0.01 2.40 16 41 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -74.49 348.60 2.35 -72.14 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.32 Total: 20.09 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 4.22 Total: -31.25 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.49 Total: -85.03 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.73 Total: -23.42 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.49 2.35 -72.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170417628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.153 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds