Wall clock time and date at job start Tue Mar 31 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.08999 * 109.47706 * 304.41638 * 3 2 1 5 5 C 1.53003 * 109.47104 * 184.41678 * 3 2 1 6 6 C 1.50701 * 109.47192 * 175.00008 * 5 3 2 7 7 C 1.38244 * 119.92878 * 269.97411 * 6 5 3 8 8 C 1.38243 * 120.14180 * 179.79313 * 7 6 5 9 9 C 1.38546 * 120.03041 * 0.47748 * 8 7 6 10 10 C 1.39265 * 119.82337 * 359.52928 * 9 8 7 11 11 C 1.38241 * 119.92375 * 90.00376 * 6 5 3 12 12 O 1.36502 * 108.64122 * 180.24838 * 10 9 8 13 13 C 1.43991 * 105.48237 * 342.71679 * 12 10 9 14 14 O 1.36497 * 131.53437 * 179.83109 * 9 8 7 15 15 N 1.46900 * 109.47373 * 64.41837 * 3 2 1 16 16 C 1.46895 * 111.00331 * 223.05071 * 15 3 2 17 17 H 1.09002 * 109.46783 * 323.45211 * 16 15 3 18 18 C 1.52998 * 109.47321 * 83.45538 * 16 15 3 19 19 C 1.50698 * 109.47237 * 203.45905 * 16 15 3 20 20 H 1.08002 * 120.00164 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00286 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00777 * 179.97438 * 21 19 16 23 23 Si 1.86802 * 119.99750 * 0.02562 * 21 19 16 24 24 H 1.48502 * 109.47136 * 89.99921 * 23 21 19 25 25 H 1.48503 * 109.47154 * 209.99941 * 23 21 19 26 26 H 1.48503 * 109.47226 * 329.99787 * 23 21 19 27 27 H 1.09006 * 109.46727 * 304.71811 * 1 2 3 28 28 H 1.08998 * 109.46932 * 64.71154 * 1 2 3 29 29 H 1.08993 * 109.47194 * 184.72099 * 1 2 3 30 30 H 1.09005 * 109.46961 * 240.00202 * 2 1 3 31 31 H 1.08995 * 109.47098 * 120.00200 * 2 1 3 32 32 H 1.09003 * 109.47236 * 55.00269 * 5 3 2 33 33 H 1.09000 * 109.46960 * 295.00301 * 5 3 2 34 34 H 1.08001 * 119.93274 * 0.04965 * 7 6 5 35 35 H 1.08003 * 119.98084 * 180.33513 * 8 7 6 36 36 H 1.07994 * 119.99273 * 359.97438 * 11 6 5 37 37 H 1.08999 * 110.57235 * 268.55126 * 13 12 10 38 38 H 1.08997 * 110.57027 * 145.67492 * 13 12 10 39 39 H 1.00903 * 111.00321 * 99.08813 * 15 3 2 40 40 H 1.09003 * 109.47034 * 65.62566 * 18 16 15 41 41 H 1.09006 * 109.47079 * 185.62351 * 18 16 15 42 42 H 1.09001 * 109.47023 * 305.62559 * 18 16 15 43 43 H 0.96995 * 120.00732 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 -0.8477 5 6 3.5660 1.4439 -0.1111 6 6 4.0593 2.8625 -0.2347 7 6 4.1989 3.4379 -1.4840 8 6 4.6470 4.7403 -1.6023 9 6 4.9669 5.4692 -0.4683 10 6 4.8264 4.8895 0.7902 11 6 4.3719 3.5854 0.9014 12 8 5.1962 5.8027 1.7349 13 6 5.9509 6.8041 1.0270 14 8 5.4249 6.7455 -0.3121 15 7 1.6394 2.1035 1.2492 16 6 1.1507 3.4646 0.9914 17 1 1.7338 3.9138 0.1874 18 6 -0.3227 3.4086 0.5830 19 6 1.2945 4.2951 2.2406 20 1 1.7073 3.8556 3.1367 21 6 0.8991 5.6159 2.2397 22 7 1.0242 6.3406 3.3300 23 14 0.1845 6.3759 0.6901 24 1 -1.2892 6.1930 0.6834 25 1 0.5036 7.8258 0.6573 26 1 0.7710 5.7128 -0.5023 27 1 -0.3633 0.5853 0.8448 28 1 -0.3633 0.4390 -0.9292 29 1 -0.3633 -1.0241 0.0846 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8667 0.8767 -0.9920 33 1 3.9956 0.9862 0.7800 34 1 3.9534 2.8701 -2.3692 35 1 4.7499 5.1890 -2.5793 36 1 4.2620 3.1335 1.8761 37 1 7.0128 6.5584 1.0325 38 1 5.7823 7.7892 1.4619 39 1 2.3987 2.1118 1.9136 40 1 -0.9193 3.0527 1.4230 41 1 -0.6582 4.4051 0.2955 42 1 -0.4404 2.7282 -0.2604 43 1 0.7464 7.2699 3.3293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170422014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:01 Heat of formation + Delta-G solvation = -36.993786 kcal Electronic energy + Delta-G solvation = -24881.677289 eV Core-core repulsion = 21506.917158 eV Total energy + Delta-G solvation = -3374.760132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77446 -38.70201 -36.54276 -35.88086 -33.76152 -31.62599 -31.44336 -30.06002 -28.90990 -26.99263 -25.37304 -24.92005 -23.54954 -22.61174 -21.31904 -20.32889 -19.73051 -17.61092 -17.17912 -17.01042 -16.53271 -15.85552 -15.36622 -14.78127 -14.23767 -14.09634 -14.08708 -13.54067 -13.45182 -13.21118 -12.98437 -12.76340 -12.58854 -12.44059 -12.30557 -12.08652 -11.98280 -11.45115 -11.24924 -10.94530 -10.87238 -10.74108 -10.59550 -10.37919 -10.30899 -10.17902 -9.95426 -9.40779 -8.92535 -8.51426 -8.41451 -7.72353 -7.28856 -6.00661 -3.97925 1.48906 1.62254 3.10742 3.31959 3.43065 3.43961 3.79899 3.89365 4.47099 4.86429 4.86540 4.97140 4.99437 5.16759 5.27759 5.33955 5.38331 5.46907 5.50483 5.62260 5.68487 5.80476 5.86667 5.95193 6.01323 6.23481 6.29659 6.34862 6.40134 6.46729 6.49561 6.55385 6.61240 6.65349 6.71044 6.76908 6.86282 6.90747 6.96589 7.49627 7.50668 7.68317 8.04064 8.43159 8.70698 9.04396 9.63752 11.12555 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.008621 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.994697 B = 3247.006526 C = 4649.166146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C 0.086 3.914 4 H 0.067 0.933 5 C -0.099 4.099 6 C -0.070 4.070 7 C -0.116 4.116 8 C -0.104 4.104 9 C 0.017 3.983 10 C 0.057 3.943 11 C -0.072 4.072 12 O -0.295 6.295 13 C 0.212 3.788 14 O -0.314 6.314 15 N -0.668 5.668 16 C 0.185 3.815 17 H 0.004 0.996 18 C -0.140 4.140 19 C -0.508 4.508 20 H 0.076 0.924 21 C 0.078 3.922 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.280 1.280 25 H -0.301 1.301 26 H -0.269 1.269 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.337 0.663 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.028 0.972 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -7.165 -9.170 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.025 4.025 4 H 0.085 0.915 5 C -0.137 4.137 6 C -0.070 4.070 7 C -0.135 4.135 8 C -0.123 4.123 9 C -0.027 4.027 10 C 0.012 3.988 11 C -0.091 4.091 12 O -0.210 6.210 13 C 0.100 3.900 14 O -0.231 6.231 15 N -0.300 5.300 16 C 0.076 3.924 17 H 0.022 0.978 18 C -0.197 4.197 19 C -0.546 4.546 20 H 0.094 0.906 21 C -0.124 4.124 22 N -0.535 5.535 23 Si 0.711 3.289 24 H -0.207 1.207 25 H -0.228 1.228 26 H -0.194 1.194 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.012 -7.041 -8.972 13.938 hybrid contribution 0.380 1.487 -0.868 1.763 sum 8.392 -5.554 -9.840 14.075 Atomic orbital electron populations 1.21701 0.95762 1.00304 1.02454 1.21481 0.96495 0.95881 1.00497 1.21704 0.90656 0.95432 0.94697 0.91511 1.21260 0.97861 0.91778 1.02850 1.19511 0.98849 0.96639 0.92032 1.20640 1.01383 0.94139 0.97302 1.19891 1.03157 0.93529 0.95708 1.19784 1.03741 0.84019 0.95140 1.19678 1.01527 0.91811 0.85768 1.19885 0.99852 0.89810 0.99539 1.87483 1.68996 1.33339 1.31204 1.25551 0.94507 0.94473 0.75454 1.87299 1.76364 1.26496 1.32923 1.60582 1.39291 1.20956 1.09152 1.19541 0.91077 0.85128 0.96611 0.97836 1.22148 1.00103 0.98063 0.99425 1.20985 1.42018 0.94666 0.96944 0.90621 1.24812 0.95231 0.97007 0.95357 1.69878 1.48133 1.08254 1.27240 0.86964 0.79342 0.77490 0.85072 1.20740 1.22844 1.19379 0.90575 0.93951 0.94226 0.93186 0.92155 0.90841 0.90646 0.85198 0.85456 0.84798 0.90522 0.85633 0.84417 0.92540 0.95043 0.95276 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.31 37.16 0.35 -1.67 16 2 C -0.11 -1.39 5.61 -26.73 -0.15 -1.54 16 3 C 0.09 1.33 1.90 -67.71 -0.13 1.20 16 4 H 0.07 1.13 7.10 -51.93 -0.37 0.76 16 5 C -0.10 -1.32 4.69 -27.88 -0.13 -1.45 16 6 C -0.07 -1.11 3.79 -104.62 -0.40 -1.50 16 7 C -0.12 -1.74 9.69 -39.58 -0.38 -2.12 16 8 C -0.10 -1.67 10.06 -39.47 -0.40 -2.07 16 9 C 0.02 0.32 7.15 -39.09 -0.28 0.04 16 10 C 0.06 1.12 7.15 -39.08 -0.28 0.84 16 11 C -0.07 -1.32 8.04 -39.47 -0.32 -1.63 16 12 O -0.29 -5.90 11.40 -45.70 -0.52 -6.42 16 13 C 0.21 3.23 8.89 101.05 0.90 4.13 16 14 O -0.31 -5.62 11.40 -45.68 -0.52 -6.14 16 15 N -0.67 -12.73 5.21 -100.96 -0.53 -13.26 16 16 C 0.19 4.27 1.11 -68.87 -0.08 4.19 16 17 H 0.00 0.10 5.48 -51.93 -0.28 -0.18 16 18 C -0.14 -3.14 8.53 37.16 0.32 -2.82 16 19 C -0.51 -13.97 9.17 -34.44 -0.32 -14.28 16 20 H 0.08 2.26 7.89 -52.49 -0.41 1.84 16 21 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 22 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 23 Si 0.88 23.12 24.31 -169.99 -4.13 18.98 16 24 H -0.28 -7.17 6.92 56.52 0.39 -6.78 16 25 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 26 H -0.27 -6.91 6.53 56.52 0.37 -6.54 16 27 H 0.08 1.24 7.32 -51.93 -0.38 0.86 16 28 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 34 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.13 2.43 7.28 -52.49 -0.38 2.05 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.13 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.34 6.48 6.31 -39.29 -0.25 6.23 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.03 0.74 3.44 -51.93 -0.18 0.56 16 42 H 0.03 0.57 6.99 -51.93 -0.36 0.20 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -32.23 336.65 -7.68 -39.91 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.43 Total: 5.34 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.39 Total: -16.52 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.25 Total: -40.22 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.04 Total: -12.56 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.13 Total: 18.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.23 -7.68 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170422014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.912 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds