Wall clock time and date at job start Tue Mar 31 2020 07:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.08999 * 109.47706 * 304.41638 * 3 2 1 5 5 C 1.53003 * 109.47104 * 184.41678 * 3 2 1 6 6 C 1.50701 * 109.47192 * 175.00008 * 5 3 2 7 7 C 1.38244 * 119.92878 * 269.97411 * 6 5 3 8 8 C 1.38243 * 120.14180 * 179.79313 * 7 6 5 9 9 C 1.38546 * 120.03041 * 0.47748 * 8 7 6 10 10 C 1.39265 * 119.82337 * 359.52928 * 9 8 7 11 11 C 1.38241 * 119.92375 * 90.00376 * 6 5 3 12 12 O 1.36502 * 108.64122 * 180.24838 * 10 9 8 13 13 C 1.43991 * 105.48237 * 342.71679 * 12 10 9 14 14 O 1.36497 * 131.53437 * 179.83109 * 9 8 7 15 15 N 1.46900 * 109.47373 * 64.41837 * 3 2 1 16 16 C 1.46895 * 111.00331 * 223.05071 * 15 3 2 17 17 H 1.09002 * 109.46783 * 323.45211 * 16 15 3 18 18 C 1.52998 * 109.47321 * 83.45538 * 16 15 3 19 19 C 1.50698 * 109.47237 * 203.45905 * 16 15 3 20 20 H 1.08002 * 120.00164 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00286 * 179.97438 * 19 16 15 22 22 N 1.31512 * 120.00777 * 179.97438 * 21 19 16 23 23 Si 1.86802 * 119.99750 * 0.02562 * 21 19 16 24 24 H 1.48502 * 109.47136 * 89.99921 * 23 21 19 25 25 H 1.48503 * 109.47154 * 209.99941 * 23 21 19 26 26 H 1.48503 * 109.47226 * 329.99787 * 23 21 19 27 27 H 1.09006 * 109.46727 * 304.71811 * 1 2 3 28 28 H 1.08998 * 109.46932 * 64.71154 * 1 2 3 29 29 H 1.08993 * 109.47194 * 184.72099 * 1 2 3 30 30 H 1.09005 * 109.46961 * 240.00202 * 2 1 3 31 31 H 1.08995 * 109.47098 * 120.00200 * 2 1 3 32 32 H 1.09003 * 109.47236 * 55.00269 * 5 3 2 33 33 H 1.09000 * 109.46960 * 295.00301 * 5 3 2 34 34 H 1.08001 * 119.93274 * 0.04965 * 7 6 5 35 35 H 1.08003 * 119.98084 * 180.33513 * 8 7 6 36 36 H 1.07994 * 119.99273 * 359.97438 * 11 6 5 37 37 H 1.08999 * 110.57235 * 268.55126 * 13 12 10 38 38 H 1.08997 * 110.57027 * 145.67492 * 13 12 10 39 39 H 1.00903 * 111.00321 * 99.08813 * 15 3 2 40 40 H 1.09003 * 109.47034 * 65.62566 * 18 16 15 41 41 H 1.09006 * 109.47079 * 185.62351 * 18 16 15 42 42 H 1.09001 * 109.47023 * 305.62559 * 18 16 15 43 43 H 0.96995 * 120.00732 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6135 1.9787 -0.8477 5 6 3.5660 1.4439 -0.1111 6 6 4.0593 2.8625 -0.2347 7 6 4.1989 3.4379 -1.4840 8 6 4.6470 4.7403 -1.6023 9 6 4.9669 5.4692 -0.4683 10 6 4.8264 4.8895 0.7902 11 6 4.3719 3.5854 0.9014 12 8 5.1962 5.8027 1.7349 13 6 5.9509 6.8041 1.0270 14 8 5.4249 6.7455 -0.3121 15 7 1.6394 2.1035 1.2492 16 6 1.1507 3.4646 0.9914 17 1 1.7338 3.9138 0.1874 18 6 -0.3227 3.4086 0.5830 19 6 1.2945 4.2951 2.2406 20 1 1.7073 3.8556 3.1367 21 6 0.8991 5.6159 2.2397 22 7 1.0242 6.3406 3.3300 23 14 0.1845 6.3759 0.6901 24 1 -1.2892 6.1930 0.6834 25 1 0.5036 7.8258 0.6573 26 1 0.7710 5.7128 -0.5023 27 1 -0.3633 0.5853 0.8448 28 1 -0.3633 0.4390 -0.9292 29 1 -0.3633 -1.0241 0.0846 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8667 0.8767 -0.9920 33 1 3.9956 0.9862 0.7800 34 1 3.9534 2.8701 -2.3692 35 1 4.7499 5.1890 -2.5793 36 1 4.2620 3.1335 1.8761 37 1 7.0128 6.5584 1.0325 38 1 5.7823 7.7892 1.4619 39 1 2.3987 2.1118 1.9136 40 1 -0.9193 3.0527 1.4230 41 1 -0.6582 4.4051 0.2955 42 1 -0.4404 2.7282 -0.2604 43 1 0.7464 7.2699 3.3293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170422014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:00 Heat of formation + Delta-G solvation = -58.829776 kcal Electronic energy + Delta-G solvation = -24882.624169 eV Core-core repulsion = 21506.917158 eV Total energy + Delta-G solvation = -3375.707011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07528 -40.00306 -37.93637 -37.23895 -35.52821 -33.45420 -32.73979 -31.33560 -30.40951 -28.32547 -27.05737 -26.58580 -24.74661 -23.91518 -22.53033 -22.02089 -21.16248 -18.90837 -18.69983 -18.39468 -18.28682 -17.23778 -17.06461 -16.15949 -15.75478 -15.41873 -15.40420 -15.00091 -14.82650 -14.68106 -14.65039 -14.24227 -14.03573 -13.95330 -13.65456 -13.57243 -13.22777 -12.98963 -12.79271 -12.56624 -12.38636 -12.20355 -12.01703 -11.87151 -11.58063 -11.48218 -11.40048 -11.34926 -10.92293 -10.73447 -9.73162 -9.12714 -8.73580 -8.27620 -6.26030 0.19780 0.32826 1.21318 1.27649 1.34434 1.85643 2.28677 2.57484 2.62496 3.10900 3.56771 3.61903 3.76358 3.82491 4.02289 4.09535 4.19153 4.31780 4.32807 4.47066 4.54585 4.56558 4.67105 4.71442 4.75314 4.85872 4.94758 4.96743 5.06989 5.10061 5.16516 5.20345 5.27277 5.31233 5.38067 5.50322 5.52672 5.60657 5.65815 5.73124 5.76078 6.11214 6.20241 6.61812 6.78093 6.97046 7.39215 8.89243 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.008621 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.994697 B = 3247.006526 C = 4649.166146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C 0.085 3.915 4 H 0.060 0.940 5 C -0.092 4.092 6 C -0.071 4.071 7 C -0.108 4.108 8 C -0.107 4.107 9 C -0.004 4.004 10 C 0.020 3.980 11 C -0.092 4.092 12 O -0.334 6.334 13 C 0.204 3.796 14 O -0.328 6.328 15 N -0.670 5.670 16 C 0.199 3.801 17 H -0.006 1.006 18 C -0.136 4.136 19 C -0.494 4.494 20 H 0.038 0.962 21 C 0.023 3.977 22 N -0.944 5.944 23 Si 0.931 3.069 24 H -0.267 1.267 25 H -0.310 1.310 26 H -0.256 1.256 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.332 0.668 40 H 0.047 0.953 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -9.349 -12.535 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.025 4.025 4 H 0.078 0.922 5 C -0.131 4.131 6 C -0.071 4.071 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.048 4.048 10 C -0.024 4.024 11 C -0.111 4.111 12 O -0.251 6.251 13 C 0.093 3.907 14 O -0.245 6.245 15 N -0.301 5.301 16 C 0.089 3.911 17 H 0.011 0.989 18 C -0.194 4.194 19 C -0.532 4.532 20 H 0.056 0.944 21 C -0.174 4.174 22 N -0.585 5.585 23 Si 0.761 3.239 24 H -0.193 1.193 25 H -0.239 1.239 26 H -0.181 1.181 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.189 0.811 35 H 0.173 0.827 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.024 -9.260 -12.357 17.402 hybrid contribution 0.442 2.076 0.225 2.135 sum 8.467 -7.183 -12.132 16.446 Atomic orbital electron populations 1.21685 0.96415 1.00937 1.01251 1.21453 0.95832 0.94183 1.02199 1.21826 0.92171 0.96311 0.92224 0.92182 1.21280 0.96066 0.90609 1.05108 1.19863 0.97950 0.97669 0.91621 1.21156 0.99427 0.93804 0.98220 1.20399 1.02013 0.93952 0.96133 1.20163 1.04753 0.84351 0.95537 1.20078 1.03274 0.92587 0.86475 1.20054 1.01000 0.89954 1.00052 1.87403 1.70148 1.34564 1.32966 1.26015 0.95776 0.94523 0.74366 1.87241 1.76767 1.26593 1.33942 1.60553 1.39785 1.18464 1.11337 1.19242 0.91759 0.86494 0.93613 0.98861 1.22059 0.98934 0.98070 1.00303 1.21260 1.39617 0.94882 0.97465 0.94356 1.25517 0.96271 0.97825 0.97808 1.70020 1.50539 1.08542 1.29438 0.86125 0.79397 0.76087 0.82310 1.19328 1.23855 1.18050 0.93521 0.93652 0.92473 0.89890 0.91973 0.86918 0.89990 0.81072 0.82715 0.86365 0.86973 0.83959 0.84892 0.93432 0.96193 0.92143 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.31 71.98 0.67 -2.89 16 2 C -0.10 -2.18 5.61 30.60 0.17 -2.01 16 3 C 0.08 2.33 1.90 44.92 0.09 2.41 16 4 H 0.06 1.77 7.10 -2.39 -0.02 1.75 16 5 C -0.09 -2.12 4.69 29.85 0.14 -1.98 16 6 C -0.07 -2.08 3.79 -19.86 -0.08 -2.16 16 7 C -0.11 -2.84 9.69 22.27 0.22 -2.62 16 8 C -0.11 -3.17 10.06 22.34 0.22 -2.94 16 9 C 0.00 -0.15 7.15 22.59 0.16 0.01 16 10 C 0.02 0.81 7.15 22.59 0.16 0.97 16 11 C -0.09 -3.40 8.04 22.34 0.18 -3.22 16 12 O -0.33 -14.10 11.40 -76.08 -0.87 -14.97 16 13 C 0.20 6.34 8.89 113.37 1.01 7.35 16 14 O -0.33 -11.79 11.40 -76.02 -0.87 -12.66 16 15 N -0.67 -24.83 5.21 -473.32 -2.47 -27.29 16 16 C 0.20 9.03 1.11 44.17 0.05 9.08 16 17 H -0.01 -0.29 5.48 -2.39 -0.01 -0.30 16 18 C -0.14 -5.88 8.53 71.98 0.61 -5.27 16 19 C -0.49 -27.95 9.17 25.60 0.23 -27.71 16 20 H 0.04 2.41 7.89 -2.91 -0.02 2.39 16 21 C 0.02 1.38 5.45 84.65 0.46 1.85 16 22 N -0.94 -60.84 13.96 21.45 0.30 -60.54 16 23 Si 0.93 48.04 24.31 68.60 1.67 49.71 16 24 H -0.27 -13.09 6.92 99.48 0.69 -12.40 16 25 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 26 H -0.26 -12.54 6.53 99.48 0.65 -11.89 16 27 H 0.05 1.42 7.32 -2.38 -0.02 1.40 16 28 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.08 1.82 7.98 -2.39 -0.02 1.80 16 34 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.12 4.57 7.28 -2.91 -0.02 4.55 16 37 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.33 12.87 6.31 -89.69 -0.57 12.30 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.02 0.90 3.44 -2.38 -0.01 0.89 16 42 H 0.06 2.21 6.99 -2.39 -0.02 2.19 16 43 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -73.41 336.65 2.44 -70.97 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.37 Total: 23.91 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.30 Total: -29.14 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.17 Total: -87.83 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.73 Total: -27.63 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -73.41 2.44 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170422014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.141 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds