Wall clock time and date at job start Tue Mar 31 2020 07:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09008 * 109.47157 * 55.83481 * 3 2 1 5 5 C 1.53000 * 109.47107 * 175.83407 * 3 2 1 6 6 C 1.50701 * 109.46811 * 184.99698 * 5 3 2 7 7 C 1.38253 * 119.93147 * 269.72690 * 6 5 3 8 8 C 1.38237 * 120.14216 * 179.69638 * 7 6 5 9 9 C 1.38546 * 120.02695 * 0.63457 * 8 7 6 10 10 C 1.39270 * 119.82902 * 359.64399 * 9 8 7 11 11 C 1.38240 * 119.92599 * 90.00777 * 6 5 3 12 12 O 1.36501 * 108.63476 * 180.02562 * 10 9 8 13 13 C 1.43994 * 105.48759 * 342.71487 * 12 10 9 14 14 O 1.36504 * 131.52678 * 179.64802 * 9 8 7 15 15 N 1.46904 * 109.47060 * 295.83615 * 3 2 1 16 16 C 1.46895 * 110.99709 * 318.16857 * 15 3 2 17 17 C 1.46897 * 110.99914 * 82.12071 * 15 3 2 18 18 C 1.50701 * 109.47043 * 159.87990 * 17 15 3 19 19 H 1.07994 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00155 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99865 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47140 * 89.99845 * 22 20 18 24 24 H 1.48497 * 109.47201 * 209.99779 * 22 20 18 25 25 H 1.48504 * 109.47193 * 329.99905 * 22 20 18 26 26 H 1.09001 * 109.47143 * 197.77596 * 1 2 3 27 27 H 1.09003 * 109.47246 * 317.77122 * 1 2 3 28 28 H 1.08999 * 109.47609 * 77.77715 * 1 2 3 29 29 H 1.09002 * 109.46927 * 239.99514 * 2 1 3 30 30 H 1.09000 * 109.46987 * 120.00190 * 2 1 3 31 31 H 1.08992 * 109.47508 * 305.00113 * 5 3 2 32 32 H 1.09001 * 109.46651 * 65.00116 * 5 3 2 33 33 H 1.08005 * 119.92595 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.98481 * 180.27926 * 8 7 6 35 35 H 1.07997 * 119.98458 * 359.97438 * 11 6 5 36 36 H 1.08995 * 110.57231 * 268.56365 * 13 12 10 37 37 H 1.08999 * 110.56730 * 145.68725 * 13 12 10 38 38 H 1.09000 * 109.46960 * 183.95341 * 16 15 3 39 39 H 1.08999 * 109.47551 * 63.95456 * 16 15 3 40 40 H 1.08999 * 109.47341 * 303.94913 * 16 15 3 41 41 H 1.09006 * 109.47265 * 279.87778 * 17 15 3 42 42 H 1.08994 * 109.47351 * 39.87873 * 17 15 3 43 43 H 0.97002 * 119.99899 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9775 0.8504 5 6 3.5664 1.4437 0.1048 6 6 4.0602 2.8622 0.2283 7 6 4.3735 3.5850 -0.9078 8 6 4.8208 4.8885 -0.7998 9 6 4.9688 5.4695 0.4492 10 6 4.6588 4.7394 1.5940 11 6 4.2045 3.4358 1.4778 12 8 4.8855 5.5250 2.6870 13 6 5.7234 6.5994 2.2212 14 8 5.3903 6.7123 0.8250 15 7 1.6342 2.1053 -1.2466 16 6 1.8038 1.2096 -2.3984 17 6 0.2511 2.5924 -1.1577 18 6 0.0272 3.6610 -2.1965 19 1 0.8316 3.9491 -2.8569 20 6 -1.2051 4.2701 -2.3044 21 7 -1.4003 5.2029 -3.2106 22 14 -2.5967 3.7712 -1.1625 23 1 -2.5627 4.6165 0.0580 24 1 -3.8966 3.9558 -1.8563 25 1 -2.4372 2.3448 -0.7813 26 1 -0.3633 -0.9786 0.3137 27 1 -0.3634 0.7610 0.6907 28 1 -0.3634 0.2176 -1.0043 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8708 0.8752 0.9834 32 1 3.9922 0.9873 -0.7888 33 1 4.2641 3.1317 -1.8820 34 1 5.0605 5.4523 -1.6892 35 1 3.9630 2.8675 2.3638 36 1 6.7761 6.3451 2.3441 37 1 5.4878 7.5245 2.7473 38 1 1.5630 1.7474 -3.3154 39 1 1.1377 0.3532 -2.2940 40 1 2.8365 0.8636 -2.4407 41 1 -0.4373 1.7656 -1.3327 42 1 0.0753 3.0078 -0.1654 43 1 -2.2674 5.6312 -3.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170430403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:56 Heat of formation + Delta-G solvation = -25.806823 kcal Electronic energy + Delta-G solvation = -24039.351007 eV Core-core repulsion = 20665.075979 eV Total energy + Delta-G solvation = -3374.275028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93226 -38.92447 -37.30234 -36.09374 -33.08593 -31.86250 -31.37431 -30.14354 -28.48210 -27.48077 -25.79360 -24.93309 -23.62210 -22.68511 -21.42925 -20.87899 -19.17979 -17.69458 -17.32581 -17.18416 -16.80408 -15.99187 -15.50052 -14.75758 -14.52458 -14.26277 -14.05398 -13.68758 -13.63340 -13.53664 -13.25641 -12.80589 -12.63565 -12.47188 -12.08313 -12.05115 -11.81818 -11.52253 -11.38442 -11.11032 -11.08451 -10.80499 -10.68167 -10.45707 -10.42369 -10.25804 -10.09586 -9.76804 -9.24600 -8.53241 -8.49965 -7.70081 -7.18399 -5.99196 -3.94299 1.46474 1.54601 2.94202 3.30962 3.38278 3.39083 3.59823 3.87529 4.46332 4.68571 4.73775 4.76895 4.90307 5.01569 5.28280 5.30736 5.32075 5.39996 5.43260 5.47168 5.56535 5.69920 5.81166 5.87381 5.96716 6.01560 6.07328 6.17694 6.19419 6.25151 6.34396 6.36464 6.46711 6.55451 6.58768 6.67026 6.76444 6.91430 6.96250 7.07217 7.38024 7.70742 7.97139 8.11761 8.73730 9.12025 9.63720 11.14435 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.005440 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.984791 B = 5145.842477 C = 6161.387590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.152 4.152 3 C 0.081 3.919 4 H 0.075 0.925 5 C -0.065 4.065 6 C -0.049 4.049 7 C -0.069 4.069 8 C -0.096 4.096 9 C 0.020 3.980 10 C 0.023 3.977 11 C -0.103 4.103 12 O -0.314 6.314 13 C 0.214 3.786 14 O -0.313 6.313 15 N -0.515 5.515 16 C 0.030 3.970 17 C 0.156 3.844 18 C -0.500 4.500 19 H 0.079 0.921 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.869 3.131 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.048 0.952 41 H 0.005 0.995 42 H 0.017 0.983 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.740 -6.551 9.106 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C -0.028 4.028 4 H 0.093 0.907 5 C -0.102 4.102 6 C -0.050 4.050 7 C -0.087 4.087 8 C -0.114 4.114 9 C -0.024 4.024 10 C -0.021 4.021 11 C -0.122 4.122 12 O -0.231 6.231 13 C 0.102 3.898 14 O -0.229 6.229 15 N -0.238 5.238 16 C -0.119 4.119 17 C 0.030 3.970 18 C -0.539 4.539 19 H 0.097 0.903 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.697 3.303 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.035 0.965 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.851 -5.811 9.076 17.550 hybrid contribution -1.436 -0.449 0.908 1.757 sum 12.415 -6.260 9.985 17.118 Atomic orbital electron populations 1.22097 0.95783 1.00681 1.03101 1.22219 0.96482 0.98592 1.01808 1.21865 0.93472 0.92400 0.95081 0.90676 1.20613 0.95739 0.91807 1.02087 1.19404 0.97411 0.96799 0.91344 1.20777 0.96335 0.92519 0.99072 1.20091 1.02408 0.95111 0.93806 1.19754 1.03718 0.83740 0.95209 1.19661 1.04646 0.93474 0.84322 1.19846 1.03405 0.90590 0.98327 1.87315 1.67588 1.36805 1.31394 1.25498 0.94638 0.91295 0.78356 1.87335 1.82196 1.27502 1.25878 1.62103 1.26309 1.34998 1.00420 1.22349 0.98742 0.95149 0.95629 1.20463 0.84057 0.95280 0.97238 1.21072 0.97894 1.18281 1.16648 0.90259 1.24882 0.98281 0.94943 0.95308 1.69892 1.23695 1.26103 1.34546 0.86958 0.82355 0.79526 0.81504 1.20368 1.21360 1.19142 0.93695 0.92688 0.91269 0.91357 0.92486 0.91265 0.90663 0.84330 0.85091 0.85503 0.90506 0.85730 0.90883 0.96153 0.93364 0.97797 0.96544 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.26 37.16 0.31 -2.13 16 2 C -0.15 -2.06 4.88 -26.73 -0.13 -2.19 16 3 C 0.08 1.26 1.90 -67.71 -0.13 1.14 16 4 H 0.08 1.28 7.47 -51.92 -0.39 0.89 16 5 C -0.06 -0.83 4.89 -27.88 -0.14 -0.97 16 6 C -0.05 -0.72 4.95 -104.62 -0.52 -1.24 16 7 C -0.07 -1.06 9.31 -39.58 -0.37 -1.43 16 8 C -0.10 -1.51 10.06 -39.47 -0.40 -1.91 16 9 C 0.02 0.32 7.15 -39.08 -0.28 0.04 16 10 C 0.02 0.37 7.15 -39.09 -0.28 0.09 16 11 C -0.10 -1.54 9.71 -39.47 -0.38 -1.92 16 12 O -0.31 -4.72 11.40 -45.69 -0.52 -5.24 16 13 C 0.21 2.50 8.89 101.05 0.90 3.40 16 14 O -0.31 -4.84 11.40 -45.70 -0.52 -5.36 16 15 N -0.52 -9.79 3.93 -236.33 -0.93 -10.72 16 16 C 0.03 0.51 8.09 60.06 0.49 0.99 16 17 C 0.16 3.61 2.61 -4.98 -0.01 3.60 16 18 C -0.50 -14.02 9.26 -34.44 -0.32 -14.33 16 19 H 0.08 2.43 8.00 -52.49 -0.42 2.01 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 22 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.90 7.64 -51.93 -0.40 0.50 16 28 H 0.07 1.20 4.75 -51.93 -0.25 0.95 16 29 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.07 0.90 6.80 -51.93 -0.35 0.54 16 33 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.41 7.61 -51.93 -0.40 1.02 16 39 H 0.02 0.33 5.17 -51.93 -0.27 0.06 16 40 H 0.05 0.68 6.84 -51.93 -0.36 0.32 16 41 H 0.00 0.11 3.97 -51.93 -0.21 -0.10 16 42 H 0.02 0.40 6.99 -51.93 -0.36 0.04 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -32.18 336.03 -8.42 -40.60 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.26 Total: 0.82 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.36 Total: -15.03 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.16 Total: -37.83 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.04 Total: -10.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.18 -8.42 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170430403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.798 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds