Wall clock time and date at job start Tue Mar 31 2020 07:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 H 1.09008 * 109.47157 * 55.83481 * 3 2 1 5 5 C 1.53000 * 109.47107 * 175.83407 * 3 2 1 6 6 C 1.50701 * 109.46811 * 184.99698 * 5 3 2 7 7 C 1.38253 * 119.93147 * 269.72690 * 6 5 3 8 8 C 1.38237 * 120.14216 * 179.69638 * 7 6 5 9 9 C 1.38546 * 120.02695 * 0.63457 * 8 7 6 10 10 C 1.39270 * 119.82902 * 359.64399 * 9 8 7 11 11 C 1.38240 * 119.92599 * 90.00777 * 6 5 3 12 12 O 1.36501 * 108.63476 * 180.02562 * 10 9 8 13 13 C 1.43994 * 105.48759 * 342.71487 * 12 10 9 14 14 O 1.36504 * 131.52678 * 179.64802 * 9 8 7 15 15 N 1.46904 * 109.47060 * 295.83615 * 3 2 1 16 16 C 1.46895 * 110.99709 * 318.16857 * 15 3 2 17 17 C 1.46897 * 110.99914 * 82.12071 * 15 3 2 18 18 C 1.50701 * 109.47043 * 159.87990 * 17 15 3 19 19 H 1.07994 * 119.99886 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00155 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99865 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47140 * 89.99845 * 22 20 18 24 24 H 1.48497 * 109.47201 * 209.99779 * 22 20 18 25 25 H 1.48504 * 109.47193 * 329.99905 * 22 20 18 26 26 H 1.09001 * 109.47143 * 197.77596 * 1 2 3 27 27 H 1.09003 * 109.47246 * 317.77122 * 1 2 3 28 28 H 1.08999 * 109.47609 * 77.77715 * 1 2 3 29 29 H 1.09002 * 109.46927 * 239.99514 * 2 1 3 30 30 H 1.09000 * 109.46987 * 120.00190 * 2 1 3 31 31 H 1.08992 * 109.47508 * 305.00113 * 5 3 2 32 32 H 1.09001 * 109.46651 * 65.00116 * 5 3 2 33 33 H 1.08005 * 119.92595 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.98481 * 180.27926 * 8 7 6 35 35 H 1.07997 * 119.98458 * 359.97438 * 11 6 5 36 36 H 1.08995 * 110.57231 * 268.56365 * 13 12 10 37 37 H 1.08999 * 110.56730 * 145.68725 * 13 12 10 38 38 H 1.09000 * 109.46960 * 183.95341 * 16 15 3 39 39 H 1.08999 * 109.47551 * 63.95456 * 16 15 3 40 40 H 1.08999 * 109.47341 * 303.94913 * 16 15 3 41 41 H 1.09006 * 109.47265 * 279.87778 * 17 15 3 42 42 H 1.08994 * 109.47351 * 39.87873 * 17 15 3 43 43 H 0.97002 * 119.99899 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9775 0.8504 5 6 3.5664 1.4437 0.1048 6 6 4.0602 2.8622 0.2283 7 6 4.3735 3.5850 -0.9078 8 6 4.8208 4.8885 -0.7998 9 6 4.9688 5.4695 0.4492 10 6 4.6588 4.7394 1.5940 11 6 4.2045 3.4358 1.4778 12 8 4.8855 5.5250 2.6870 13 6 5.7234 6.5994 2.2212 14 8 5.3903 6.7123 0.8250 15 7 1.6342 2.1053 -1.2466 16 6 1.8038 1.2096 -2.3984 17 6 0.2511 2.5924 -1.1577 18 6 0.0272 3.6610 -2.1965 19 1 0.8316 3.9491 -2.8569 20 6 -1.2051 4.2701 -2.3044 21 7 -1.4003 5.2029 -3.2106 22 14 -2.5967 3.7712 -1.1625 23 1 -2.5627 4.6165 0.0580 24 1 -3.8966 3.9558 -1.8563 25 1 -2.4372 2.3448 -0.7813 26 1 -0.3633 -0.9786 0.3137 27 1 -0.3634 0.7610 0.6907 28 1 -0.3634 0.2176 -1.0043 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8708 0.8752 0.9834 32 1 3.9922 0.9873 -0.7888 33 1 4.2641 3.1317 -1.8820 34 1 5.0605 5.4523 -1.6892 35 1 3.9630 2.8675 2.3638 36 1 6.7761 6.3451 2.3441 37 1 5.4878 7.5245 2.7473 38 1 1.5630 1.7474 -3.3154 39 1 1.1377 0.3532 -2.2940 40 1 2.8365 0.8636 -2.4407 41 1 -0.4373 1.7656 -1.3327 42 1 0.0753 3.0078 -0.1654 43 1 -2.2674 5.6312 -3.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170430403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:56 Heat of formation + Delta-G solvation = -46.593905 kcal Electronic energy + Delta-G solvation = -24040.252403 eV Core-core repulsion = 20665.075979 eV Total energy + Delta-G solvation = -3375.176424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.03212 -40.18908 -38.53754 -37.21554 -34.99082 -33.40358 -32.62031 -31.30385 -30.05567 -28.88652 -26.92658 -26.37785 -24.90882 -23.85155 -22.61884 -22.54649 -20.49304 -18.88897 -18.80382 -18.41834 -18.25504 -17.06451 -16.91554 -16.49063 -16.00607 -15.39387 -15.27558 -15.16873 -14.83834 -14.74990 -14.65150 -14.32069 -13.93876 -13.66201 -13.55641 -13.29254 -13.21760 -12.97110 -12.78508 -12.62254 -12.32922 -12.21300 -12.02706 -11.89744 -11.73936 -11.69287 -11.53661 -11.39331 -11.18313 -10.72132 -9.70987 -8.86665 -8.66391 -8.23625 -6.22988 0.28156 0.36534 1.33056 1.33348 1.43596 1.87825 2.35623 2.61059 2.68961 3.10784 3.38876 3.60730 3.84624 3.86190 4.06688 4.18402 4.21982 4.27248 4.33443 4.34327 4.44606 4.56792 4.61164 4.66131 4.79731 4.79865 4.89572 4.97731 5.05573 5.08853 5.12243 5.16322 5.20611 5.22506 5.28270 5.41634 5.44130 5.50499 5.62820 5.66976 5.75614 6.11797 6.24427 6.58249 6.81106 6.84950 7.39598 8.93610 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.005440 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.984791 B = 5145.842477 C = 6161.387590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C 0.080 3.920 4 H 0.059 0.941 5 C -0.057 4.057 6 C -0.052 4.052 7 C -0.080 4.080 8 C -0.114 4.114 9 C 0.000 4.000 10 C 0.009 3.991 11 C -0.107 4.107 12 O -0.327 6.327 13 C 0.205 3.795 14 O -0.333 6.333 15 N -0.530 5.530 16 C 0.034 3.966 17 C 0.169 3.831 18 C -0.501 4.501 19 H 0.036 0.964 20 C 0.004 3.996 21 N -0.953 5.953 22 Si 0.936 3.064 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.243 1.243 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.156 0.844 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.303 -9.070 11.371 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.029 4.029 4 H 0.078 0.922 5 C -0.094 4.094 6 C -0.052 4.052 7 C -0.098 4.098 8 C -0.132 4.132 9 C -0.044 4.044 10 C -0.035 4.035 11 C -0.125 4.125 12 O -0.244 6.244 13 C 0.094 3.906 14 O -0.250 6.250 15 N -0.253 5.253 16 C -0.114 4.114 17 C 0.042 3.958 18 C -0.539 4.539 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.761 3.239 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.167 1.167 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.173 0.827 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.102 0.898 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.444 -8.353 11.355 20.183 hybrid contribution -1.493 0.396 0.188 1.556 sum 12.951 -7.957 11.543 19.087 Atomic orbital electron populations 1.22078 0.97196 1.01487 1.01068 1.22162 0.95106 0.97153 1.03883 1.21939 0.95236 0.93309 0.92391 0.92247 1.20641 0.93402 0.90926 1.04435 1.19678 0.96788 0.97825 0.90938 1.20936 0.96596 0.92540 0.99709 1.20303 1.03037 0.95761 0.94142 1.19976 1.04413 0.84362 0.95665 1.19942 1.04909 0.94115 0.84495 1.20170 1.02692 0.90418 0.99238 1.87275 1.68369 1.37415 1.31378 1.26058 0.95822 0.91917 0.76779 1.87289 1.82428 1.27351 1.27944 1.61951 1.23470 1.37069 1.02812 1.22315 1.01104 0.94507 0.93446 1.20162 0.87027 0.93944 0.94637 1.21393 0.96619 1.19164 1.16772 0.94539 1.25787 1.01362 0.95019 0.97056 1.70060 1.24528 1.27980 1.36916 0.85872 0.78634 0.80359 0.79057 1.20098 1.21028 1.16687 0.91353 0.94220 0.93832 0.90222 0.89352 0.87872 0.89207 0.84110 0.84782 0.83318 0.87600 0.82726 0.94310 0.95141 0.89818 0.97154 0.97416 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 8.26 71.98 0.59 -3.83 16 2 C -0.14 -3.31 4.88 30.59 0.15 -3.16 16 3 C 0.08 2.26 1.90 44.91 0.09 2.34 16 4 H 0.06 1.88 7.47 -2.38 -0.02 1.86 16 5 C -0.06 -1.25 4.89 29.85 0.15 -1.10 16 6 C -0.05 -1.44 4.95 -19.86 -0.10 -1.54 16 7 C -0.08 -2.43 9.31 22.27 0.21 -2.23 16 8 C -0.11 -3.70 10.06 22.34 0.22 -3.47 16 9 C 0.00 -0.01 7.15 22.59 0.16 0.15 16 10 C 0.01 0.29 7.15 22.59 0.16 0.46 16 11 C -0.11 -3.00 9.71 22.34 0.22 -2.78 16 12 O -0.33 -9.48 11.40 -76.06 -0.87 -10.35 16 13 C 0.20 4.51 8.89 113.37 1.01 5.52 16 14 O -0.33 -10.33 11.40 -76.10 -0.87 -11.20 16 15 N -0.53 -19.62 3.93 -901.62 -3.54 -23.16 16 16 C 0.03 1.13 8.09 127.69 1.03 2.16 16 17 C 0.17 7.83 2.61 85.56 0.22 8.06 16 18 C -0.50 -28.95 9.26 25.60 0.24 -28.71 16 19 H 0.04 2.36 8.00 -2.91 -0.02 2.34 16 20 C 0.00 0.23 5.47 84.66 0.46 0.69 16 21 N -0.95 -60.99 13.96 21.45 0.30 -60.70 16 22 Si 0.94 45.04 27.47 68.60 1.88 46.93 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.19 7.64 -2.39 -0.02 1.17 16 28 H 0.04 1.41 4.75 -2.39 -0.01 1.39 16 29 H 0.08 1.69 6.17 -2.39 -0.01 1.67 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 32 H 0.09 1.75 6.80 -2.39 -0.02 1.74 16 33 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 39 H 0.03 0.94 5.17 -2.39 -0.01 0.92 16 40 H 0.08 2.13 6.84 -2.39 -0.02 2.11 16 41 H 0.01 0.50 3.97 -2.38 -0.01 0.49 16 42 H 0.01 0.37 6.99 -2.39 -0.02 0.36 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -72.99 336.03 2.67 -70.32 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.95 Total: 15.60 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.81 Total: -27.44 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -3.25 Total: -83.86 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.73 Total: -21.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -72.99 2.67 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170430403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.726 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds