Wall clock time and date at job start Tue Mar 31 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.52999 * 109.46959 * 119.99635 * 2 1 3 5 5 O 1.42898 * 109.46871 * 175.00018 * 4 2 1 6 6 C 1.42907 * 114.00069 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47132 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00533 * 4.46276 * 7 6 5 9 9 N 1.34781 * 119.99883 * 184.45863 * 7 6 5 10 10 C 1.37100 * 120.00059 * 5.02238 * 9 7 6 11 11 H 1.08002 * 119.99606 * 38.30309 * 10 9 7 12 12 C 1.38947 * 119.99982 * 218.30761 * 10 9 7 13 13 N 1.31411 * 119.99964 * 20.08237 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 200.07800 * 12 10 9 15 15 H 1.48504 * 109.46707 * 60.00325 * 14 12 10 16 16 H 1.48500 * 109.47125 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47479 * 300.00241 * 14 12 10 18 18 C 1.46499 * 120.00164 * 185.02424 * 9 7 6 19 19 C 1.50695 * 109.47068 * 269.99925 * 18 9 7 20 20 C 1.38240 * 120.00140 * 89.99733 * 19 18 9 21 21 C 1.38230 * 120.00251 * 179.97438 * 20 19 18 22 22 C 1.38241 * 119.99837 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00042 * 0.27347 * 22 21 20 24 24 C 1.38230 * 119.99798 * 359.51568 * 23 22 21 25 25 H 1.08997 * 109.47059 * 300.00520 * 1 2 3 26 26 H 1.09004 * 109.46785 * 59.99960 * 1 2 3 27 27 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46925 * 240.00011 * 2 1 3 29 29 H 1.08998 * 109.47224 * 59.99404 * 3 2 1 30 30 H 1.08994 * 109.47187 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46946 * 300.00063 * 3 2 1 32 32 H 1.08996 * 109.46950 * 55.00607 * 4 2 1 33 33 H 1.09004 * 109.47248 * 295.00257 * 4 2 1 34 34 H 1.08997 * 109.46515 * 60.00270 * 6 5 4 35 35 H 1.08997 * 109.47006 * 300.00689 * 6 5 4 36 36 H 0.97007 * 119.99920 * 174.97514 * 13 12 10 37 37 H 1.08999 * 109.47544 * 149.99752 * 18 9 7 38 38 H 1.09005 * 109.46776 * 29.99800 * 18 9 7 39 39 H 1.08007 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.00633 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.99954 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.99854 * 179.72668 * 23 22 21 43 43 H 1.08005 * 120.00138 * 180.27548 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1920 6 6 4.0451 -1.4845 2.3182 7 6 5.5420 -1.5364 2.1529 8 8 6.0676 -0.9848 1.2092 9 7 6.2970 -2.1958 3.0539 10 6 5.6976 -2.9052 4.0624 11 1 4.7922 -3.4608 3.8675 12 6 6.2550 -2.9094 5.3352 13 7 7.0928 -1.9607 5.6887 14 14 5.8132 -4.2635 6.5438 15 1 6.2034 -5.5795 5.9769 16 1 6.5353 -4.0409 7.8222 17 1 4.3495 -4.2464 6.7932 18 6 7.7581 -2.1544 2.9557 19 6 8.2363 -3.2956 2.0956 20 6 8.3706 -3.1233 0.7306 21 6 8.8097 -4.1700 -0.0583 22 6 9.1150 -5.3890 0.5178 23 6 8.9758 -5.5629 1.8821 24 6 8.5409 -4.5149 2.6716 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6055 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.6521 -2.4988 2.3867 35 1 3.7983 -0.9370 3.2278 36 1 7.4253 -1.9218 6.5992 37 1 8.1920 -2.2435 3.9517 38 1 8.0655 -1.2089 2.5087 39 1 8.1324 -2.1708 0.2805 40 1 8.9150 -4.0353 -1.1247 41 1 9.4585 -6.2067 -0.0985 42 1 9.2101 -6.5165 2.3316 43 1 8.4363 -4.6493 3.7381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180751920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:52 Heat of formation + Delta-G solvation = -65.483675 kcal Electronic energy + Delta-G solvation = -23437.106412 eV Core-core repulsion = 20061.110867 eV Total energy + Delta-G solvation = -3375.995546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.10824 -38.21635 -37.29796 -34.97010 -34.46016 -31.91092 -30.86773 -30.24015 -27.83792 -27.04102 -25.85893 -25.15836 -23.90037 -21.87432 -20.71532 -20.15125 -19.16177 -17.18632 -16.52999 -16.05464 -15.76474 -15.44307 -14.75271 -14.58154 -14.48194 -14.26177 -14.20194 -13.85196 -13.34972 -12.86616 -12.78055 -12.67673 -12.30538 -12.07501 -12.02762 -11.72128 -11.50506 -11.35243 -11.28542 -10.97325 -10.91265 -10.80261 -10.65155 -10.51098 -10.37511 -10.33172 -10.14719 -9.22520 -9.10043 -8.51153 -8.28845 -8.02351 -7.56953 -6.46976 -4.17422 1.97360 2.04127 3.05213 3.14759 3.16689 3.80526 3.87234 4.09163 4.42386 4.87732 4.94777 4.99193 5.11586 5.43191 5.45788 5.51401 5.58659 5.61442 5.64470 5.67493 5.83881 5.89619 5.92574 5.99662 6.04713 6.10901 6.14267 6.16240 6.22154 6.27063 6.40782 6.50745 6.53082 6.65301 6.78807 7.07227 7.09008 7.15417 7.35537 7.48446 7.66117 7.68455 7.85732 8.28645 8.99650 9.43828 9.87264 10.55258 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.005162 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.086384 B = 5423.406375 C = 6968.027731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.367 6.367 6 C 0.066 3.934 7 C 0.479 3.521 8 O -0.583 6.583 9 N -0.432 5.432 10 C -0.344 4.344 11 H 0.087 0.913 12 C 0.049 3.951 13 N -0.858 5.858 14 Si 0.911 3.089 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.149 3.851 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.097 4.097 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -1.763 -5.017 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.013 4.013 5 O -0.286 6.286 6 C -0.014 4.014 7 C 0.267 3.733 8 O -0.467 6.467 9 N -0.152 5.152 10 C -0.471 4.471 11 H 0.104 0.896 12 C -0.158 4.158 13 N -0.494 5.494 14 Si 0.737 3.263 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.026 3.974 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.116 4.116 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.418 -1.369 -5.456 7.153 hybrid contribution -0.500 -0.972 1.086 1.541 sum -4.918 -2.340 -4.370 6.983 Atomic orbital electron populations 1.21783 0.94767 1.01723 1.01895 1.21066 0.94918 0.97085 0.98218 1.21777 1.02604 0.94936 1.00806 1.22526 0.82424 0.98692 0.97608 1.87949 1.18458 1.79079 1.43086 1.22039 0.93466 0.96984 0.88876 1.20044 0.88086 0.80402 0.84768 1.90524 1.74170 1.48808 1.33172 1.43254 1.03574 1.43406 1.24999 1.19356 1.11749 1.27732 0.88288 0.89572 1.25369 0.96309 0.96496 0.97603 1.69822 1.31062 1.29370 1.19139 0.86249 0.79005 0.81638 0.79390 1.19539 1.20745 1.19685 1.20419 0.82553 0.93932 1.00510 1.20618 0.96422 0.96528 0.94361 1.21303 0.97800 0.99297 0.93637 1.21054 1.01143 0.93709 0.99180 1.20965 1.02166 0.97173 0.95011 1.21037 1.01542 0.98577 0.93992 1.21109 0.97863 0.92610 0.99991 0.92625 0.92307 0.92679 0.90478 0.93103 0.91313 0.93231 0.93868 0.93685 0.91822 0.90949 0.91652 0.86840 0.91798 0.85655 0.86998 0.87163 0.86984 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.09 -1.24 3.16 -90.62 -0.29 -1.52 16 3 C -0.14 -1.89 9.09 37.16 0.34 -1.56 16 4 C 0.06 0.99 5.32 37.16 0.20 1.19 16 5 O -0.37 -7.45 9.42 -55.10 -0.52 -7.97 16 6 C 0.07 1.39 5.30 36.00 0.19 1.58 16 7 C 0.48 11.91 7.69 -10.99 -0.08 11.82 16 8 O -0.58 -15.71 15.33 -14.32 -0.22 -15.93 16 9 N -0.43 -10.71 2.50 -116.10 -0.29 -11.00 16 10 C -0.34 -8.38 8.57 -14.93 -0.13 -8.51 16 11 H 0.09 2.03 7.00 -52.49 -0.37 1.66 16 12 C 0.05 1.18 4.98 -17.47 -0.09 1.09 16 13 N -0.86 -21.57 11.43 55.50 0.63 -20.94 16 14 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 C 0.15 3.54 5.09 -5.20 -0.03 3.51 16 19 C -0.08 -1.68 5.46 -104.62 -0.57 -2.25 16 20 C -0.10 -2.07 9.57 -39.58 -0.38 -2.45 16 21 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 23 C -0.13 -2.30 10.05 -39.59 -0.40 -2.69 16 24 C -0.10 -1.93 9.70 -39.58 -0.38 -2.32 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.26 7.34 -51.93 -0.38 0.88 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 37 H 0.11 2.81 5.47 -51.93 -0.28 2.52 16 38 H 0.06 1.56 7.44 -51.93 -0.39 1.18 16 39 H 0.13 2.68 7.38 -52.48 -0.39 2.29 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -28.43 359.14 -8.93 -37.36 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.84 Total: 8.04 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.07 Total: -8.55 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.34 Total: -31.94 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.74 Total: -23.90 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.43 -8.93 -37.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180751920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.125 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds