Wall clock time and date at job start Tue Mar 31 2020 07:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.52999 * 109.46959 * 119.99635 * 2 1 3 5 5 O 1.42898 * 109.46871 * 175.00018 * 4 2 1 6 6 C 1.42907 * 114.00069 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47132 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00533 * 4.46276 * 7 6 5 9 9 N 1.34781 * 119.99883 * 184.45863 * 7 6 5 10 10 C 1.37100 * 120.00059 * 5.02238 * 9 7 6 11 11 H 1.08002 * 119.99606 * 38.30309 * 10 9 7 12 12 C 1.38947 * 119.99982 * 218.30761 * 10 9 7 13 13 N 1.31411 * 119.99964 * 20.08237 * 12 10 9 14 14 Si 1.86800 * 119.99872 * 200.07800 * 12 10 9 15 15 H 1.48504 * 109.46707 * 60.00325 * 14 12 10 16 16 H 1.48500 * 109.47125 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47479 * 300.00241 * 14 12 10 18 18 C 1.46499 * 120.00164 * 185.02424 * 9 7 6 19 19 C 1.50695 * 109.47068 * 269.99925 * 18 9 7 20 20 C 1.38240 * 120.00140 * 89.99733 * 19 18 9 21 21 C 1.38230 * 120.00251 * 179.97438 * 20 19 18 22 22 C 1.38241 * 119.99837 * 359.97438 * 21 20 19 23 23 C 1.38236 * 120.00042 * 0.27347 * 22 21 20 24 24 C 1.38230 * 119.99798 * 359.51568 * 23 22 21 25 25 H 1.08997 * 109.47059 * 300.00520 * 1 2 3 26 26 H 1.09004 * 109.46785 * 59.99960 * 1 2 3 27 27 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46925 * 240.00011 * 2 1 3 29 29 H 1.08998 * 109.47224 * 59.99404 * 3 2 1 30 30 H 1.08994 * 109.47187 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46946 * 300.00063 * 3 2 1 32 32 H 1.08996 * 109.46950 * 55.00607 * 4 2 1 33 33 H 1.09004 * 109.47248 * 295.00257 * 4 2 1 34 34 H 1.08997 * 109.46515 * 60.00270 * 6 5 4 35 35 H 1.08997 * 109.47006 * 300.00689 * 6 5 4 36 36 H 0.97007 * 119.99920 * 174.97514 * 13 12 10 37 37 H 1.08999 * 109.47544 * 149.99752 * 18 9 7 38 38 H 1.09005 * 109.46776 * 29.99800 * 18 9 7 39 39 H 1.08007 * 119.99832 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.00633 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.99954 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.99854 * 179.72668 * 23 22 21 43 43 H 1.08005 * 120.00138 * 180.27548 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1920 6 6 4.0451 -1.4845 2.3182 7 6 5.5420 -1.5364 2.1529 8 8 6.0676 -0.9848 1.2092 9 7 6.2970 -2.1958 3.0539 10 6 5.6976 -2.9052 4.0624 11 1 4.7922 -3.4608 3.8675 12 6 6.2550 -2.9094 5.3352 13 7 7.0928 -1.9607 5.6887 14 14 5.8132 -4.2635 6.5438 15 1 6.2034 -5.5795 5.9769 16 1 6.5353 -4.0409 7.8222 17 1 4.3495 -4.2464 6.7932 18 6 7.7581 -2.1544 2.9557 19 6 8.2363 -3.2956 2.0956 20 6 8.3706 -3.1233 0.7306 21 6 8.8097 -4.1700 -0.0583 22 6 9.1150 -5.3890 0.5178 23 6 8.9758 -5.5629 1.8821 24 6 8.5409 -4.5149 2.6716 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6055 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.6521 -2.4988 2.3867 35 1 3.7983 -0.9370 3.2278 36 1 7.4253 -1.9218 6.5992 37 1 8.1920 -2.2435 3.9517 38 1 8.0655 -1.2089 2.5087 39 1 8.1324 -2.1708 0.2805 40 1 8.9150 -4.0353 -1.1247 41 1 9.4585 -6.2067 -0.0985 42 1 9.2101 -6.5165 2.3316 43 1 8.4363 -4.6493 3.7381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180751920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:51 Heat of formation + Delta-G solvation = -78.716867 kcal Electronic energy + Delta-G solvation = -23437.680247 eV Core-core repulsion = 20061.110867 eV Total energy + Delta-G solvation = -3376.569380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85827 -39.74210 -38.79510 -36.74127 -35.79768 -33.72983 -32.55410 -31.70013 -29.41562 -28.00770 -27.52474 -26.68098 -25.57104 -23.34424 -22.26382 -21.33291 -20.95441 -18.95124 -18.18535 -17.54922 -17.26683 -17.08293 -16.38489 -16.27038 -16.01097 -15.75894 -15.67892 -15.22113 -14.82707 -14.41354 -14.21639 -13.98184 -13.65367 -13.57704 -13.24116 -13.13477 -13.07707 -12.91374 -12.79344 -12.65442 -12.51572 -12.12239 -11.97473 -11.92349 -11.77706 -11.75016 -11.49896 -11.07682 -10.58375 -10.39600 -9.75283 -9.57227 -9.49454 -8.33000 -6.10865 0.49736 0.56984 1.41779 1.49004 1.56950 1.96203 2.21763 2.44585 2.93177 3.04907 3.46086 3.92460 4.00932 4.04049 4.12034 4.21557 4.25300 4.25926 4.35663 4.37947 4.46938 4.51504 4.59092 4.65310 4.73513 4.78336 4.81687 4.86584 4.99775 5.05367 5.13836 5.21457 5.21657 5.27334 5.40049 5.44529 5.46025 5.63911 5.65340 5.87611 5.98539 6.20375 6.22395 6.40403 7.09645 7.52622 7.96977 8.70249 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.005162 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.086384 B = 5423.406375 C = 6968.027731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.142 4.142 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.079 3.921 7 C 0.457 3.543 8 O -0.617 6.617 9 N -0.436 5.436 10 C -0.360 4.360 11 H 0.095 0.905 12 C 0.015 3.985 13 N -0.889 5.889 14 Si 0.977 3.023 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.262 1.262 18 C 0.154 3.846 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.276 0.724 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -4.337 -5.338 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.021 4.021 5 O -0.312 6.312 6 C 0.000 4.000 7 C 0.247 3.753 8 O -0.504 6.504 9 N -0.155 5.155 10 C -0.487 4.487 11 H 0.112 0.888 12 C -0.189 4.189 13 N -0.525 5.525 14 Si 0.800 3.200 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.186 1.186 18 C 0.031 3.969 19 C -0.102 4.102 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.131 4.131 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.583 -3.945 -5.775 8.949 hybrid contribution -0.096 -0.148 1.138 1.151 sum -5.679 -4.093 -4.638 8.397 Atomic orbital electron populations 1.21734 0.91839 1.02723 1.03081 1.21126 0.97183 0.96346 0.96622 1.21758 1.00291 0.95641 1.02263 1.22880 0.79835 1.00116 0.99273 1.87932 1.21464 1.79104 1.42738 1.21824 0.91013 0.97883 0.89317 1.20797 0.89900 0.80103 0.84533 1.90484 1.75169 1.50227 1.34490 1.43489 1.03963 1.43021 1.25043 1.19659 1.12412 1.28053 0.88606 0.88777 1.26156 0.95817 0.98000 0.98963 1.69935 1.31947 1.30956 1.19696 0.85230 0.79117 0.78713 0.76892 1.18957 1.20725 1.18624 1.20247 0.82541 0.94086 1.00031 1.20418 0.98598 0.96540 0.94657 1.21210 0.99700 0.99655 0.93588 1.21382 0.99681 0.93256 1.00381 1.21448 0.99945 0.97545 0.95019 1.21423 0.99687 0.98879 0.94370 1.21118 0.99114 0.92916 0.99989 0.91794 0.90777 0.91802 0.91532 0.92310 0.94845 0.91140 0.92371 0.92715 0.90451 0.90679 0.91454 0.88228 0.94397 0.88085 0.84173 0.82700 0.83498 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 2 C -0.09 -2.39 3.16 -10.79 -0.03 -2.43 16 3 C -0.14 -3.71 9.09 71.98 0.65 -3.06 16 4 C 0.06 1.66 5.32 71.98 0.38 2.04 16 5 O -0.39 -16.36 9.42 -129.98 -1.22 -17.58 16 6 C 0.08 3.42 5.30 71.23 0.38 3.79 16 7 C 0.46 23.88 7.69 87.65 0.67 24.55 16 8 O -0.62 -35.43 15.33 15.94 0.24 -35.19 16 9 N -0.44 -22.60 2.50 -639.61 -1.60 -24.20 16 10 C -0.36 -17.88 8.57 84.04 0.72 -17.16 16 11 H 0.09 4.43 7.00 -2.91 -0.02 4.41 16 12 C 0.01 0.72 4.98 84.93 0.42 1.14 16 13 N -0.89 -45.88 11.43 21.66 0.25 -45.64 16 14 Si 0.98 37.65 29.60 68.60 2.03 39.69 16 15 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 16 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 18 C 0.15 7.81 5.09 85.63 0.44 8.25 16 19 C -0.10 -4.51 5.46 -19.87 -0.11 -4.62 16 20 C -0.12 -5.16 9.57 22.27 0.21 -4.94 16 21 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 22 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.11 -4.46 9.70 22.27 0.22 -4.25 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 3.08 7.34 -2.39 -0.02 3.06 16 35 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.28 13.39 8.32 -92.70 -0.77 12.61 16 37 H 0.10 5.26 5.47 -2.39 -0.01 5.24 16 38 H 0.04 2.03 7.44 -2.38 -0.02 2.01 16 39 H 0.10 4.65 7.38 -2.91 -0.02 4.63 16 40 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 41 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 42 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -64.68 359.14 5.96 -58.72 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.97 Total: 33.71 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.29 Total: -9.51 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.35 Total: -69.83 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.98 Total: -52.77 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.69 kcal Total: -64.68 5.96 -58.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180751920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds