Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47302 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47555 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00415 * 270.00154 * 5 4 3 7 7 H 1.08004 * 119.99712 * 52.98382 * 6 5 4 8 8 C 1.38947 * 120.00283 * 232.98182 * 6 5 4 9 9 N 1.31408 * 119.99757 * 16.27862 * 8 6 5 10 10 Si 1.86799 * 119.99959 * 196.27326 * 8 6 5 11 11 H 1.48505 * 109.47136 * 90.00556 * 10 8 6 12 12 H 1.48496 * 109.46999 * 210.00200 * 10 8 6 13 13 H 1.48493 * 109.47368 * 330.00498 * 10 8 6 14 14 C 1.34780 * 119.99550 * 90.00088 * 5 4 3 15 15 O 1.21288 * 120.00295 * 5.61283 * 14 5 4 16 16 C 1.50705 * 119.99679 * 185.61015 * 14 5 4 17 17 H 1.09004 * 109.47109 * 311.80425 * 16 14 5 18 18 C 1.52995 * 109.47154 * 71.80325 * 16 14 5 19 19 O 1.42901 * 109.47468 * 183.22097 * 18 16 14 20 20 C 1.50701 * 109.47117 * 191.80204 * 16 14 5 21 21 C 1.38235 * 119.99840 * 299.73220 * 20 16 14 22 22 C 1.38237 * 119.99797 * 179.78555 * 21 20 16 23 23 C 1.38244 * 119.99713 * 0.44132 * 22 21 20 24 24 C 1.38230 * 119.99946 * 359.80813 * 23 22 21 25 25 C 1.38229 * 120.00186 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47289 * 300.00354 * 1 2 3 27 27 H 1.09003 * 109.47127 * 59.99822 * 1 2 3 28 28 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46965 * 240.00023 * 2 1 3 30 30 H 1.09003 * 109.46562 * 119.99665 * 2 1 3 31 31 H 1.09006 * 109.47111 * 59.99824 * 3 2 1 32 32 H 1.09003 * 109.47291 * 300.00078 * 3 2 1 33 33 H 1.09006 * 109.46932 * 60.00019 * 4 3 2 34 34 H 1.09003 * 109.47260 * 300.00401 * 4 3 2 35 35 H 0.97003 * 120.00128 * 184.92725 * 9 8 6 36 36 H 1.09006 * 109.47217 * 63.21859 * 18 16 14 37 37 H 1.09000 * 109.47351 * 303.22478 * 18 16 14 38 38 H 0.96698 * 114.00206 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00050 * 359.97438 * 21 20 16 40 40 H 1.07991 * 120.00363 * 180.26917 * 22 21 20 41 41 H 1.07997 * 119.99396 * 179.83366 * 23 22 21 42 42 H 1.08002 * 119.99738 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00046 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2874 3.4693 -1.1875 7 1 3.5110 3.5127 -1.9370 8 6 5.5182 4.0680 -1.4268 9 7 6.5559 3.7566 -0.6830 10 14 5.6979 5.3151 -2.8058 11 1 5.4174 6.6761 -2.2820 12 1 7.0826 5.2662 -3.3401 13 1 4.7368 4.9947 -3.8914 14 6 4.2825 3.4596 1.1670 15 8 4.1782 2.8583 2.2152 16 6 4.6628 4.9179 1.1695 17 1 5.4632 5.0859 0.4488 18 6 3.4462 5.7629 0.7866 19 8 3.8250 7.1389 0.7158 20 6 5.1349 5.3116 2.5454 21 6 4.2846 5.1911 3.6286 22 6 4.7191 5.5481 4.8914 23 6 6.0010 6.0341 5.0696 24 6 6.8495 6.1594 3.9855 25 6 6.4164 5.7983 2.7235 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 7.3965 4.2256 -0.8026 36 1 2.6666 5.6389 1.5383 37 1 3.0698 5.4392 -0.1838 38 1 3.1013 7.7344 0.4777 39 1 3.2818 4.8152 3.4888 40 1 4.0564 5.4499 5.7384 41 1 6.3395 6.3155 6.0557 42 1 7.8508 6.5396 4.1246 43 1 7.0796 5.8958 1.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181923707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -69.767119 kcal Electronic energy + Delta-G solvation = -24428.792294 eV Core-core repulsion = 21052.611004 eV Total energy + Delta-G solvation = -3376.181290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.47218 -37.95305 -36.17084 -35.29111 -34.18936 -32.34553 -31.49902 -30.22682 -28.75600 -27.61509 -24.94008 -23.59157 -22.68220 -21.84751 -20.88209 -20.30756 -19.17664 -17.34516 -16.37590 -16.01897 -15.37271 -15.23352 -14.90418 -14.59408 -14.36688 -14.05397 -13.80769 -13.70453 -13.25132 -12.78316 -12.60077 -12.47983 -12.42633 -11.96030 -11.88175 -11.72954 -11.46949 -11.28822 -11.17422 -10.74234 -10.69923 -10.65123 -10.63136 -10.36563 -10.31795 -10.03430 -9.91443 -9.34369 -8.83279 -8.37901 -8.15422 -7.94201 -7.35538 -6.45246 -4.32628 2.06527 2.10366 3.12359 3.19623 3.22253 3.94820 4.06765 4.44084 4.70580 4.89098 5.09429 5.32791 5.37858 5.49751 5.50387 5.54397 5.60477 5.75275 5.87190 5.90102 6.06869 6.10298 6.16348 6.19246 6.21082 6.21965 6.32370 6.45594 6.47044 6.53851 6.57248 6.68608 6.73153 6.87781 6.98139 7.05161 7.10627 7.14175 7.34620 7.51206 7.69753 7.89249 8.16652 8.58491 8.86486 9.52833 9.96398 10.56953 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.007173 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.672226 B = 3902.441303 C = 5377.824886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.455 5.455 6 C -0.343 4.343 7 H 0.082 0.918 8 C 0.051 3.949 9 N -0.853 5.853 10 Si 0.900 3.100 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.529 3.471 15 O -0.595 6.595 16 C -0.069 4.069 17 H 0.136 0.864 18 C 0.095 3.905 19 O -0.569 6.569 20 C -0.034 4.034 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.104 4.104 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.272 0.728 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.369 0.631 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 2.672 2.242 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.174 5.174 6 C -0.471 4.471 7 H 0.100 0.900 8 C -0.156 4.156 9 N -0.488 5.488 10 Si 0.725 3.275 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.318 3.682 15 O -0.480 6.480 16 C -0.090 4.090 17 H 0.153 0.847 18 C 0.017 3.983 19 O -0.373 6.373 20 C -0.034 4.034 21 C -0.104 4.104 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.214 0.786 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.167 2.067 2.875 6.264 hybrid contribution -0.172 0.727 -0.938 1.199 sum -5.339 2.794 1.937 6.330 Atomic orbital electron populations 1.21756 0.96466 1.00833 1.01563 1.21457 0.95215 0.97578 1.01668 1.21918 0.97368 0.95701 1.01662 1.21371 0.92223 0.86160 1.01199 1.43223 1.59675 1.09528 1.05011 1.19251 0.97487 1.34839 0.95507 0.90033 1.25582 0.94480 0.98158 0.97409 1.70024 1.01184 1.37198 1.40395 0.86337 0.78024 0.81782 0.81348 1.18977 1.20741 1.19204 1.19800 0.77419 0.87756 0.83257 1.90523 1.56785 1.68421 1.32227 1.20445 1.00556 0.92582 0.95403 0.84672 1.22046 0.95254 0.80773 1.00242 1.86516 1.39721 1.17701 1.93355 1.19566 0.93540 0.95602 0.94706 1.20909 0.99767 0.97499 0.92185 1.20974 0.96217 1.00939 0.96867 1.20920 0.94522 1.01923 0.98072 1.20959 0.99166 1.01797 0.92998 1.21021 0.95638 0.98644 0.96924 0.92999 0.92996 0.93322 0.92260 0.92251 0.92508 0.92224 0.91822 0.92081 0.91720 0.94903 0.91424 0.78634 0.86784 0.87056 0.87153 0.86959 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.92 16 3 C -0.13 -2.28 5.54 -26.73 -0.15 -2.43 16 4 C 0.11 2.45 5.42 -4.05 -0.02 2.43 16 5 N -0.45 -11.03 2.42 -114.81 -0.28 -11.30 16 6 C -0.34 -8.31 7.39 -14.93 -0.11 -8.42 16 7 H 0.08 1.91 7.88 -52.48 -0.41 1.49 16 8 C 0.05 1.24 3.48 -17.47 -0.06 1.18 16 9 N -0.85 -22.32 11.51 55.50 0.64 -21.68 16 10 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 11 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 C 0.53 13.30 6.17 -10.98 -0.07 13.23 16 15 O -0.60 -16.08 14.31 5.55 0.08 -16.00 16 16 C -0.07 -1.60 1.75 -92.92 -0.16 -1.76 16 17 H 0.14 3.40 4.11 -51.93 -0.21 3.19 16 18 C 0.09 1.89 6.20 37.16 0.23 2.12 16 19 O -0.57 -10.49 13.37 -35.23 -0.47 -10.96 16 20 C -0.03 -0.75 4.24 -104.62 -0.44 -1.19 16 21 C -0.09 -1.76 7.81 -39.58 -0.31 -2.07 16 22 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.14 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 25 C -0.10 -2.17 9.67 -39.59 -0.38 -2.56 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 34 H 0.06 1.39 7.35 -51.93 -0.38 1.01 16 35 H 0.27 6.79 8.32 -40.82 -0.34 6.45 16 36 H 0.03 0.61 7.27 -51.93 -0.38 0.24 16 37 H 0.07 1.36 6.76 -51.93 -0.35 1.01 16 38 H 0.37 4.72 9.12 45.56 0.42 5.14 16 39 H 0.11 2.34 7.21 -52.49 -0.38 1.96 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.12 2.41 7.95 -52.48 -0.42 2.00 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -29.91 351.36 -8.12 -38.03 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -5.90 Total: 13.70 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.46 Total: -11.08 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.36 Total: -32.98 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.39 Total: -26.96 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.91 -8.12 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181923707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.739 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds