Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47302 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47555 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00415 * 270.00154 * 5 4 3 7 7 H 1.08004 * 119.99712 * 52.98382 * 6 5 4 8 8 C 1.38947 * 120.00283 * 232.98182 * 6 5 4 9 9 N 1.31408 * 119.99757 * 16.27862 * 8 6 5 10 10 Si 1.86799 * 119.99959 * 196.27326 * 8 6 5 11 11 H 1.48505 * 109.47136 * 90.00556 * 10 8 6 12 12 H 1.48496 * 109.46999 * 210.00200 * 10 8 6 13 13 H 1.48493 * 109.47368 * 330.00498 * 10 8 6 14 14 C 1.34780 * 119.99550 * 90.00088 * 5 4 3 15 15 O 1.21288 * 120.00295 * 5.61283 * 14 5 4 16 16 C 1.50705 * 119.99679 * 185.61015 * 14 5 4 17 17 H 1.09004 * 109.47109 * 311.80425 * 16 14 5 18 18 C 1.52995 * 109.47154 * 71.80325 * 16 14 5 19 19 O 1.42901 * 109.47468 * 183.22097 * 18 16 14 20 20 C 1.50701 * 109.47117 * 191.80204 * 16 14 5 21 21 C 1.38235 * 119.99840 * 299.73220 * 20 16 14 22 22 C 1.38237 * 119.99797 * 179.78555 * 21 20 16 23 23 C 1.38244 * 119.99713 * 0.44132 * 22 21 20 24 24 C 1.38230 * 119.99946 * 359.80813 * 23 22 21 25 25 C 1.38229 * 120.00186 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47289 * 300.00354 * 1 2 3 27 27 H 1.09003 * 109.47127 * 59.99822 * 1 2 3 28 28 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46965 * 240.00023 * 2 1 3 30 30 H 1.09003 * 109.46562 * 119.99665 * 2 1 3 31 31 H 1.09006 * 109.47111 * 59.99824 * 3 2 1 32 32 H 1.09003 * 109.47291 * 300.00078 * 3 2 1 33 33 H 1.09006 * 109.46932 * 60.00019 * 4 3 2 34 34 H 1.09003 * 109.47260 * 300.00401 * 4 3 2 35 35 H 0.97003 * 120.00128 * 184.92725 * 9 8 6 36 36 H 1.09006 * 109.47217 * 63.21859 * 18 16 14 37 37 H 1.09000 * 109.47351 * 303.22478 * 18 16 14 38 38 H 0.96698 * 114.00206 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.00050 * 359.97438 * 21 20 16 40 40 H 1.07991 * 120.00363 * 180.26917 * 22 21 20 41 41 H 1.07997 * 119.99396 * 179.83366 * 23 22 21 42 42 H 1.08002 * 119.99738 * 179.97438 * 24 23 22 43 43 H 1.08007 * 120.00046 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2874 3.4693 -1.1875 7 1 3.5110 3.5127 -1.9370 8 6 5.5182 4.0680 -1.4268 9 7 6.5559 3.7566 -0.6830 10 14 5.6979 5.3151 -2.8058 11 1 5.4174 6.6761 -2.2820 12 1 7.0826 5.2662 -3.3401 13 1 4.7368 4.9947 -3.8914 14 6 4.2825 3.4596 1.1670 15 8 4.1782 2.8583 2.2152 16 6 4.6628 4.9179 1.1695 17 1 5.4632 5.0859 0.4488 18 6 3.4462 5.7629 0.7866 19 8 3.8250 7.1389 0.7158 20 6 5.1349 5.3116 2.5454 21 6 4.2846 5.1911 3.6286 22 6 4.7191 5.5481 4.8914 23 6 6.0010 6.0341 5.0696 24 6 6.8495 6.1594 3.9855 25 6 6.4164 5.7983 2.7235 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 7.3965 4.2256 -0.8026 36 1 2.6666 5.6389 1.5383 37 1 3.0698 5.4392 -0.1838 38 1 3.1013 7.7344 0.4777 39 1 3.2818 4.8152 3.4888 40 1 4.0564 5.4499 5.7384 41 1 6.3395 6.3155 6.0557 42 1 7.8508 6.5396 4.1246 43 1 7.0796 5.8958 1.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181923707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -87.568310 kcal Electronic energy + Delta-G solvation = -24429.564212 eV Core-core repulsion = 21052.611004 eV Total energy + Delta-G solvation = -3376.953207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20439 -39.56446 -37.68223 -36.99365 -35.82821 -33.90975 -33.28178 -31.68991 -30.27173 -29.13053 -26.80912 -25.15278 -24.19942 -23.32498 -22.31127 -21.85008 -20.98255 -19.01547 -17.90088 -17.74588 -17.10205 -16.97842 -16.33894 -16.21180 -15.91296 -15.73477 -15.31629 -15.22041 -14.70401 -14.38274 -14.11286 -14.00081 -13.88488 -13.46280 -13.40613 -13.29911 -13.13136 -13.01551 -12.85640 -12.25909 -12.17090 -12.16622 -12.00751 -11.86082 -11.81583 -11.60268 -11.41052 -10.87550 -10.71314 -10.22556 -9.67718 -9.46313 -9.25865 -8.34580 -6.27471 0.58956 0.62369 1.41643 1.48430 1.53990 2.08526 2.29467 2.84400 2.98340 3.13772 3.59580 3.93593 4.05736 4.07874 4.17199 4.22649 4.30243 4.31464 4.36867 4.44445 4.47132 4.69096 4.70917 4.74405 4.81295 4.85161 4.93325 4.98809 5.00319 5.13050 5.14798 5.23669 5.31247 5.35062 5.41002 5.44418 5.49405 5.66199 5.67649 5.93234 6.01683 6.24504 6.66728 6.94542 6.97496 7.60873 8.06035 8.68301 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.007173 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.672226 B = 3902.441303 C = 5377.824886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.110 3.890 5 N -0.462 5.462 6 C -0.350 4.350 7 H 0.091 0.909 8 C 0.017 3.983 9 N -0.888 5.888 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.252 1.252 14 C 0.517 3.483 15 O -0.625 6.625 16 C -0.068 4.068 17 H 0.114 0.886 18 C 0.106 3.894 19 O -0.579 6.579 20 C -0.062 4.062 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.271 0.729 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.393 0.607 39 H 0.104 0.896 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 3.560 2.638 8.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.013 4.013 5 N -0.181 5.181 6 C -0.478 4.478 7 H 0.109 0.891 8 C -0.186 4.186 9 N -0.524 5.524 10 Si 0.781 3.219 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.176 1.176 14 C 0.307 3.693 15 O -0.512 6.512 16 C -0.090 4.090 17 H 0.132 0.868 18 C 0.028 3.972 19 O -0.386 6.386 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.242 0.758 39 H 0.122 0.878 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.161 0.839 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.020 2.958 3.241 7.449 hybrid contribution 0.115 0.437 -1.006 1.103 sum -5.905 3.395 2.235 7.168 Atomic orbital electron populations 1.21718 0.94342 1.02302 1.01802 1.21436 0.97014 0.95028 1.02033 1.21768 0.94387 0.98056 1.00971 1.21506 0.94761 0.84933 1.00121 1.43469 1.59258 1.10374 1.05027 1.19514 0.97787 1.35008 0.95441 0.89134 1.26263 0.93947 0.99249 0.99180 1.70120 1.01711 1.38336 1.42228 0.85436 0.77874 0.79449 0.79098 1.18979 1.21199 1.17563 1.20256 0.77170 0.88785 0.83054 1.90473 1.58302 1.69282 1.33126 1.20335 1.00878 0.91762 0.95976 0.86844 1.21808 0.94049 0.81298 1.00053 1.86456 1.41452 1.17262 1.93478 1.19658 0.94603 0.97274 0.94681 1.20953 0.99385 0.98771 0.93245 1.21380 0.97324 0.99530 0.96570 1.21402 0.93615 1.00055 0.99580 1.21335 1.00755 1.00555 0.91982 1.21116 0.95322 1.00400 0.98168 0.93214 0.92344 0.91250 0.91239 0.92599 0.94082 0.91843 0.91683 0.94199 0.91888 0.94053 0.91872 0.75755 0.87809 0.83889 0.82878 0.83903 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.12 -3.31 5.93 30.60 0.18 -3.12 16 3 C -0.11 -4.07 5.54 30.59 0.17 -3.90 16 4 C 0.11 4.87 5.42 86.38 0.47 5.34 16 5 N -0.46 -23.09 2.42 -635.54 -1.54 -24.63 16 6 C -0.35 -17.18 7.39 84.04 0.62 -16.56 16 7 H 0.09 4.21 7.88 -2.91 -0.02 4.19 16 8 C 0.02 0.86 3.48 84.93 0.30 1.16 16 9 N -0.89 -47.90 11.51 21.66 0.25 -47.65 16 10 Si 0.96 39.11 29.59 68.60 2.03 41.14 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 14 C 0.52 27.02 6.17 87.66 0.54 27.56 16 15 O -0.63 -35.23 14.31 -3.06 -0.04 -35.27 16 16 C -0.07 -3.27 1.75 -12.29 -0.02 -3.29 16 17 H 0.11 5.93 4.11 -2.38 -0.01 5.92 16 18 C 0.11 4.29 6.20 71.98 0.45 4.73 16 19 O -0.58 -21.08 13.37 -148.98 -1.99 -23.08 16 20 C -0.06 -2.80 4.24 -19.87 -0.08 -2.88 16 21 C -0.11 -4.36 7.81 22.27 0.17 -4.19 16 22 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 23 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 25 C -0.13 -5.58 9.67 22.27 0.22 -5.37 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.80 8.04 -2.38 -0.02 2.78 16 34 H 0.04 1.90 7.35 -2.39 -0.02 1.89 16 35 H 0.27 14.01 8.32 -92.71 -0.77 13.24 16 36 H 0.04 1.57 7.27 -2.38 -0.02 1.56 16 37 H 0.06 2.56 6.76 -2.39 -0.02 2.54 16 38 H 0.39 9.56 9.12 -74.06 -0.68 8.88 16 39 H 0.10 4.38 7.21 -2.91 -0.02 4.36 16 40 H 0.14 3.82 8.06 -2.92 -0.02 3.80 16 41 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 42 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.10 4.47 7.95 -2.91 -0.02 4.45 16 Total: -1.00 -66.42 351.36 3.42 -63.00 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.32 Total: 41.63 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.39 Total: -15.15 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.29 Total: -72.28 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -2.04 Total: -58.35 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -66.42 3.42 -63.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181923707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.569 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds