Wall clock time and date at job start Tue Mar 31 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46666 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46789 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00078 * 263.71392 * 5 4 3 7 7 H 1.08004 * 120.00390 * 140.96702 * 6 5 4 8 8 C 1.38947 * 119.99901 * 320.96261 * 6 5 4 9 9 N 1.31411 * 119.99954 * 341.37382 * 8 6 5 10 10 Si 1.86805 * 120.00225 * 161.36978 * 8 6 5 11 11 H 1.48500 * 109.46568 * 60.00193 * 10 8 6 12 12 H 1.48502 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47063 * 300.00357 * 10 8 6 14 14 C 1.34782 * 120.00350 * 83.70920 * 5 4 3 15 15 O 1.21298 * 119.99648 * 3.61206 * 14 5 4 16 16 C 1.50695 * 120.00164 * 183.61215 * 14 5 4 17 17 H 1.08995 * 109.47518 * 331.70426 * 16 14 5 18 18 C 1.53003 * 109.47130 * 211.70569 * 16 14 5 19 19 O 1.42906 * 109.46942 * 65.25138 * 18 16 14 20 20 C 1.50700 * 109.47447 * 91.70975 * 16 14 5 21 21 C 1.38240 * 120.00055 * 240.00133 * 20 16 14 22 22 C 1.38231 * 119.99999 * 179.97438 * 21 20 16 23 23 C 1.38233 * 120.00047 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00281 * 359.97438 * 23 22 21 25 25 C 1.38240 * 119.99872 * 59.97152 * 20 16 14 26 26 H 1.08996 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46530 * 299.99991 * 1 2 3 28 28 H 1.08999 * 109.46882 * 59.99768 * 1 2 3 29 29 H 1.09001 * 109.46750 * 240.00491 * 2 1 3 30 30 H 1.08996 * 109.46973 * 120.00756 * 2 1 3 31 31 H 1.09001 * 109.46886 * 60.00574 * 3 2 1 32 32 H 1.08993 * 109.47071 * 300.00171 * 3 2 1 33 33 H 1.09001 * 109.47070 * 60.00600 * 4 3 2 34 34 H 1.08993 * 109.47444 * 299.99856 * 4 3 2 35 35 H 0.97000 * 120.00173 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.47300 * 185.25637 * 18 16 14 37 37 H 1.09005 * 109.46880 * 305.25962 * 18 16 14 38 38 H 0.96699 * 113.99570 * 180.02562 * 19 18 16 39 39 H 1.07995 * 119.99601 * 359.97438 * 21 20 16 40 40 H 1.07997 * 119.99565 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.00272 * 179.71771 * 23 22 21 42 42 H 1.07999 * 120.00494 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00230 * 0.02562 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.4091 3.4272 -1.1800 7 1 4.1675 4.4665 -1.3476 8 6 5.0752 2.7020 -2.1603 9 7 5.6892 1.5833 -1.8467 10 14 5.0979 3.3173 -3.9239 11 1 5.7367 4.6570 -3.9725 12 1 5.8697 2.3706 -4.7685 13 1 3.7061 3.4137 -4.4325 14 6 4.1631 3.5009 1.1605 15 8 3.9155 2.9466 2.2106 16 6 4.5875 4.9469 1.1534 17 1 5.2219 5.1351 0.2874 18 6 5.3668 5.2559 2.4333 19 8 6.5855 4.5095 2.4409 20 6 3.3672 5.8283 1.0833 21 6 3.2038 6.6994 0.0224 22 6 2.0842 7.5076 -0.0422 23 6 1.1277 7.4443 0.9538 24 6 1.2905 6.5726 2.0141 25 6 2.4109 5.7654 2.0796 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9330 0.9287 -0.8909 34 1 3.9338 0.9285 0.8890 35 1 6.1539 1.0768 -2.5311 36 1 5.5931 6.3214 2.4726 37 1 4.7663 4.9797 3.3000 38 1 7.1316 4.6562 3.2253 39 1 3.9508 6.7485 -0.7559 40 1 1.9568 8.1884 -0.8708 41 1 0.2552 8.0790 0.9057 42 1 0.5435 6.5234 2.7925 43 1 2.5385 5.0849 2.9084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181923708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:30 Heat of formation + Delta-G solvation = -74.004935 kcal Electronic energy + Delta-G solvation = -24298.418598 eV Core-core repulsion = 20922.053543 eV Total energy + Delta-G solvation = -3376.365055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.58587 -38.06152 -36.30407 -35.10966 -33.90587 -32.64576 -31.39920 -30.56119 -28.67150 -27.83062 -24.84842 -23.92498 -22.52962 -22.15122 -20.91859 -20.20514 -18.88182 -17.29061 -16.74262 -16.16685 -16.01195 -14.86248 -14.70629 -14.61529 -14.37421 -14.27871 -13.83645 -13.62099 -13.20567 -13.09053 -12.90074 -12.36209 -12.26061 -12.14449 -11.88885 -11.81768 -11.35710 -11.19512 -10.98204 -10.92022 -10.61744 -10.52872 -10.47887 -10.37662 -10.30300 -10.14149 -9.66933 -9.44200 -9.04360 -8.68038 -8.57862 -8.05783 -7.38426 -6.31057 -4.02104 1.66638 1.74027 3.14277 3.22421 3.24071 3.93257 4.09325 4.17012 4.63740 4.88406 5.01980 5.23677 5.25254 5.39394 5.51518 5.53389 5.59557 5.66655 5.70038 5.85651 5.89764 5.91229 5.99080 6.11522 6.27138 6.29849 6.33970 6.36738 6.44018 6.51418 6.58115 6.66924 6.77338 6.79974 6.81247 6.88522 7.08240 7.19104 7.33431 7.42342 7.52409 8.05335 8.14141 8.43346 9.13584 9.60149 10.03788 10.71425 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.007036 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.066888 B = 3978.375380 C = 4558.082300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.121 3.879 5 N -0.435 5.435 6 C -0.338 4.338 7 H 0.086 0.914 8 C 0.045 3.955 9 N -0.857 5.857 10 Si 0.910 3.090 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.495 3.505 15 O -0.602 6.602 16 C -0.063 4.063 17 H 0.110 0.890 18 C 0.101 3.899 19 O -0.559 6.559 20 C -0.054 4.054 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.107 4.107 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.370 0.630 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 7.321 3.319 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.002 4.002 5 N -0.151 5.151 6 C -0.466 4.466 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.493 5.493 10 Si 0.736 3.264 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.283 3.717 15 O -0.488 6.488 16 C -0.084 4.084 17 H 0.128 0.872 18 C 0.023 3.977 19 O -0.363 6.363 20 C -0.055 4.055 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.125 4.125 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.215 0.785 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.981 6.644 3.122 9.470 hybrid contribution 0.250 0.460 -0.587 0.786 sum -5.732 7.105 2.536 9.474 Atomic orbital electron populations 1.21754 0.96684 1.00615 1.01440 1.21430 0.94922 0.97797 1.01576 1.21916 0.98079 0.95401 1.01236 1.21306 0.90727 0.85081 1.03117 1.43328 1.55082 1.11705 1.05018 1.19315 1.36949 0.97584 0.92750 0.89594 1.25375 0.94082 0.96430 1.00206 1.69947 1.29436 1.15968 1.33959 0.86279 0.78504 0.78844 0.82747 1.19697 1.20902 1.19814 1.19845 0.80259 0.87712 0.83866 1.90485 1.56268 1.70482 1.31581 1.20066 0.94401 0.93992 0.99971 0.87195 1.21937 0.85588 0.93016 0.97174 1.86627 1.33347 1.70064 1.46274 1.19477 0.95571 0.95624 0.94831 1.21135 0.98090 0.95453 0.97596 1.21056 0.94582 0.99761 0.98795 1.21049 0.99081 0.99523 0.95067 1.21065 0.97712 0.96927 0.98539 1.21189 0.93704 0.98505 0.99130 0.93444 0.93125 0.93082 0.92284 0.92415 0.92970 0.92480 0.88250 0.93108 0.92085 0.94218 0.92948 0.78484 0.85741 0.86377 0.86676 0.86519 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.08 5.93 -26.73 -0.16 -2.24 16 3 C -0.13 -2.70 5.49 -26.73 -0.15 -2.84 16 4 C 0.12 3.00 4.89 -4.04 -0.02 2.98 16 5 N -0.43 -11.23 2.53 -114.81 -0.29 -11.52 16 6 C -0.34 -8.69 8.16 -14.93 -0.12 -8.81 16 7 H 0.09 2.11 6.50 -52.48 -0.34 1.77 16 8 C 0.05 1.16 4.95 -17.47 -0.09 1.08 16 9 N -0.86 -23.16 11.49 55.50 0.64 -22.52 16 10 Si 0.91 19.66 29.59 -169.99 -5.03 14.63 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 14 C 0.49 12.37 6.02 -10.99 -0.07 12.30 16 15 O -0.60 -16.10 15.41 5.54 0.09 -16.01 16 16 C -0.06 -1.32 1.90 -92.92 -0.18 -1.50 16 17 H 0.11 2.44 6.35 -51.93 -0.33 2.11 16 18 C 0.10 1.86 5.89 37.16 0.22 2.08 16 19 O -0.56 -10.88 13.42 -35.23 -0.47 -11.35 16 20 C -0.05 -1.00 4.77 -104.62 -0.50 -1.50 16 21 C -0.10 -1.74 9.21 -39.58 -0.36 -2.10 16 22 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 23 C -0.13 -1.76 10.05 -39.59 -0.40 -2.16 16 24 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.11 -1.86 8.87 -39.58 -0.35 -2.21 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.10 2.58 5.63 -51.93 -0.29 2.29 16 34 H 0.05 1.32 7.57 -51.93 -0.39 0.93 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 38 H 0.37 4.96 9.12 45.56 0.42 5.37 16 39 H 0.12 1.98 7.84 -52.49 -0.41 1.56 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.13 2.29 7.30 -52.49 -0.38 1.91 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -31.33 354.92 -8.21 -39.54 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.89 Total: 13.02 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.60 Total: -11.13 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.35 Total: -34.04 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.39 Total: -27.37 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.33 -8.21 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181923708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.462 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds