Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47236 * 2 1 4 4 C 1.52995 * 109.47074 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46960 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99805 * 269.99985 * 5 4 3 7 7 H 1.07998 * 119.99936 * 140.80442 * 6 5 4 8 8 C 1.38957 * 120.00133 * 320.80478 * 6 5 4 9 9 N 1.31405 * 119.99764 * 164.22333 * 8 6 5 10 10 Si 1.86796 * 119.99726 * 344.22006 * 8 6 5 11 11 H 1.48506 * 109.46883 * 95.45511 * 10 8 6 12 12 H 1.48497 * 109.47288 * 215.45127 * 10 8 6 13 13 H 1.48501 * 109.47652 * 335.45658 * 10 8 6 14 14 C 1.34767 * 119.99894 * 89.99878 * 5 4 3 15 15 O 1.21294 * 120.00445 * 3.77627 * 14 5 4 16 16 C 1.50705 * 119.99806 * 183.77394 * 14 5 4 17 17 C 1.53004 * 109.47028 * 191.80150 * 16 14 5 18 18 O 1.42894 * 109.47056 * 311.80192 * 16 14 5 19 19 C 1.50699 * 109.47069 * 71.80384 * 16 14 5 20 20 C 1.38239 * 119.99786 * 225.91059 * 19 16 14 21 21 C 1.38232 * 119.99845 * 180.02562 * 20 19 16 22 22 C 1.38246 * 120.00016 * 359.95376 * 21 20 19 23 23 C 1.38230 * 119.99870 * 0.27636 * 22 21 20 24 24 C 1.38233 * 119.99879 * 359.53638 * 23 22 21 25 25 H 1.08990 * 109.47808 * 59.99693 * 1 2 3 26 26 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47017 * 299.99799 * 1 2 3 28 28 H 1.09000 * 109.47017 * 240.00201 * 2 1 3 29 29 H 1.09004 * 109.47623 * 120.00159 * 2 1 3 30 30 H 1.09000 * 109.46954 * 60.00162 * 3 2 1 31 31 H 1.08996 * 109.46643 * 300.00504 * 3 2 1 32 32 H 1.09000 * 109.47390 * 60.00072 * 4 3 2 33 33 H 1.09004 * 109.47412 * 299.99931 * 4 3 2 34 34 H 0.97005 * 119.99676 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47039 * 295.57481 * 17 16 14 36 36 H 1.08992 * 109.47106 * 55.57657 * 17 16 14 37 37 H 1.08999 * 109.47046 * 175.58126 * 17 16 14 38 38 H 0.96698 * 114.00051 * 72.00445 * 18 16 14 39 39 H 1.07993 * 120.00327 * 359.97438 * 20 19 16 40 40 H 1.07996 * 120.00292 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99609 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.99873 * 179.72292 * 23 22 21 43 43 H 1.08004 * 119.99914 * 180.20896 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2863 3.4707 -1.1871 7 1 4.0282 4.5142 -1.2916 8 6 4.8494 2.7839 -2.2557 9 7 4.7871 3.2888 -3.4673 10 14 5.6950 1.1430 -1.9699 11 1 4.7375 0.0396 -2.2369 12 1 6.8591 1.0201 -2.8836 13 1 6.1604 1.0644 -0.5619 14 6 4.2834 3.4584 1.1674 15 8 4.1475 2.8648 2.2164 16 6 4.7039 4.9056 1.1695 17 6 5.1742 5.2980 2.5716 18 8 5.7722 5.0925 0.2390 19 6 3.5346 5.7690 0.7719 20 6 3.7051 6.7786 -0.1570 21 6 2.6326 7.5709 -0.5213 22 6 1.3893 7.3532 0.0426 23 6 1.2199 6.3468 0.9749 24 6 2.2915 5.5519 1.3363 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.1799 2.8091 -4.2134 35 1 4.3379 5.2305 3.2674 36 1 5.9679 4.6226 2.8908 37 1 5.5517 6.3204 2.5553 38 1 5.5002 5.0414 -0.6875 39 1 4.6764 6.9487 -0.5974 40 1 2.7659 8.3599 -1.2466 41 1 0.5513 7.9721 -0.2424 42 1 0.2496 6.1796 1.4187 43 1 2.1584 4.7634 2.0623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182931618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -57.185277 kcal Electronic energy + Delta-G solvation = -24967.982813 eV Core-core repulsion = 21592.347113 eV Total energy + Delta-G solvation = -3375.635700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09928 -38.24485 -36.07994 -35.58051 -34.00475 -31.98994 -31.56190 -30.40398 -28.82979 -28.72788 -25.18909 -24.26460 -22.79191 -22.13492 -20.97951 -20.71384 -18.93430 -17.89973 -17.19939 -16.26070 -15.46682 -15.35863 -14.87701 -14.53160 -14.31818 -14.03286 -13.90179 -13.30685 -13.19678 -13.03914 -12.82598 -12.69113 -12.22313 -12.08598 -11.97111 -11.82697 -11.66981 -11.43419 -11.35025 -11.16821 -10.74348 -10.68240 -10.64638 -10.59196 -10.34899 -10.15075 -10.00952 -9.76323 -9.19566 -8.64778 -8.51082 -8.12495 -7.80162 -6.56802 -4.23383 1.73000 1.80795 3.00399 3.17559 3.26887 3.56253 4.04785 4.13991 4.29290 4.78214 5.06636 5.12115 5.31498 5.32818 5.34775 5.38804 5.48574 5.50725 5.71212 5.77379 5.83190 5.89871 5.98657 6.07663 6.11782 6.18147 6.19176 6.26172 6.30489 6.36750 6.40765 6.46369 6.46804 6.63122 6.72938 6.84272 6.86635 6.87418 7.02775 7.29193 7.38034 7.91163 8.08309 8.51355 8.81411 9.22442 9.56515 10.51002 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.007791 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.260375 B = 3592.881120 C = 4266.095084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.124 4.124 4 C 0.101 3.899 5 N -0.456 5.456 6 C -0.357 4.357 7 H 0.111 0.889 8 C 0.071 3.929 9 N -0.857 5.857 10 Si 0.886 3.114 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.261 1.261 14 C 0.471 3.529 15 O -0.590 6.590 16 C 0.177 3.823 17 C -0.115 4.115 18 O -0.557 6.557 19 C -0.090 4.090 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.277 0.723 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.399 0.601 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 2.936 4.458 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.022 4.022 5 N -0.176 5.176 6 C -0.484 4.484 7 H 0.128 0.872 8 C -0.138 4.138 9 N -0.492 5.492 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.259 3.741 15 O -0.475 6.475 16 C 0.133 3.867 17 C -0.173 4.173 18 O -0.373 6.373 19 C -0.091 4.091 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.124 4.124 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.258 0.742 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.143 2.687 5.240 7.818 hybrid contribution -0.017 -1.000 -0.893 1.340 sum -5.160 1.687 4.347 6.955 Atomic orbital electron populations 1.21732 0.96106 1.00900 1.01742 1.21487 0.95636 0.97448 1.01616 1.21832 0.95911 0.95978 1.02520 1.21648 0.93993 0.85593 1.00931 1.43671 1.56608 1.11628 1.05688 1.19070 1.42934 0.98318 0.88059 0.87211 1.25339 0.95193 0.98556 0.94701 1.69703 1.40979 1.39757 0.98725 0.86772 0.79238 0.83179 0.79354 1.20245 1.21608 1.18502 1.20911 0.79758 0.89673 0.83788 1.90536 1.57066 1.68101 1.31812 1.19849 0.85476 0.89972 0.91420 1.21516 1.02043 1.01160 0.92534 1.86376 1.34857 1.94252 1.21776 1.20328 0.95109 0.96512 0.97114 1.20978 0.99465 0.94782 0.96656 1.21045 0.92965 0.99800 0.99871 1.21051 0.97162 0.98509 0.97713 1.21003 0.98339 0.96187 0.98472 1.20969 0.92341 0.99104 0.99938 0.92772 0.93251 0.92930 0.92293 0.92264 0.92138 0.91205 0.92137 0.91225 0.91262 0.91120 0.91506 0.92069 0.74249 0.85420 0.86312 0.86651 0.86569 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.12 -2.38 5.54 -26.73 -0.15 -2.53 16 4 C 0.10 2.23 4.12 -4.04 -0.02 2.22 16 5 N -0.46 -10.79 2.18 -114.81 -0.25 -11.04 16 6 C -0.36 -8.81 7.01 -14.93 -0.10 -8.91 16 7 H 0.11 2.77 4.68 -52.49 -0.25 2.52 16 8 C 0.07 1.79 5.40 -17.47 -0.09 1.69 16 9 N -0.86 -22.43 13.96 55.50 0.77 -21.65 16 10 Si 0.89 20.54 24.71 -169.99 -4.20 16.34 16 11 H -0.28 -6.14 6.78 56.52 0.38 -5.75 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -6.29 7.01 56.52 0.40 -5.89 16 14 C 0.47 10.98 5.69 -10.99 -0.06 10.92 16 15 O -0.59 -14.59 15.61 5.55 0.09 -14.50 16 16 C 0.18 3.66 0.92 -92.92 -0.09 3.57 16 17 C -0.11 -2.10 8.11 37.16 0.30 -1.80 16 18 O -0.56 -12.06 11.69 -35.23 -0.41 -12.47 16 19 C -0.09 -1.70 3.59 -104.62 -0.38 -2.07 16 20 C -0.10 -1.77 8.24 -39.58 -0.33 -2.09 16 21 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 24 C -0.11 -1.88 8.97 -39.58 -0.36 -2.24 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.37 2.99 -51.93 -0.16 1.21 16 33 H 0.07 1.55 7.37 -51.93 -0.38 1.17 16 34 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 36 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 8.87 4.56 45.56 0.21 9.07 16 39 H 0.13 2.17 6.84 -52.49 -0.36 1.82 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.12 2.20 7.61 -52.48 -0.40 1.80 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -27.88 340.36 -7.10 -34.98 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -5.98 Total: 14.93 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.25 Total: -11.71 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.52 Total: -32.70 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.33 Total: -26.98 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.20 Total: 16.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.88 -7.10 -34.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182931618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.203 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds