Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47236 * 2 1 4 4 C 1.52995 * 109.47074 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46960 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99805 * 269.99985 * 5 4 3 7 7 H 1.07998 * 119.99936 * 140.80442 * 6 5 4 8 8 C 1.38957 * 120.00133 * 320.80478 * 6 5 4 9 9 N 1.31405 * 119.99764 * 164.22333 * 8 6 5 10 10 Si 1.86796 * 119.99726 * 344.22006 * 8 6 5 11 11 H 1.48506 * 109.46883 * 95.45511 * 10 8 6 12 12 H 1.48497 * 109.47288 * 215.45127 * 10 8 6 13 13 H 1.48501 * 109.47652 * 335.45658 * 10 8 6 14 14 C 1.34767 * 119.99894 * 89.99878 * 5 4 3 15 15 O 1.21294 * 120.00445 * 3.77627 * 14 5 4 16 16 C 1.50705 * 119.99806 * 183.77394 * 14 5 4 17 17 C 1.53004 * 109.47028 * 191.80150 * 16 14 5 18 18 O 1.42894 * 109.47056 * 311.80192 * 16 14 5 19 19 C 1.50699 * 109.47069 * 71.80384 * 16 14 5 20 20 C 1.38239 * 119.99786 * 225.91059 * 19 16 14 21 21 C 1.38232 * 119.99845 * 180.02562 * 20 19 16 22 22 C 1.38246 * 120.00016 * 359.95376 * 21 20 19 23 23 C 1.38230 * 119.99870 * 0.27636 * 22 21 20 24 24 C 1.38233 * 119.99879 * 359.53638 * 23 22 21 25 25 H 1.08990 * 109.47808 * 59.99693 * 1 2 3 26 26 H 1.09003 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47017 * 299.99799 * 1 2 3 28 28 H 1.09000 * 109.47017 * 240.00201 * 2 1 3 29 29 H 1.09004 * 109.47623 * 120.00159 * 2 1 3 30 30 H 1.09000 * 109.46954 * 60.00162 * 3 2 1 31 31 H 1.08996 * 109.46643 * 300.00504 * 3 2 1 32 32 H 1.09000 * 109.47390 * 60.00072 * 4 3 2 33 33 H 1.09004 * 109.47412 * 299.99931 * 4 3 2 34 34 H 0.97005 * 119.99676 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47039 * 295.57481 * 17 16 14 36 36 H 1.08992 * 109.47106 * 55.57657 * 17 16 14 37 37 H 1.08999 * 109.47046 * 175.58126 * 17 16 14 38 38 H 0.96698 * 114.00051 * 72.00445 * 18 16 14 39 39 H 1.07993 * 120.00327 * 359.97438 * 20 19 16 40 40 H 1.07996 * 120.00292 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99609 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.99873 * 179.72292 * 23 22 21 43 43 H 1.08004 * 119.99914 * 180.20896 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2863 3.4707 -1.1871 7 1 4.0282 4.5142 -1.2916 8 6 4.8494 2.7839 -2.2557 9 7 4.7871 3.2888 -3.4673 10 14 5.6950 1.1430 -1.9699 11 1 4.7375 0.0396 -2.2369 12 1 6.8591 1.0201 -2.8836 13 1 6.1604 1.0644 -0.5619 14 6 4.2834 3.4584 1.1674 15 8 4.1475 2.8648 2.2164 16 6 4.7039 4.9056 1.1695 17 6 5.1742 5.2980 2.5716 18 8 5.7722 5.0925 0.2390 19 6 3.5346 5.7690 0.7719 20 6 3.7051 6.7786 -0.1570 21 6 2.6326 7.5709 -0.5213 22 6 1.3893 7.3532 0.0426 23 6 1.2199 6.3468 0.9749 24 6 2.2915 5.5519 1.3363 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9288 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.1799 2.8091 -4.2134 35 1 4.3379 5.2305 3.2674 36 1 5.9679 4.6226 2.8908 37 1 5.5517 6.3204 2.5553 38 1 5.5002 5.0414 -0.6875 39 1 4.6764 6.9487 -0.5974 40 1 2.7659 8.3599 -1.2466 41 1 0.5513 7.9721 -0.2424 42 1 0.2496 6.1796 1.4187 43 1 2.1584 4.7634 2.0623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182931618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -73.029965 kcal Electronic energy + Delta-G solvation = -24968.669890 eV Core-core repulsion = 21592.347113 eV Total energy + Delta-G solvation = -3376.322778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74181 -39.73601 -37.66061 -37.38157 -35.54615 -33.88399 -33.05644 -31.67688 -30.24991 -30.21570 -27.08016 -25.79688 -24.23830 -23.42575 -22.42046 -22.17831 -20.71925 -19.69504 -18.66885 -18.04473 -17.26123 -16.75953 -16.31668 -16.18614 -15.83291 -15.67552 -15.24885 -14.94354 -14.72794 -14.49726 -14.43324 -14.14827 -13.88018 -13.49077 -13.44637 -13.32425 -13.08693 -13.07636 -12.93437 -12.74410 -12.26691 -12.20283 -12.10002 -11.97265 -11.91189 -11.78763 -11.65286 -11.46400 -11.03121 -10.32414 -9.82522 -9.73358 -9.49509 -8.53068 -6.19753 0.44289 0.53462 1.13406 1.27844 1.37813 1.73906 2.13213 2.49109 2.85742 2.92186 3.49396 3.65166 3.84273 3.97887 4.03464 4.09914 4.17231 4.19544 4.27008 4.31081 4.32927 4.48199 4.64363 4.69426 4.71516 4.82068 4.83608 4.88500 4.91148 5.01691 5.07301 5.14161 5.17826 5.19843 5.30143 5.37911 5.45507 5.58793 5.63389 5.67887 5.96622 6.13623 6.18714 6.76655 6.87605 7.32406 7.68267 8.57250 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.007791 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.260375 B = 3592.881120 C = 4266.095084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.094 3.906 5 N -0.465 5.465 6 C -0.348 4.348 7 H 0.103 0.897 8 C 0.042 3.958 9 N -0.884 5.884 10 Si 0.923 3.077 11 H -0.260 1.260 12 H -0.286 1.286 13 H -0.279 1.279 14 C 0.463 3.537 15 O -0.610 6.610 16 C 0.173 3.827 17 C -0.111 4.111 18 O -0.564 6.564 19 C -0.107 4.107 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.281 0.719 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 3.388 4.372 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.029 4.029 5 N -0.185 5.185 6 C -0.475 4.475 7 H 0.120 0.880 8 C -0.164 4.164 9 N -0.520 5.520 10 Si 0.751 3.249 11 H -0.186 1.186 12 H -0.213 1.213 13 H -0.205 1.205 14 C 0.252 3.748 15 O -0.496 6.496 16 C 0.128 3.872 17 C -0.168 4.168 18 O -0.378 6.378 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.138 4.138 24 C -0.141 4.141 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.824 3.131 5.153 9.106 hybrid contribution 0.479 -1.082 -0.819 1.439 sum -6.345 2.049 4.334 7.952 Atomic orbital electron populations 1.21698 0.93933 1.02488 1.01901 1.21494 0.97537 0.94884 1.02051 1.21719 0.93713 0.98255 1.01393 1.21780 0.95988 0.84818 1.00290 1.43822 1.56895 1.12188 1.05561 1.19044 1.42165 0.98130 0.88153 0.87967 1.25705 0.95689 1.00413 0.94635 1.69735 1.42202 1.40869 0.99208 0.86187 0.78940 0.81752 0.77996 1.18599 1.21285 1.20459 1.21493 0.79095 0.90835 0.83349 1.90504 1.57891 1.68894 1.32315 1.19977 0.86254 0.88746 0.92179 1.21521 1.01939 1.02032 0.91350 1.86361 1.35644 1.94213 1.21586 1.20180 0.94743 0.97244 0.98625 1.21078 1.00312 0.95294 0.96802 1.21416 0.92634 0.99727 0.99902 1.21494 0.97891 0.98016 0.96339 1.21343 0.98672 0.95551 0.98271 1.20982 0.92963 0.99774 1.00420 0.92847 0.90960 0.92577 0.92168 0.91538 0.92845 0.92565 0.92567 0.91876 0.90895 0.90478 0.92591 0.89994 0.74841 0.85815 0.83615 0.82953 0.83850 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.12 -3.68 5.93 30.59 0.18 -3.50 16 3 C -0.11 -4.29 5.54 30.59 0.17 -4.12 16 4 C 0.09 4.16 4.12 86.38 0.36 4.52 16 5 N -0.46 -22.33 2.18 -635.53 -1.39 -23.71 16 6 C -0.35 -17.38 7.01 84.04 0.59 -16.79 16 7 H 0.10 5.25 4.68 -2.91 -0.01 5.24 16 8 C 0.04 2.11 5.40 84.93 0.46 2.57 16 9 N -0.88 -46.38 13.96 21.66 0.30 -46.07 16 10 Si 0.92 42.26 24.71 68.60 1.69 43.95 16 11 H -0.26 -11.14 6.78 99.48 0.67 -10.47 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.28 -13.53 7.01 99.48 0.70 -12.83 16 14 C 0.46 22.04 5.69 87.66 0.50 22.53 16 15 O -0.61 -30.74 15.61 -3.07 -0.05 -30.79 16 16 C 0.17 7.22 0.92 -12.28 -0.01 7.21 16 17 C -0.11 -4.07 8.11 71.98 0.58 -3.49 16 18 O -0.56 -24.90 11.69 -148.98 -1.74 -26.64 16 19 C -0.11 -4.04 3.59 -19.87 -0.07 -4.11 16 20 C -0.12 -4.02 8.24 22.27 0.18 -3.83 16 21 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 22 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 23 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.12 -4.34 8.97 22.27 0.20 -4.14 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.53 2.99 -2.39 -0.01 2.52 16 33 H 0.06 2.85 7.37 -2.38 -0.02 2.83 16 34 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 35 H 0.08 2.68 7.94 -2.38 -0.02 2.67 16 36 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.39 18.02 4.56 -74.06 -0.34 17.68 16 39 H 0.12 4.24 6.84 -2.91 -0.02 4.22 16 40 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.11 3.94 7.61 -2.91 -0.02 3.92 16 Total: -1.00 -59.67 340.36 3.97 -55.70 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: 0.63 Total: 42.74 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.52 Total: -15.18 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.08 Total: -69.79 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.79 Total: -57.43 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.69 Total: 43.95 kcal Total: -59.67 3.97 -55.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182931618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.326 kcal (2) G-P(sol) polarization free energy of solvation -59.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds