Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47244 * 2 1 4 4 C 1.52994 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47071 * 180.02562 * 4 3 2 6 6 C 1.37092 * 120.00242 * 90.00228 * 5 4 3 7 7 H 1.08007 * 119.99874 * 222.78361 * 6 5 4 8 8 C 1.38949 * 120.00227 * 43.05264 * 6 5 4 9 9 N 1.31412 * 120.00000 * 6.34741 * 8 6 5 10 10 Si 1.86800 * 119.99985 * 186.35053 * 8 6 5 11 11 H 1.48497 * 109.47218 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47369 * 120.00074 * 10 8 6 13 13 H 1.48501 * 109.47177 * 240.00163 * 10 8 6 14 14 C 1.34779 * 119.99727 * 269.99941 * 5 4 3 15 15 O 1.21295 * 120.00094 * 5.64304 * 14 5 4 16 16 C 1.50692 * 119.99982 * 185.64304 * 14 5 4 17 17 C 1.53006 * 109.47339 * 166.02086 * 16 14 5 18 18 O 1.42901 * 109.47194 * 46.02084 * 16 14 5 19 19 C 1.50702 * 109.47439 * 286.01915 * 16 14 5 20 20 C 1.38239 * 119.99713 * 328.87707 * 19 16 14 21 21 C 1.38225 * 119.99852 * 179.78383 * 20 19 16 22 22 C 1.38244 * 120.00050 * 0.44068 * 21 20 19 23 23 C 1.38234 * 120.00050 * 359.81023 * 22 21 20 24 24 C 1.38234 * 120.00247 * 149.14495 * 19 16 14 25 25 H 1.09008 * 109.47246 * 59.99687 * 1 2 3 26 26 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47438 * 299.99899 * 1 2 3 28 28 H 1.09000 * 109.46993 * 240.00360 * 2 1 3 29 29 H 1.08995 * 109.47251 * 119.99978 * 2 1 3 30 30 H 1.09003 * 109.46821 * 59.99723 * 3 2 1 31 31 H 1.08995 * 109.46978 * 300.00144 * 3 2 1 32 32 H 1.08993 * 109.47606 * 60.00133 * 4 3 2 33 33 H 1.09008 * 109.47246 * 300.00313 * 4 3 2 34 34 H 0.96997 * 119.99576 * 184.99874 * 9 8 6 35 35 H 1.08992 * 109.46658 * 59.99647 * 17 16 14 36 36 H 1.08995 * 109.47051 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46468 * 299.99746 * 17 16 14 38 38 H 0.96706 * 114.00263 * 303.96309 * 18 16 14 39 39 H 1.07999 * 119.99844 * 359.97438 * 20 19 16 40 40 H 1.08003 * 120.00203 * 180.26782 * 21 20 19 41 41 H 1.08005 * 119.99795 * 179.83472 * 22 21 20 42 42 H 1.07993 * 120.00281 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99970 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2863 3.4697 1.1888 7 1 3.9754 4.4966 1.3134 8 6 4.9224 2.8052 2.2302 9 7 5.4164 1.6028 2.0379 10 14 5.0752 3.6211 3.9036 11 1 4.4424 4.9638 3.8594 12 1 4.3946 2.7860 4.9256 13 1 6.5108 3.7626 4.2561 14 6 4.2834 3.4594 -1.1657 15 8 3.9858 2.9265 -2.2139 16 6 4.9048 4.8323 -1.1683 17 6 5.3689 5.1794 -2.5843 18 8 6.0257 4.8494 -0.2820 19 6 3.8872 5.8453 -0.7107 20 6 2.5452 5.6446 -0.9748 21 6 1.6113 6.5715 -0.5512 22 6 2.0203 7.7037 0.1284 23 6 3.3628 7.9070 0.3879 24 6 4.2962 6.9779 -0.0319 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9287 -0.8890 33 1 3.9329 0.9288 0.8909 34 1 5.7955 1.1096 2.7821 35 1 4.5140 5.1663 -3.2602 36 1 5.8188 6.1722 -2.5860 37 1 6.1050 4.4468 -2.9151 38 1 5.8162 4.5791 0.6225 39 1 2.2261 4.7620 -1.5092 40 1 0.5624 6.4126 -0.7537 41 1 1.2908 8.4293 0.4570 42 1 3.6823 8.7917 0.9185 43 1 5.3451 7.1366 0.1709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182931620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -69.655324 kcal Electronic energy + Delta-G solvation = -24906.997252 eV Core-core repulsion = 21530.820810 eV Total energy + Delta-G solvation = -3376.176442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94672 -38.07901 -35.84531 -35.39619 -33.91807 -31.59256 -31.46286 -30.42832 -28.74697 -28.48199 -25.17355 -24.15222 -22.52598 -22.08275 -20.86594 -20.25644 -19.09699 -17.72063 -17.02254 -15.98786 -15.39676 -14.87191 -14.68453 -14.64828 -14.23534 -13.98291 -13.68453 -13.45932 -13.04743 -13.04012 -12.64172 -12.23645 -12.03546 -11.94631 -11.81652 -11.63780 -11.55413 -11.37635 -11.23227 -11.04965 -10.77547 -10.60788 -10.53980 -10.50647 -10.32880 -10.24638 -9.81915 -9.72732 -9.14461 -8.52702 -8.49907 -8.06051 -7.55695 -6.42314 -4.35328 1.75309 1.82009 3.01902 3.13655 3.16958 3.74665 3.96621 4.19137 4.59691 4.79617 5.11177 5.24258 5.32907 5.41979 5.48688 5.52187 5.56217 5.67040 5.88525 5.93097 5.96422 6.03947 6.09866 6.24582 6.30344 6.34422 6.38668 6.42102 6.48741 6.51988 6.61191 6.72293 6.74740 6.84625 6.86880 6.89076 7.07603 7.15096 7.20819 7.40057 7.52068 7.87051 8.22708 8.66662 8.90279 9.38234 9.80791 10.49627 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.007885 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.155898 B = 3550.087921 C = 4296.643845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.107 3.893 5 N -0.432 5.432 6 C -0.352 4.352 7 H 0.094 0.906 8 C 0.048 3.952 9 N -0.852 5.852 10 Si 0.910 3.090 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.460 3.540 15 O -0.595 6.595 16 C 0.176 3.824 17 C -0.115 4.115 18 O -0.561 6.561 19 C -0.086 4.086 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.102 4.102 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.272 0.728 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 5.840 -0.395 7.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.163 4.163 4 C -0.017 4.017 5 N -0.150 5.150 6 C -0.480 4.480 7 H 0.111 0.889 8 C -0.159 4.159 9 N -0.487 5.487 10 Si 0.736 3.264 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.201 1.201 14 C 0.248 3.752 15 O -0.481 6.481 16 C 0.131 3.869 17 C -0.172 4.172 18 O -0.378 6.378 19 C -0.087 4.087 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.257 0.743 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.822 5.608 -1.278 7.506 hybrid contribution -0.360 0.051 1.615 1.656 sum -5.182 5.659 0.338 7.681 Atomic orbital electron populations 1.21755 0.96712 1.00626 1.01416 1.21428 0.94897 0.97853 1.01546 1.21871 0.98060 0.95322 1.01093 1.21591 0.91068 0.85205 1.03799 1.43348 1.55466 1.12046 1.04138 1.19532 1.37989 0.99307 0.91127 0.88869 1.25555 0.93894 0.96299 1.00180 1.69751 1.35233 1.11617 1.32108 0.86110 0.78545 0.79911 0.81871 1.18779 1.20269 1.20134 1.20970 0.81276 0.88711 0.84285 1.90530 1.56789 1.68870 1.31903 1.19869 0.85292 0.90240 0.91470 1.21491 1.01861 1.01132 0.92725 1.86330 1.33973 1.90569 1.26944 1.20409 0.94551 0.95763 0.97940 1.21070 0.92603 0.98954 0.99284 1.21023 0.99051 0.94671 0.99291 1.21035 0.95853 0.97800 0.99971 1.21045 0.93276 0.99340 1.00778 1.20975 1.00047 0.93400 0.97594 0.93147 0.93462 0.93082 0.92503 0.92246 0.92396 0.93248 0.93242 0.86801 0.91693 0.91064 0.92363 0.91648 0.74299 0.86135 0.86595 0.86750 0.86530 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.15 0.37 -1.73 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.12 -2.53 5.54 -26.73 -0.15 -2.67 16 4 C 0.11 2.50 4.95 -4.04 -0.02 2.48 16 5 N -0.43 -10.50 2.51 -114.81 -0.29 -10.78 16 6 C -0.35 -8.39 5.86 -14.94 -0.09 -8.48 16 7 H 0.09 2.21 5.94 -52.48 -0.31 1.90 16 8 C 0.05 1.15 5.09 -17.47 -0.09 1.06 16 9 N -0.85 -21.23 10.99 55.50 0.61 -20.62 16 10 Si 0.91 18.50 29.56 -169.99 -5.03 13.47 16 11 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 14 C 0.46 11.15 5.08 -10.99 -0.06 11.10 16 15 O -0.60 -15.51 15.59 5.54 0.09 -15.43 16 16 C 0.18 3.75 0.93 -92.92 -0.09 3.66 16 17 C -0.11 -2.20 8.22 37.16 0.31 -1.89 16 18 O -0.56 -12.51 11.90 -35.23 -0.42 -12.93 16 19 C -0.09 -1.65 3.02 -104.62 -0.32 -1.97 16 20 C -0.10 -1.89 9.15 -39.59 -0.36 -2.25 16 21 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 22 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 23 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 24 C -0.10 -1.76 9.33 -39.58 -0.37 -2.13 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 33 H 0.11 2.82 5.34 -51.92 -0.28 2.54 16 34 H 0.27 6.41 8.32 -40.82 -0.34 6.07 16 35 H 0.07 1.33 7.95 -51.93 -0.41 0.91 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.40 9.10 5.25 45.56 0.24 9.33 16 39 H 0.12 2.44 7.03 -52.49 -0.37 2.07 16 40 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.13 2.09 7.46 -52.49 -0.39 1.70 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -27.17 347.23 -8.14 -35.31 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -6.12 Total: 17.64 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.21 Total: -11.89 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.32 Total: -31.40 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.33 Total: -28.36 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.17 -8.14 -35.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182931620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.349 kcal (2) G-P(sol) polarization free energy of solvation -27.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds