Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47244 * 2 1 4 4 C 1.52994 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47071 * 180.02562 * 4 3 2 6 6 C 1.37092 * 120.00242 * 90.00228 * 5 4 3 7 7 H 1.08007 * 119.99874 * 222.78361 * 6 5 4 8 8 C 1.38949 * 120.00227 * 43.05264 * 6 5 4 9 9 N 1.31412 * 120.00000 * 6.34741 * 8 6 5 10 10 Si 1.86800 * 119.99985 * 186.35053 * 8 6 5 11 11 H 1.48497 * 109.47218 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47369 * 120.00074 * 10 8 6 13 13 H 1.48501 * 109.47177 * 240.00163 * 10 8 6 14 14 C 1.34779 * 119.99727 * 269.99941 * 5 4 3 15 15 O 1.21295 * 120.00094 * 5.64304 * 14 5 4 16 16 C 1.50692 * 119.99982 * 185.64304 * 14 5 4 17 17 C 1.53006 * 109.47339 * 166.02086 * 16 14 5 18 18 O 1.42901 * 109.47194 * 46.02084 * 16 14 5 19 19 C 1.50702 * 109.47439 * 286.01915 * 16 14 5 20 20 C 1.38239 * 119.99713 * 328.87707 * 19 16 14 21 21 C 1.38225 * 119.99852 * 179.78383 * 20 19 16 22 22 C 1.38244 * 120.00050 * 0.44068 * 21 20 19 23 23 C 1.38234 * 120.00050 * 359.81023 * 22 21 20 24 24 C 1.38234 * 120.00247 * 149.14495 * 19 16 14 25 25 H 1.09008 * 109.47246 * 59.99687 * 1 2 3 26 26 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47438 * 299.99899 * 1 2 3 28 28 H 1.09000 * 109.46993 * 240.00360 * 2 1 3 29 29 H 1.08995 * 109.47251 * 119.99978 * 2 1 3 30 30 H 1.09003 * 109.46821 * 59.99723 * 3 2 1 31 31 H 1.08995 * 109.46978 * 300.00144 * 3 2 1 32 32 H 1.08993 * 109.47606 * 60.00133 * 4 3 2 33 33 H 1.09008 * 109.47246 * 300.00313 * 4 3 2 34 34 H 0.96997 * 119.99576 * 184.99874 * 9 8 6 35 35 H 1.08992 * 109.46658 * 59.99647 * 17 16 14 36 36 H 1.08995 * 109.47051 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46468 * 299.99746 * 17 16 14 38 38 H 0.96706 * 114.00263 * 303.96309 * 18 16 14 39 39 H 1.07999 * 119.99844 * 359.97438 * 20 19 16 40 40 H 1.08003 * 120.00203 * 180.26782 * 21 20 19 41 41 H 1.08005 * 119.99795 * 179.83472 * 22 21 20 42 42 H 1.07993 * 120.00281 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99970 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2863 3.4697 1.1888 7 1 3.9754 4.4966 1.3134 8 6 4.9224 2.8052 2.2302 9 7 5.4164 1.6028 2.0379 10 14 5.0752 3.6211 3.9036 11 1 4.4424 4.9638 3.8594 12 1 4.3946 2.7860 4.9256 13 1 6.5108 3.7626 4.2561 14 6 4.2834 3.4594 -1.1657 15 8 3.9858 2.9265 -2.2139 16 6 4.9048 4.8323 -1.1683 17 6 5.3689 5.1794 -2.5843 18 8 6.0257 4.8494 -0.2820 19 6 3.8872 5.8453 -0.7107 20 6 2.5452 5.6446 -0.9748 21 6 1.6113 6.5715 -0.5512 22 6 2.0203 7.7037 0.1284 23 6 3.3628 7.9070 0.3879 24 6 4.2962 6.9779 -0.0319 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9287 -0.8890 33 1 3.9329 0.9288 0.8909 34 1 5.7955 1.1096 2.7821 35 1 4.5140 5.1663 -3.2602 36 1 5.8188 6.1722 -2.5860 37 1 6.1050 4.4468 -2.9151 38 1 5.8162 4.5791 0.6225 39 1 2.2261 4.7620 -1.5092 40 1 0.5624 6.4126 -0.7537 41 1 1.2908 8.4293 0.4570 42 1 3.6823 8.7917 0.9185 43 1 5.3451 7.1366 0.1709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182931620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -84.285281 kcal Electronic energy + Delta-G solvation = -24907.631655 eV Core-core repulsion = 21530.820810 eV Total energy + Delta-G solvation = -3376.810845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60552 -39.59228 -37.49743 -37.26301 -35.49837 -33.44528 -32.98688 -31.70181 -30.19843 -30.07806 -27.03637 -25.72524 -23.99577 -23.39516 -22.34244 -21.88158 -20.89030 -19.51970 -18.45280 -17.82191 -16.88957 -16.64415 -16.29835 -16.16960 -15.74223 -15.46112 -15.25046 -15.03403 -14.60372 -14.37031 -14.11556 -13.81180 -13.59444 -13.47563 -13.40221 -13.13710 -13.09574 -13.03481 -12.87622 -12.65592 -12.29380 -12.10028 -12.06160 -11.96366 -11.89605 -11.82423 -11.47574 -11.42115 -10.96802 -10.21069 -9.77796 -9.56743 -9.44097 -8.26637 -6.25362 0.46535 0.54494 1.39503 1.46782 1.58733 1.90382 2.25217 2.80671 2.90654 3.00089 3.52531 3.75898 4.01665 4.08851 4.14595 4.19538 4.23699 4.30107 4.33470 4.40228 4.54678 4.66668 4.70588 4.82012 4.84936 4.88732 4.90357 4.97743 5.06139 5.09716 5.16056 5.17832 5.20776 5.32233 5.38030 5.42803 5.60248 5.62299 5.63916 5.74074 5.99687 6.15667 6.35182 6.86947 7.02795 7.48929 7.92930 8.67134 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.007885 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.155898 B = 3550.087921 C = 4296.643845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.110 4.110 4 C 0.106 3.894 5 N -0.439 5.439 6 C -0.356 4.356 7 H 0.097 0.903 8 C 0.013 3.987 9 N -0.883 5.883 10 Si 0.975 3.025 11 H -0.255 1.255 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.447 3.553 15 O -0.627 6.627 16 C 0.174 3.826 17 C -0.111 4.111 18 O -0.567 6.567 19 C -0.104 4.104 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.275 0.725 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.392 0.608 39 H 0.092 0.908 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 8.079 1.309 10.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.017 4.017 5 N -0.156 5.156 6 C -0.483 4.483 7 H 0.114 0.886 8 C -0.192 4.192 9 N -0.520 5.520 10 Si 0.798 3.202 11 H -0.178 1.178 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.235 3.765 15 O -0.515 6.515 16 C 0.130 3.870 17 C -0.168 4.168 18 O -0.383 6.383 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.252 0.748 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.144 7.853 0.421 9.980 hybrid contribution 0.047 -0.639 1.052 1.232 sum -6.097 7.214 1.474 9.560 Atomic orbital electron populations 1.21702 0.94124 1.02338 1.01709 1.21408 0.97129 0.95215 1.01616 1.21710 0.95598 0.97585 0.99947 1.21567 0.93212 0.85044 1.01884 1.43564 1.55261 1.12141 1.04626 1.19688 1.38192 0.99457 0.90996 0.88585 1.26300 0.93159 0.96547 1.03218 1.69854 1.35944 1.12925 1.33230 0.85124 0.78339 0.79253 0.77460 1.17801 1.20166 1.20073 1.21618 0.81074 0.89977 0.83816 1.90483 1.58206 1.69944 1.32829 1.19922 0.85612 0.89269 0.92226 1.21484 1.01592 1.02064 0.91663 1.86310 1.34702 1.90512 1.26745 1.20201 0.94035 0.96291 0.99927 1.20964 0.93249 0.99219 1.00726 1.21308 0.99616 0.94452 0.98730 1.21487 0.96575 0.97473 0.98114 1.21463 0.93048 0.99552 0.99603 1.21108 1.00937 0.93302 0.97684 0.93055 0.91045 0.92604 0.92639 0.91998 0.92920 0.94713 0.95679 0.87881 0.91446 0.91082 0.89800 0.93008 0.74841 0.89025 0.84435 0.82828 0.82997 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.12 -3.91 5.93 30.59 0.18 -3.73 16 3 C -0.11 -4.59 5.54 30.59 0.17 -4.42 16 4 C 0.11 5.23 4.95 86.38 0.43 5.66 16 5 N -0.44 -22.17 2.51 -635.54 -1.59 -23.76 16 6 C -0.36 -17.23 5.86 84.04 0.49 -16.74 16 7 H 0.10 4.56 5.94 -2.91 -0.02 4.54 16 8 C 0.01 0.59 5.09 84.93 0.43 1.03 16 9 N -0.88 -44.85 10.99 21.66 0.24 -44.61 16 10 Si 0.98 37.38 29.56 68.60 2.03 39.41 16 11 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 12 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 14 C 0.45 22.65 5.08 87.65 0.45 23.10 16 15 O -0.63 -34.57 15.59 -3.08 -0.05 -34.62 16 16 C 0.17 7.60 0.93 -12.29 -0.01 7.58 16 17 C -0.11 -4.34 8.22 71.98 0.59 -3.75 16 18 O -0.57 -25.66 11.90 -148.98 -1.77 -27.43 16 19 C -0.10 -3.98 3.02 -19.86 -0.06 -4.04 16 20 C -0.12 -4.63 9.15 22.27 0.20 -4.42 16 21 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 22 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 23 C -0.12 -3.10 10.05 22.27 0.22 -2.87 16 24 C -0.11 -3.65 9.33 22.27 0.21 -3.45 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.02 1.31 7.51 -2.39 -0.02 1.29 16 33 H 0.10 5.32 5.34 -2.38 -0.01 5.31 16 34 H 0.28 13.12 8.32 -92.71 -0.77 12.35 16 35 H 0.07 2.74 7.95 -2.39 -0.02 2.72 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.39 18.27 5.25 -74.05 -0.39 17.88 16 39 H 0.09 3.90 7.03 -2.91 -0.02 3.88 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 43 H 0.13 4.06 7.46 -2.91 -0.02 4.04 16 Total: -1.00 -60.72 347.23 3.92 -56.80 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: 0.61 Total: 49.52 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.46 Total: -15.31 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.36 Total: -68.37 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -1.82 Total: -62.05 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -60.72 3.92 -56.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182931620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.486 kcal (2) G-P(sol) polarization free energy of solvation -60.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds