Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47233 * 2 1 4 4 C 1.52992 * 109.47306 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00071 * 263.67155 * 5 4 3 7 7 H 1.07999 * 120.00146 * 140.00719 * 6 5 4 8 8 C 1.38955 * 120.00071 * 320.00278 * 6 5 4 9 9 N 1.31411 * 119.99680 * 342.27130 * 8 6 5 10 10 Si 1.86793 * 120.00212 * 162.27746 * 8 6 5 11 11 H 1.48505 * 109.47109 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47633 * 119.99706 * 10 8 6 13 13 H 1.48501 * 109.47007 * 239.99930 * 10 8 6 14 14 C 1.34772 * 120.00153 * 83.66979 * 5 4 3 15 15 O 1.21298 * 120.00107 * 4.37685 * 14 5 4 16 16 C 1.50701 * 120.00379 * 184.37850 * 14 5 4 17 17 H 1.09001 * 109.47067 * 318.00416 * 16 14 5 18 18 O 1.42900 * 109.47490 * 198.00065 * 16 14 5 19 19 C 1.50702 * 109.47056 * 78.00012 * 16 14 5 20 20 C 1.38240 * 120.00054 * 69.47129 * 19 16 14 21 21 C 1.38235 * 120.00008 * 179.76630 * 20 19 16 22 22 C 1.38232 * 119.99825 * 0.50859 * 21 20 19 23 23 C 1.50701 * 120.00203 * 179.72387 * 22 21 20 24 24 C 1.38239 * 120.00479 * 359.75018 * 22 21 20 25 25 C 1.38234 * 120.00294 * 249.74781 * 19 16 14 26 26 H 1.08999 * 109.46952 * 299.99775 * 1 2 3 27 27 H 1.09000 * 109.47121 * 59.99781 * 1 2 3 28 28 H 1.09001 * 109.46916 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46932 * 240.00593 * 2 1 3 30 30 H 1.08998 * 109.47825 * 120.00429 * 2 1 3 31 31 H 1.08999 * 109.46968 * 60.00235 * 3 2 1 32 32 H 1.09006 * 109.47066 * 300.00565 * 3 2 1 33 33 H 1.09002 * 109.47459 * 60.00026 * 4 3 2 34 34 H 1.08998 * 109.47733 * 300.00417 * 4 3 2 35 35 H 0.97001 * 119.99987 * 179.97438 * 9 8 6 36 36 H 0.96702 * 113.99619 * 299.99791 * 18 16 14 37 37 H 1.07998 * 119.99627 * 0.02562 * 20 19 16 38 38 H 1.07993 * 120.00129 * 180.23629 * 21 20 19 39 39 H 1.09001 * 109.47186 * 270.02539 * 23 22 21 40 40 H 1.09001 * 109.47000 * 30.01998 * 23 22 21 41 41 H 1.08997 * 109.47446 * 150.02495 * 23 22 21 42 42 H 1.07989 * 120.00598 * 179.97438 * 24 22 21 43 43 H 1.08003 * 119.99953 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4097 3.4271 -1.1799 7 1 4.1546 4.4620 -1.3541 8 6 5.0942 2.7072 -2.1515 9 7 5.7069 1.5896 -1.8314 10 14 5.1436 3.3281 -3.9125 11 1 4.3811 4.5987 -4.0110 12 1 6.5534 3.5640 -4.3150 13 1 4.5349 2.3152 -4.8118 14 6 4.1621 3.5013 1.1604 15 8 3.9273 2.9434 2.2115 16 6 4.5698 4.9521 1.1520 17 1 5.3798 5.0978 0.4373 18 8 5.0123 5.3301 2.4571 19 6 3.3908 5.8029 0.7553 20 6 2.3159 5.9380 1.6140 21 6 1.2366 6.7223 1.2521 22 6 1.2276 7.3630 0.0273 23 6 0.0483 8.2130 -0.3699 24 6 2.3001 7.2235 -0.8337 25 6 3.3817 6.4435 -0.4696 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8909 34 1 3.9338 0.9286 0.8890 35 1 6.1844 1.0868 -2.5097 36 1 4.3410 5.2263 3.1454 37 1 2.3212 5.4342 2.5692 38 1 0.3985 6.8310 1.9245 39 1 -0.6844 7.5970 -0.8913 40 1 -0.4072 8.6422 0.5225 41 1 0.3833 9.0145 -1.0282 42 1 2.2929 7.7237 -1.7908 43 1 4.2197 6.3347 -1.1421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183646118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -79.497646 kcal Electronic energy + Delta-G solvation = -24216.167274 eV Core-core repulsion = 20839.564037 eV Total energy + Delta-G solvation = -3376.603237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.73987 -38.29574 -36.21280 -34.91975 -34.03267 -32.59890 -31.53205 -30.62768 -29.05156 -27.68115 -25.16625 -24.68101 -22.60498 -22.37783 -20.74840 -20.39214 -19.21578 -17.66718 -16.79403 -16.16875 -15.30247 -14.95728 -14.78901 -14.62268 -14.57238 -13.87644 -13.75398 -13.60787 -13.28720 -13.09185 -12.95001 -12.86237 -12.27014 -12.13798 -11.96532 -11.73952 -11.56697 -11.38410 -11.34531 -11.20472 -10.89379 -10.65534 -10.59809 -10.52368 -10.36421 -10.18936 -10.07307 -9.75845 -9.10894 -8.61950 -8.57089 -7.97643 -7.50427 -6.43754 -4.17290 1.61243 1.74315 3.04741 3.16569 3.19072 3.74921 4.00978 4.09060 4.60509 4.92213 5.04058 5.06693 5.18336 5.27555 5.35477 5.43614 5.46321 5.54314 5.64261 5.64657 5.78632 5.87632 5.93795 6.04077 6.13333 6.17444 6.22344 6.33250 6.36717 6.40224 6.43737 6.56021 6.69393 6.72156 6.80838 6.84938 7.00289 7.09064 7.30667 7.32989 7.42560 7.91721 8.08766 8.30647 8.99366 9.42412 9.86469 10.58259 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.006804 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.067534 B = 4114.200465 C = 4723.559260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.119 3.881 5 N -0.426 5.426 6 C -0.350 4.350 7 H 0.096 0.904 8 C 0.047 3.953 9 N -0.855 5.855 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.451 3.549 15 O -0.601 6.601 16 C 0.141 3.859 17 H 0.129 0.871 18 O -0.544 6.544 19 C -0.095 4.095 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.095 4.095 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.090 4.090 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.270 0.730 36 H 0.373 0.627 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 6.867 -0.130 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.005 4.005 5 N -0.144 5.144 6 C -0.478 4.478 7 H 0.114 0.886 8 C -0.160 4.160 9 N -0.491 5.491 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.239 3.761 15 O -0.488 6.488 16 C 0.079 3.921 17 H 0.146 0.854 18 O -0.348 6.348 19 C -0.096 4.096 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.095 4.095 23 C -0.167 4.167 24 C -0.141 4.141 25 C -0.108 4.108 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.098 6.549 -0.049 10.414 hybrid contribution -0.442 -0.063 -0.844 0.954 sum -8.540 6.485 -0.892 10.760 Atomic orbital electron populations 1.21753 0.96618 1.00680 1.01458 1.21429 0.94989 0.97696 1.01620 1.21904 0.97873 0.95519 1.01286 1.21347 0.90904 0.84996 1.03208 1.43386 1.54303 1.11734 1.04991 1.19710 1.36260 0.98674 0.93110 0.88640 1.25438 0.93942 0.96270 1.00356 1.69950 1.28960 1.15976 1.34186 0.86147 0.78246 0.79365 0.82695 1.18920 1.20533 1.20412 1.20941 0.81549 0.89298 0.84327 1.90521 1.56471 1.70393 1.31411 1.20591 0.95416 0.90566 0.85487 0.85395 1.86554 1.43234 1.88049 1.17000 1.20294 0.96381 0.97690 0.95262 1.20916 0.93350 0.98304 0.99730 1.20863 0.98286 0.98489 0.96462 1.19842 0.96116 0.98844 0.94701 1.20743 0.95880 0.98541 1.01509 1.20955 0.93851 1.00053 0.99206 1.21091 0.98737 0.95397 0.95579 0.93113 0.93060 0.93391 0.92252 0.92380 0.92970 0.92408 0.88192 0.92963 0.91971 0.77929 0.86264 0.86519 0.91477 0.91924 0.91842 0.86319 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.60 5.49 -26.73 -0.15 -2.74 16 4 C 0.12 2.83 4.89 -4.05 -0.02 2.81 16 5 N -0.43 -10.57 2.52 -114.82 -0.29 -10.86 16 6 C -0.35 -8.55 8.15 -14.93 -0.12 -8.67 16 7 H 0.10 2.19 4.23 -52.49 -0.22 1.97 16 8 C 0.05 1.15 4.97 -17.47 -0.09 1.06 16 9 N -0.86 -22.20 11.51 55.50 0.64 -21.56 16 10 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.45 11.01 6.69 -10.99 -0.07 10.94 16 15 O -0.60 -15.84 15.98 -13.69 -0.22 -16.06 16 16 C 0.14 2.98 2.88 -29.03 -0.08 2.89 16 17 H 0.13 2.76 7.10 -51.93 -0.37 2.39 16 18 O -0.54 -11.00 13.04 -54.46 -0.71 -11.71 16 19 C -0.10 -1.77 4.68 -104.62 -0.49 -2.26 16 20 C -0.10 -1.78 9.13 -39.58 -0.36 -2.15 16 21 C -0.12 -1.82 9.70 -39.58 -0.38 -2.20 16 22 C -0.09 -1.34 5.88 -104.62 -0.62 -1.96 16 23 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 24 C -0.12 -1.85 9.70 -39.58 -0.38 -2.23 16 25 C -0.09 -1.55 8.12 -39.58 -0.32 -1.87 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 2.50 5.67 -51.93 -0.29 2.21 16 34 H 0.05 1.31 7.56 -51.93 -0.39 0.92 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.37 6.62 7.50 45.56 0.34 6.96 16 37 H 0.12 1.96 7.27 -52.49 -0.38 1.58 16 38 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.13 2.17 6.96 -52.48 -0.37 1.80 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -29.08 352.10 -8.70 -37.79 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -5.88 Total: 14.38 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.52 Total: -11.09 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.35 Total: -32.43 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.93 Total: -27.77 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.08 -8.70 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183646118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds