Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47233 * 2 1 4 4 C 1.52992 * 109.47306 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00071 * 263.67155 * 5 4 3 7 7 H 1.07999 * 120.00146 * 140.00719 * 6 5 4 8 8 C 1.38955 * 120.00071 * 320.00278 * 6 5 4 9 9 N 1.31411 * 119.99680 * 342.27130 * 8 6 5 10 10 Si 1.86793 * 120.00212 * 162.27746 * 8 6 5 11 11 H 1.48505 * 109.47109 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47633 * 119.99706 * 10 8 6 13 13 H 1.48501 * 109.47007 * 239.99930 * 10 8 6 14 14 C 1.34772 * 120.00153 * 83.66979 * 5 4 3 15 15 O 1.21298 * 120.00107 * 4.37685 * 14 5 4 16 16 C 1.50701 * 120.00379 * 184.37850 * 14 5 4 17 17 H 1.09001 * 109.47067 * 318.00416 * 16 14 5 18 18 O 1.42900 * 109.47490 * 198.00065 * 16 14 5 19 19 C 1.50702 * 109.47056 * 78.00012 * 16 14 5 20 20 C 1.38240 * 120.00054 * 69.47129 * 19 16 14 21 21 C 1.38235 * 120.00008 * 179.76630 * 20 19 16 22 22 C 1.38232 * 119.99825 * 0.50859 * 21 20 19 23 23 C 1.50701 * 120.00203 * 179.72387 * 22 21 20 24 24 C 1.38239 * 120.00479 * 359.75018 * 22 21 20 25 25 C 1.38234 * 120.00294 * 249.74781 * 19 16 14 26 26 H 1.08999 * 109.46952 * 299.99775 * 1 2 3 27 27 H 1.09000 * 109.47121 * 59.99781 * 1 2 3 28 28 H 1.09001 * 109.46916 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46932 * 240.00593 * 2 1 3 30 30 H 1.08998 * 109.47825 * 120.00429 * 2 1 3 31 31 H 1.08999 * 109.46968 * 60.00235 * 3 2 1 32 32 H 1.09006 * 109.47066 * 300.00565 * 3 2 1 33 33 H 1.09002 * 109.47459 * 60.00026 * 4 3 2 34 34 H 1.08998 * 109.47733 * 300.00417 * 4 3 2 35 35 H 0.97001 * 119.99987 * 179.97438 * 9 8 6 36 36 H 0.96702 * 113.99619 * 299.99791 * 18 16 14 37 37 H 1.07998 * 119.99627 * 0.02562 * 20 19 16 38 38 H 1.07993 * 120.00129 * 180.23629 * 21 20 19 39 39 H 1.09001 * 109.47186 * 270.02539 * 23 22 21 40 40 H 1.09001 * 109.47000 * 30.01998 * 23 22 21 41 41 H 1.08997 * 109.47446 * 150.02495 * 23 22 21 42 42 H 1.07989 * 120.00598 * 179.97438 * 24 22 21 43 43 H 1.08003 * 119.99953 * 359.97438 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4097 3.4271 -1.1799 7 1 4.1546 4.4620 -1.3541 8 6 5.0942 2.7072 -2.1515 9 7 5.7069 1.5896 -1.8314 10 14 5.1436 3.3281 -3.9125 11 1 4.3811 4.5987 -4.0110 12 1 6.5534 3.5640 -4.3150 13 1 4.5349 2.3152 -4.8118 14 6 4.1621 3.5013 1.1604 15 8 3.9273 2.9434 2.2115 16 6 4.5698 4.9521 1.1520 17 1 5.3798 5.0978 0.4373 18 8 5.0123 5.3301 2.4571 19 6 3.3908 5.8029 0.7553 20 6 2.3159 5.9380 1.6140 21 6 1.2366 6.7223 1.2521 22 6 1.2276 7.3630 0.0273 23 6 0.0483 8.2130 -0.3699 24 6 2.3001 7.2235 -0.8337 25 6 3.3817 6.4435 -0.4696 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8909 34 1 3.9338 0.9286 0.8890 35 1 6.1844 1.0868 -2.5097 36 1 4.3410 5.2263 3.1454 37 1 2.3212 5.4342 2.5692 38 1 0.3985 6.8310 1.9245 39 1 -0.6844 7.5970 -0.8913 40 1 -0.4072 8.6422 0.5225 41 1 0.3833 9.0145 -1.0282 42 1 2.2929 7.7237 -1.7908 43 1 4.2197 6.3347 -1.1421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183646118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -95.033007 kcal Electronic energy + Delta-G solvation = -24216.840938 eV Core-core repulsion = 20839.564037 eV Total energy + Delta-G solvation = -3377.276901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32078 -39.82668 -37.87526 -36.71172 -35.63881 -33.89428 -33.36065 -31.85152 -30.56362 -29.05352 -26.94326 -26.11462 -24.15651 -23.64098 -22.12206 -21.86837 -21.06321 -19.45063 -18.27344 -17.96835 -16.98825 -16.44734 -16.34171 -16.08359 -16.03619 -15.50463 -15.30738 -14.84647 -14.57327 -14.54763 -14.31404 -14.28468 -13.85843 -13.58893 -13.20886 -13.08193 -13.04105 -12.90431 -12.88187 -12.62762 -12.48335 -12.15792 -12.04494 -12.00199 -11.87749 -11.79601 -11.59607 -11.46794 -10.97255 -10.33439 -9.81076 -9.48150 -9.32789 -8.32450 -6.12429 0.36150 0.51285 1.38969 1.46738 1.58952 1.90965 2.28541 2.75836 2.87008 3.05306 3.58111 3.76969 3.90949 4.02154 4.07782 4.13208 4.14298 4.25834 4.33243 4.39290 4.53390 4.60009 4.68776 4.79892 4.83664 4.87440 4.89283 4.94582 4.96519 5.02927 5.14127 5.19692 5.29041 5.32912 5.38828 5.44559 5.49897 5.52757 5.68949 5.70199 6.01515 6.12957 6.39298 6.54572 7.07577 7.50867 7.95215 8.71086 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010310 B = 0.006804 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.067534 B = 4114.200465 C = 4723.559260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.120 3.880 5 N -0.436 5.436 6 C -0.362 4.362 7 H 0.110 0.890 8 C 0.004 3.996 9 N -0.893 5.893 10 Si 0.976 3.024 11 H -0.248 1.248 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.438 3.562 15 O -0.632 6.632 16 C 0.152 3.848 17 H 0.117 0.883 18 O -0.550 6.550 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.089 4.089 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.105 4.105 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.272 0.728 36 H 0.382 0.618 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.146 0.854 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 8.611 -1.687 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.150 4.150 4 C -0.003 4.003 5 N -0.153 5.153 6 C -0.489 4.489 7 H 0.127 0.873 8 C -0.199 4.199 9 N -0.530 5.530 10 Si 0.799 3.201 11 H -0.171 1.171 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.227 3.773 15 O -0.521 6.521 16 C 0.090 3.910 17 H 0.134 0.866 18 O -0.356 6.356 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.089 4.089 23 C -0.165 4.165 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.163 0.837 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.441 8.306 -1.603 13.438 hybrid contribution 0.291 -0.589 -0.294 0.720 sum -10.150 7.717 -1.897 12.891 Atomic orbital electron populations 1.21702 0.93967 1.02416 1.01783 1.21418 0.97264 0.95026 1.01714 1.21746 0.95161 0.97864 1.00262 1.21312 0.93203 0.84689 1.01125 1.43640 1.54229 1.11916 1.05493 1.20133 1.36335 0.99456 0.92985 0.87255 1.26311 0.93223 0.96286 1.04121 1.70064 1.29954 1.17406 1.35531 0.85129 0.78216 0.79396 0.77361 1.17105 1.20561 1.20368 1.21610 0.81102 0.90792 0.83815 1.90475 1.57857 1.71466 1.32268 1.20376 0.96193 0.88922 0.85519 0.86573 1.86502 1.44029 1.87841 1.17274 1.20099 0.96121 0.99002 0.96690 1.21017 0.93933 0.99188 0.99546 1.21201 0.98118 0.97477 0.97365 1.20325 0.96821 0.97941 0.93820 1.20823 0.94432 0.98478 1.02743 1.21290 0.93174 0.99315 1.00461 1.21183 0.99777 0.96268 0.95073 0.93021 0.92506 0.90971 0.91941 0.92562 0.94402 0.92691 0.89524 0.95520 0.91830 0.76842 0.86731 0.83823 0.90491 0.90288 0.90234 0.83652 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.89 5.93 30.60 0.18 -3.71 16 3 C -0.11 -4.65 5.49 30.59 0.17 -4.48 16 4 C 0.12 5.98 4.89 86.38 0.42 6.40 16 5 N -0.44 -22.39 2.52 -635.56 -1.60 -23.99 16 6 C -0.36 -17.97 8.15 84.04 0.68 -17.29 16 7 H 0.11 5.03 4.23 -2.91 -0.01 5.02 16 8 C 0.00 0.20 4.97 84.93 0.42 0.62 16 9 N -0.89 -47.53 11.51 21.66 0.25 -47.28 16 10 Si 0.98 38.25 29.59 68.60 2.03 40.28 16 11 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 12 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 13 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 14 C 0.44 22.27 6.69 87.66 0.59 22.85 16 15 O -0.63 -34.85 15.98 15.30 0.24 -34.61 16 16 C 0.15 6.62 2.88 29.10 0.08 6.70 16 17 H 0.12 5.24 7.10 -2.39 -0.02 5.22 16 18 O -0.55 -23.03 13.04 -130.59 -1.70 -24.73 16 19 C -0.12 -4.42 4.68 -19.86 -0.09 -4.51 16 20 C -0.12 -4.00 9.13 22.27 0.20 -3.79 16 21 C -0.12 -3.38 9.70 22.27 0.22 -3.17 16 22 C -0.09 -2.23 5.88 -19.87 -0.12 -2.34 16 23 C -0.11 -1.80 10.01 71.24 0.71 -1.08 16 24 C -0.12 -3.42 9.70 22.27 0.22 -3.21 16 25 C -0.10 -3.53 8.12 22.27 0.18 -3.35 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.09 4.53 5.67 -2.39 -0.01 4.51 16 34 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 35 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.38 14.14 7.50 -74.06 -0.56 13.58 16 37 H 0.11 3.84 7.27 -2.91 -0.02 3.82 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 41 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 42 H 0.15 3.15 8.06 -2.92 -0.02 3.13 16 43 H 0.13 4.19 6.96 -2.91 -0.02 4.17 16 Total: -1.00 -64.40 352.10 4.25 -60.15 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: 0.45 Total: 43.58 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.58 Total: -13.40 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.35 Total: -71.27 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -1.46 Total: -59.34 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -64.40 4.25 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183646118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.884 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds