Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 C 1.52996 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99798 * 265.56001 * 5 4 3 7 7 H 1.07992 * 120.00257 * 145.66998 * 6 5 4 8 8 C 1.38955 * 119.99634 * 325.66646 * 6 5 4 9 9 N 1.31409 * 120.00499 * 338.41690 * 8 6 5 10 10 Si 1.86807 * 119.99688 * 158.41416 * 8 6 5 11 11 H 1.48497 * 109.46837 * 60.00108 * 10 8 6 12 12 H 1.48501 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47339 * 300.00320 * 10 8 6 14 14 C 1.34779 * 120.00568 * 85.55872 * 5 4 3 15 15 O 1.21294 * 119.99240 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00086 * 179.97438 * 14 5 4 17 17 C 1.50696 * 109.46789 * 179.97438 * 16 14 5 18 18 C 1.38238 * 120.00127 * 90.00174 * 17 16 14 19 19 C 1.38234 * 120.00420 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.99548 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99597 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47222 * 90.00621 * 21 20 19 23 23 C 1.38235 * 120.00252 * 0.25897 * 20 19 18 24 24 C 1.38233 * 119.99931 * 359.49155 * 23 20 19 25 25 H 1.09006 * 109.47476 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.47128 * 60.00245 * 1 2 3 27 27 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47393 * 239.99780 * 2 1 3 29 29 H 1.09000 * 109.47128 * 119.99755 * 2 1 3 30 30 H 1.09006 * 109.47091 * 59.99593 * 3 2 1 31 31 H 1.09000 * 109.46925 * 299.99879 * 3 2 1 32 32 H 1.08992 * 109.47393 * 59.99780 * 4 3 2 33 33 H 1.09000 * 109.47128 * 299.99755 * 4 3 2 34 34 H 0.96992 * 120.00252 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46925 * 60.00284 * 16 14 5 36 36 H 1.08993 * 109.47036 * 300.00068 * 16 14 5 37 37 H 1.08003 * 119.99874 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.00151 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47321 * 330.00007 * 21 20 19 40 40 H 1.09006 * 109.47022 * 210.00593 * 21 20 19 41 41 H 0.96701 * 114.00106 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.99611 * 179.72127 * 23 20 19 43 43 H 1.08000 * 120.00276 * 180.23273 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.3739 3.4397 -1.1822 7 1 4.1970 4.4981 -1.3041 8 6 4.9214 2.7022 -2.2249 9 7 5.5242 1.5611 -1.9769 10 14 4.8006 3.3328 -3.9791 11 1 5.4764 4.6513 -4.0787 12 1 5.4573 2.3687 -4.8980 13 1 3.3715 3.4795 -4.3551 14 6 4.1972 3.4890 1.1652 15 8 3.9175 2.9441 2.2121 16 6 4.7001 4.9096 1.1657 17 6 4.7625 5.4197 2.5823 18 6 5.9162 5.2555 3.3260 19 6 5.9733 5.7229 4.6256 20 6 4.8768 6.3552 5.1815 21 6 4.9389 6.8643 6.5985 22 8 5.4160 8.2112 6.6003 23 6 3.7215 6.5151 4.4395 24 6 3.6661 6.0523 3.1382 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8890 33 1 3.9329 0.9289 0.8909 34 1 5.9060 1.0461 -2.7048 35 1 4.0226 5.5350 0.5842 36 1 5.6955 4.9428 0.7230 37 1 6.7729 4.7619 2.8915 38 1 6.8745 5.5942 5.2067 39 1 5.6156 6.2382 7.1802 40 1 3.9430 6.8310 7.0405 41 1 5.4813 8.6042 7.4814 42 1 2.8634 7.0051 4.8754 43 1 2.7648 6.1806 2.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183693049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -76.836049 kcal Electronic energy + Delta-G solvation = -23013.228605 eV Core-core repulsion = 19636.740784 eV Total energy + Delta-G solvation = -3376.487822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.41243 -38.32156 -36.63669 -35.29457 -33.92489 -32.52817 -31.49239 -30.57091 -29.11183 -27.70338 -24.95645 -24.58104 -22.53756 -22.37388 -20.65704 -20.25011 -19.04040 -17.50555 -16.89745 -16.01404 -15.76203 -15.53478 -14.89764 -14.73343 -14.45158 -14.16288 -14.04168 -13.60709 -13.31788 -13.12496 -12.88928 -12.78247 -12.25630 -12.17037 -12.00740 -11.58158 -11.42914 -11.29579 -11.20605 -10.88514 -10.65387 -10.63282 -10.54166 -10.44927 -10.33253 -10.19234 -10.13111 -9.70715 -9.09251 -8.55601 -8.52014 -8.11026 -7.51783 -6.39207 -4.06893 1.63449 1.81132 3.10576 3.19468 3.21396 3.91181 3.96385 4.10566 4.51578 4.83252 4.98195 5.02249 5.05572 5.30901 5.36862 5.40968 5.41903 5.49970 5.57231 5.67847 5.86747 5.92789 6.08616 6.12836 6.22142 6.25737 6.28151 6.40617 6.44859 6.46931 6.52945 6.64135 6.75463 6.77204 6.85912 6.86469 7.11412 7.15020 7.34579 7.38321 7.50651 7.51993 7.92637 8.36702 9.06450 9.53219 9.96689 10.61550 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004047 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.689060 B = 6917.615996 C = 8124.815998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.115 3.885 5 N -0.439 5.439 6 C -0.342 4.342 7 H 0.090 0.910 8 C 0.045 3.955 9 N -0.857 5.857 10 Si 0.912 3.088 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.472 3.528 15 O -0.599 6.599 16 C -0.089 4.089 17 C -0.033 4.033 18 C -0.110 4.110 19 C -0.100 4.100 20 C -0.112 4.112 21 C 0.122 3.878 22 O -0.568 6.568 23 C -0.100 4.100 24 C -0.113 4.113 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.375 0.625 42 H 0.116 0.884 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 5.872 8.518 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.009 4.009 5 N -0.157 5.157 6 C -0.470 4.470 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.494 5.494 10 Si 0.739 3.261 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.261 3.739 15 O -0.485 6.485 16 C -0.129 4.129 17 C -0.033 4.033 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.112 4.112 21 C 0.044 3.956 22 O -0.374 6.374 23 C -0.118 4.118 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.221 0.779 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.808 5.310 8.249 10.204 hybrid contribution -0.045 0.261 -0.470 0.540 sum -2.853 5.571 7.779 9.984 Atomic orbital electron populations 1.21756 0.96680 1.00646 1.01453 1.21426 0.94937 0.97812 1.01562 1.21904 0.98046 0.95428 1.01245 1.21425 0.91002 0.84943 1.03517 1.43469 1.55458 1.12030 1.04717 1.19403 1.41963 0.95411 0.90177 0.89267 1.25313 0.94193 0.96321 1.00334 1.69919 1.31523 1.14930 1.32998 0.86238 0.78769 0.78826 0.82316 1.19678 1.20904 1.19821 1.20188 0.81656 0.88248 0.83845 1.90546 1.55954 1.70282 1.31728 1.20502 1.03916 0.95816 0.92660 1.19676 0.93307 0.94646 0.95713 1.20993 0.98219 0.99513 0.94099 1.20889 0.97373 0.98246 0.95256 1.19426 0.94948 1.01515 0.95328 1.20952 0.97894 0.82834 0.93875 1.86604 1.89106 1.27945 1.33722 1.20866 0.97242 0.99521 0.94205 1.20950 0.97980 0.98952 0.95183 0.93108 0.93058 0.93442 0.92279 0.92441 0.92941 0.92430 0.87519 0.93165 0.91959 0.89420 0.88543 0.86104 0.86556 0.93057 0.93087 0.77881 0.86616 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.63 5.51 -26.73 -0.15 -2.78 16 4 C 0.11 2.75 4.92 -4.04 -0.02 2.73 16 5 N -0.44 -10.95 2.55 -114.82 -0.29 -11.25 16 6 C -0.34 -8.47 8.70 -14.93 -0.13 -8.60 16 7 H 0.09 2.09 6.98 -52.49 -0.37 1.73 16 8 C 0.04 1.10 4.94 -17.47 -0.09 1.01 16 9 N -0.86 -22.23 11.31 55.50 0.63 -21.61 16 10 Si 0.91 19.05 29.60 -169.99 -5.03 14.01 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.47 11.46 7.60 -10.99 -0.08 11.38 16 15 O -0.60 -15.93 15.69 5.55 0.09 -15.84 16 16 C -0.09 -1.80 4.49 -29.04 -0.13 -1.93 16 17 C -0.03 -0.62 4.37 -104.62 -0.46 -1.08 16 18 C -0.11 -1.96 9.70 -39.58 -0.38 -2.35 16 19 C -0.10 -1.58 9.70 -39.58 -0.38 -1.97 16 20 C -0.11 -1.70 5.51 -104.62 -0.58 -2.28 16 21 C 0.12 1.41 7.17 36.01 0.26 1.66 16 22 O -0.57 -6.54 13.64 -35.23 -0.48 -7.03 16 23 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 24 C -0.11 -1.95 9.70 -39.58 -0.38 -2.34 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 2.69 5.34 -51.93 -0.28 2.42 16 33 H 0.05 1.26 7.56 -51.93 -0.39 0.87 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.09 1.63 7.59 -51.93 -0.39 1.24 16 36 H 0.10 1.92 8.04 -51.93 -0.42 1.50 16 37 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.08 -51.93 -0.42 0.09 16 41 H 0.37 2.25 9.12 45.56 0.42 2.67 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -30.71 360.31 -8.42 -39.13 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.06 Total: 9.61 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.70 Total: -12.46 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.33 Total: -32.85 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.39 Total: -22.87 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.71 -8.42 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183693049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.710 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds