Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47109 * 2 1 4 4 C 1.52996 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99798 * 265.56001 * 5 4 3 7 7 H 1.07992 * 120.00257 * 145.66998 * 6 5 4 8 8 C 1.38955 * 119.99634 * 325.66646 * 6 5 4 9 9 N 1.31409 * 120.00499 * 338.41690 * 8 6 5 10 10 Si 1.86807 * 119.99688 * 158.41416 * 8 6 5 11 11 H 1.48497 * 109.46837 * 60.00108 * 10 8 6 12 12 H 1.48501 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47339 * 300.00320 * 10 8 6 14 14 C 1.34779 * 120.00568 * 85.55872 * 5 4 3 15 15 O 1.21294 * 119.99240 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00086 * 179.97438 * 14 5 4 17 17 C 1.50696 * 109.46789 * 179.97438 * 16 14 5 18 18 C 1.38238 * 120.00127 * 90.00174 * 17 16 14 19 19 C 1.38234 * 120.00420 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.99548 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99597 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47222 * 90.00621 * 21 20 19 23 23 C 1.38235 * 120.00252 * 0.25897 * 20 19 18 24 24 C 1.38233 * 119.99931 * 359.49155 * 23 20 19 25 25 H 1.09006 * 109.47476 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.47128 * 60.00245 * 1 2 3 27 27 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47393 * 239.99780 * 2 1 3 29 29 H 1.09000 * 109.47128 * 119.99755 * 2 1 3 30 30 H 1.09006 * 109.47091 * 59.99593 * 3 2 1 31 31 H 1.09000 * 109.46925 * 299.99879 * 3 2 1 32 32 H 1.08992 * 109.47393 * 59.99780 * 4 3 2 33 33 H 1.09000 * 109.47128 * 299.99755 * 4 3 2 34 34 H 0.96992 * 120.00252 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46925 * 60.00284 * 16 14 5 36 36 H 1.08993 * 109.47036 * 300.00068 * 16 14 5 37 37 H 1.08003 * 119.99874 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.00151 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47321 * 330.00007 * 21 20 19 40 40 H 1.09006 * 109.47022 * 210.00593 * 21 20 19 41 41 H 0.96701 * 114.00106 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.99611 * 179.72127 * 23 20 19 43 43 H 1.08000 * 120.00276 * 180.23273 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.3739 3.4397 -1.1822 7 1 4.1970 4.4981 -1.3041 8 6 4.9214 2.7022 -2.2249 9 7 5.5242 1.5611 -1.9769 10 14 4.8006 3.3328 -3.9791 11 1 5.4764 4.6513 -4.0787 12 1 5.4573 2.3687 -4.8980 13 1 3.3715 3.4795 -4.3551 14 6 4.1972 3.4890 1.1652 15 8 3.9175 2.9441 2.2121 16 6 4.7001 4.9096 1.1657 17 6 4.7625 5.4197 2.5823 18 6 5.9162 5.2555 3.3260 19 6 5.9733 5.7229 4.6256 20 6 4.8768 6.3552 5.1815 21 6 4.9389 6.8643 6.5985 22 8 5.4160 8.2112 6.6003 23 6 3.7215 6.5151 4.4395 24 6 3.6661 6.0523 3.1382 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8890 33 1 3.9329 0.9289 0.8909 34 1 5.9060 1.0461 -2.7048 35 1 4.0226 5.5350 0.5842 36 1 5.6955 4.9428 0.7230 37 1 6.7729 4.7619 2.8915 38 1 6.8745 5.5942 5.2067 39 1 5.6156 6.2382 7.1802 40 1 3.9430 6.8310 7.0405 41 1 5.4813 8.6042 7.4814 42 1 2.8634 7.0051 4.8754 43 1 2.7648 6.1806 2.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183693049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -94.875363 kcal Electronic energy + Delta-G solvation = -23014.010849 eV Core-core repulsion = 19636.740784 eV Total energy + Delta-G solvation = -3377.270065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91857 -39.92103 -37.63140 -37.03869 -35.57422 -33.89216 -33.39358 -31.83454 -30.60248 -29.12180 -26.82142 -25.85453 -24.07645 -23.64058 -22.06906 -21.72087 -20.91740 -18.69650 -18.32013 -17.83046 -17.12168 -16.82771 -16.49650 -16.26161 -15.96469 -15.79948 -15.62490 -14.79380 -14.60014 -14.44354 -14.34084 -14.20055 -13.83245 -13.60768 -13.47191 -13.09215 -13.03450 -12.85601 -12.73554 -12.57436 -12.16730 -12.07161 -11.97956 -11.89024 -11.83449 -11.79150 -11.43940 -10.97774 -10.93753 -10.39957 -9.79853 -9.53681 -9.45305 -8.29427 -6.03878 0.35589 0.52823 1.43822 1.49873 1.58001 2.04361 2.32441 2.69251 3.02551 3.19193 3.61764 3.88306 3.93048 4.06202 4.10234 4.14317 4.21603 4.27611 4.30026 4.45070 4.56276 4.58312 4.60422 4.66297 4.78351 4.81683 4.83594 4.88199 4.98704 5.05025 5.14083 5.17325 5.18759 5.35506 5.42246 5.44717 5.48934 5.58436 5.63879 5.75711 6.01342 6.11464 6.43730 6.96334 7.13233 7.60946 8.04771 8.72412 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.004047 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.689060 B = 6917.615996 C = 8124.815998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.116 3.884 5 N -0.450 5.450 6 C -0.358 4.358 7 H 0.100 0.900 8 C 0.005 3.995 9 N -0.891 5.891 10 Si 0.981 3.019 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.460 3.540 15 O -0.629 6.629 16 C -0.077 4.077 17 C -0.060 4.060 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.115 4.115 21 C 0.124 3.876 22 O -0.588 6.588 23 C -0.104 4.104 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.026 0.974 34 H 0.272 0.728 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.143 0.857 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 7.063 8.958 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.008 4.008 5 N -0.168 5.168 6 C -0.486 4.486 7 H 0.118 0.882 8 C -0.198 4.198 9 N -0.528 5.528 10 Si 0.804 3.196 11 H -0.187 1.187 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.250 3.750 15 O -0.517 6.517 16 C -0.116 4.116 17 C -0.061 4.061 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.116 4.116 21 C 0.047 3.953 22 O -0.397 6.397 23 C -0.122 4.122 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.250 0.750 42 H 0.161 0.839 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.704 6.521 8.705 11.490 hybrid contribution 0.286 -0.104 -0.501 0.586 sum -3.419 6.417 8.204 10.962 Atomic orbital electron populations 1.21707 0.94059 1.02383 1.01778 1.21411 0.97194 0.95156 1.01652 1.21761 0.95491 0.97773 1.00239 1.21385 0.93194 0.84681 1.01518 1.43752 1.55500 1.12288 1.05261 1.19766 1.42342 0.96138 0.90304 0.88207 1.26157 0.93357 0.96357 1.03946 1.70025 1.32333 1.16226 1.34204 0.85179 0.78839 0.78426 0.77116 1.18683 1.20950 1.19260 1.20895 0.81131 0.89798 0.83206 1.90500 1.57228 1.71372 1.32639 1.20372 1.03559 0.93334 0.94373 1.19675 0.94637 0.96531 0.95251 1.21133 0.98015 1.00333 0.95303 1.21201 0.98754 0.97774 0.94596 1.19962 0.94199 1.00196 0.97194 1.20952 0.99679 0.83213 0.91438 1.86526 1.89174 1.27818 1.36210 1.21225 0.98483 0.98967 0.93501 1.21142 0.97743 0.99153 0.96338 0.93026 0.92515 0.91011 0.91984 0.92602 0.94374 0.92709 0.88797 0.95583 0.91802 0.88192 0.88877 0.86534 0.84272 0.91291 0.91052 0.75042 0.83906 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.12 -3.95 5.93 30.59 0.18 -3.77 16 3 C -0.11 -4.80 5.51 30.59 0.17 -4.64 16 4 C 0.12 5.78 4.92 86.38 0.42 6.20 16 5 N -0.45 -23.22 2.55 -635.55 -1.62 -24.84 16 6 C -0.36 -17.98 8.70 84.04 0.73 -17.25 16 7 H 0.10 4.68 6.98 -2.91 -0.02 4.66 16 8 C 0.01 0.25 4.94 84.93 0.42 0.67 16 9 N -0.89 -47.06 11.31 21.66 0.24 -46.82 16 10 Si 0.98 38.75 29.60 68.60 2.03 40.78 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 14 C 0.46 23.15 7.60 87.66 0.67 23.81 16 15 O -0.63 -34.81 15.69 -3.07 -0.05 -34.85 16 16 C -0.08 -3.19 4.49 29.10 0.13 -3.06 16 17 C -0.06 -2.33 4.37 -19.87 -0.09 -2.41 16 18 C -0.13 -4.70 9.70 22.27 0.22 -4.49 16 19 C -0.11 -3.25 9.70 22.27 0.22 -3.03 16 20 C -0.12 -3.29 5.51 -19.87 -0.11 -3.40 16 21 C 0.12 2.47 7.17 71.24 0.51 2.98 16 22 O -0.59 -11.71 13.64 -148.98 -2.03 -13.75 16 23 C -0.10 -3.09 9.70 22.27 0.22 -2.87 16 24 C -0.13 -4.34 9.70 22.27 0.22 -4.12 16 25 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 4.93 5.34 -2.39 -0.01 4.92 16 33 H 0.03 1.38 7.56 -2.39 -0.02 1.36 16 34 H 0.27 13.56 8.31 -92.71 -0.77 12.78 16 35 H 0.10 3.79 7.59 -2.38 -0.02 3.78 16 36 H 0.09 3.85 8.04 -2.39 -0.02 3.83 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 39 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 40 H 0.07 1.14 8.08 -2.38 -0.02 1.12 16 41 H 0.40 3.46 9.12 -74.06 -0.68 2.78 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -67.22 360.31 3.51 -63.72 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.32 Total: 34.28 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.61 Total: -18.52 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.38 Total: -71.66 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -2.08 Total: -48.60 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -67.22 3.51 -63.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183693049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.157 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds