Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47422 * 2 1 4 4 C 1.52998 * 109.47422 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.37097 * 120.00081 * 91.93874 * 5 4 3 7 7 H 1.07998 * 119.99806 * 225.68491 * 6 5 4 8 8 C 1.38949 * 119.99819 * 45.68856 * 6 5 4 9 9 N 1.31414 * 119.99722 * 209.08217 * 8 6 5 10 10 Si 1.86797 * 120.00477 * 29.07866 * 8 6 5 11 11 H 1.48503 * 109.46777 * 94.25873 * 10 8 6 12 12 H 1.48494 * 109.47376 * 214.26023 * 10 8 6 13 13 H 1.48505 * 109.47002 * 334.26179 * 10 8 6 14 14 C 1.34769 * 119.99583 * 271.66612 * 5 4 3 15 15 O 1.21296 * 120.00732 * 4.86879 * 14 5 4 16 16 C 1.50708 * 119.99808 * 184.87166 * 14 5 4 17 17 H 1.08994 * 109.46834 * 23.38419 * 16 14 5 18 18 C 1.52995 * 109.46973 * 263.38312 * 16 14 5 19 19 C 1.50703 * 109.46870 * 143.38450 * 16 14 5 20 20 C 1.38269 * 119.94455 * 59.73183 * 19 16 14 21 21 C 1.38139 * 120.05263 * 179.72454 * 20 19 16 22 22 C 1.38736 * 119.94853 * 0.54271 * 21 20 19 23 23 O 1.35892 * 120.05702 * 179.75201 * 22 21 20 24 24 C 1.38729 * 119.88285 * 359.72770 * 22 21 20 25 25 C 1.38141 * 119.94782 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46901 * 299.99943 * 1 2 3 28 28 H 1.09005 * 109.46852 * 59.99934 * 1 2 3 29 29 H 1.08995 * 109.47252 * 239.99749 * 2 1 3 30 30 H 1.09005 * 109.46852 * 120.00066 * 2 1 3 31 31 H 1.09005 * 109.46637 * 59.99906 * 3 2 1 32 32 H 1.09004 * 109.46888 * 300.00342 * 3 2 1 33 33 H 1.08995 * 109.47252 * 59.99749 * 4 3 2 34 34 H 1.09005 * 109.46852 * 300.00066 * 4 3 2 35 35 H 0.97000 * 120.00084 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47593 * 303.22400 * 18 16 14 37 37 H 1.09001 * 109.47213 * 63.22097 * 18 16 14 38 38 H 1.09002 * 109.47026 * 183.22255 * 18 16 14 39 39 H 1.08003 * 119.97043 * 359.97438 * 20 19 16 40 40 H 1.08009 * 120.02631 * 180.26953 * 21 20 19 41 41 H 0.96703 * 113.99588 * 269.97075 * 23 22 21 42 42 H 1.08004 * 120.02748 * 179.97438 * 24 22 21 43 43 H 1.08004 * 119.97351 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3253 3.4559 1.1868 7 1 3.9779 4.4652 1.3511 8 6 5.0428 2.7980 2.1784 9 7 4.8371 3.0916 3.4427 10 14 6.2996 1.4963 1.7144 11 1 7.6455 2.1174 1.6254 12 1 6.3134 0.4307 2.7484 13 1 5.9389 0.9062 0.4002 14 6 4.2505 3.4709 -1.1664 15 8 3.9362 2.9428 -2.2122 16 6 4.8559 4.8510 -1.1715 17 1 5.4378 4.9958 -0.2613 18 6 3.7409 5.8967 -1.2358 19 6 5.7549 5.0008 -2.3717 20 6 5.2365 4.8529 -3.6450 21 6 6.0574 4.9953 -4.7469 22 6 7.4051 5.2758 -4.5750 23 8 8.2156 5.4113 -5.6573 24 6 7.9239 5.4181 -3.2962 25 6 7.0976 5.2808 -2.1976 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9284 0.8892 35 1 5.3377 2.6321 4.1349 36 1 3.1241 5.7167 -2.1163 37 1 3.1244 5.8260 -0.3397 38 1 4.1799 6.8926 -1.2972 39 1 4.1882 4.6299 -3.7782 40 1 5.6511 4.8840 -5.7415 41 1 8.6275 4.5854 -5.9460 42 1 8.9728 5.6360 -3.1596 43 1 7.5009 5.3920 -1.2019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184278581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -68.415898 kcal Electronic energy + Delta-G solvation = -23772.670325 eV Core-core repulsion = 20396.547628 eV Total energy + Delta-G solvation = -3376.122697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83993 -38.76267 -36.74847 -35.41737 -34.05164 -32.85313 -31.95445 -30.67312 -28.75584 -28.03292 -24.95098 -24.21413 -22.95742 -22.44409 -21.04251 -20.59040 -18.88551 -18.19983 -17.05271 -16.29205 -15.62777 -15.30841 -15.06834 -14.83577 -14.69077 -14.11443 -13.85634 -13.60233 -13.29345 -13.10796 -12.93584 -12.73860 -12.31550 -12.27074 -11.95843 -11.86237 -11.77814 -11.50989 -11.31050 -11.08489 -10.79234 -10.67558 -10.62879 -10.48875 -10.37376 -10.18726 -10.01101 -9.83643 -9.16234 -8.71806 -8.51798 -8.08432 -7.67568 -6.60187 -4.18186 1.51084 1.69536 3.05821 3.18862 3.27721 3.66452 3.92740 4.11119 4.39866 4.44488 4.83607 5.18469 5.23359 5.26194 5.37905 5.40371 5.54724 5.70922 5.77657 5.85805 5.88532 5.93489 5.94886 6.13986 6.17649 6.21418 6.24144 6.27930 6.33549 6.39069 6.48879 6.51455 6.54000 6.57325 6.68019 6.73165 6.85025 6.96815 7.10110 7.13130 7.37424 7.78399 8.06162 8.22543 8.93609 9.32437 9.69789 10.49938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.005314 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.151982 B = 5267.559852 C = 6182.894805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.118 3.882 5 N -0.460 5.460 6 C -0.355 4.355 7 H 0.099 0.901 8 C 0.081 3.919 9 N -0.844 5.844 10 Si 0.853 3.147 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.256 1.256 14 C 0.489 3.511 15 O -0.593 6.593 16 C -0.064 4.064 17 H 0.110 0.890 18 C -0.128 4.128 19 C -0.066 4.066 20 C -0.066 4.066 21 C -0.153 4.153 22 C 0.089 3.911 23 O -0.504 6.504 24 C -0.152 4.152 25 C -0.099 4.099 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.275 0.725 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.384 0.616 42 H 0.123 0.877 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 0.365 -8.407 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.165 4.165 4 C -0.006 4.006 5 N -0.180 5.180 6 C -0.482 4.482 7 H 0.117 0.883 8 C -0.129 4.129 9 N -0.477 5.477 10 Si 0.678 3.322 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.180 1.180 14 C 0.278 3.722 15 O -0.478 6.478 16 C -0.086 4.086 17 H 0.128 0.872 18 C -0.186 4.186 19 C -0.067 4.067 20 C -0.084 4.084 21 C -0.171 4.171 22 C 0.045 3.955 23 O -0.314 6.314 24 C -0.171 4.171 25 C -0.117 4.117 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.239 0.761 42 H 0.141 0.859 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.586 0.655 -8.627 8.671 hybrid contribution 1.003 -1.210 0.126 1.576 sum 1.589 -0.555 -8.501 8.666 Atomic orbital electron populations 1.21742 0.96300 1.00795 1.01694 1.21471 0.95466 0.97638 1.01467 1.21865 0.96494 0.95773 1.02357 1.21567 0.93330 0.85113 1.00552 1.43664 1.57068 1.11869 1.05351 1.18889 1.36970 1.02203 0.90121 0.88344 1.25419 0.96221 0.96778 0.94469 1.69893 1.36882 1.41310 0.99579 0.87226 0.83154 0.81958 0.79860 1.20094 1.20760 1.17956 1.20340 0.80481 0.87851 0.83487 1.90515 1.55808 1.69421 1.32047 1.20080 0.96960 0.94340 0.97179 0.87212 1.21611 0.97472 0.97184 1.02330 1.19743 0.93705 0.98663 0.94582 1.21071 1.00707 0.95562 0.91091 1.21369 0.93448 1.02859 0.99447 1.18447 0.89591 1.01480 0.86015 1.84798 1.63842 1.36522 1.46190 1.21266 1.00160 1.03801 0.91859 1.21022 0.92932 0.99119 0.98640 0.93364 0.92801 0.92992 0.92454 0.92307 0.91380 0.92165 0.92141 0.91952 0.91470 0.92716 0.91588 0.92418 0.84776 0.86014 0.76087 0.85944 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.40 5.53 -26.73 -0.15 -2.55 16 4 C 0.12 2.55 3.66 -4.04 -0.01 2.53 16 5 N -0.46 -10.63 1.98 -114.81 -0.23 -10.86 16 6 C -0.36 -8.73 8.08 -14.93 -0.12 -8.85 16 7 H 0.10 2.53 7.56 -52.49 -0.40 2.13 16 8 C 0.08 2.03 5.07 -17.47 -0.09 1.95 16 9 N -0.84 -22.18 13.96 55.50 0.77 -21.41 16 10 Si 0.85 19.45 26.50 -169.99 -4.50 14.95 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.86 5.97 56.52 0.34 -5.52 16 14 C 0.49 10.90 6.59 -10.98 -0.07 10.83 16 15 O -0.59 -14.04 14.26 5.54 0.08 -13.96 16 16 C -0.06 -1.24 2.30 -92.92 -0.21 -1.45 16 17 H 0.11 2.18 6.54 -51.93 -0.34 1.84 16 18 C -0.13 -2.15 8.94 37.16 0.33 -1.82 16 19 C -0.07 -1.19 4.73 -104.60 -0.49 -1.68 16 20 C -0.07 -1.15 8.06 -39.61 -0.32 -1.46 16 21 C -0.15 -2.36 9.99 -39.43 -0.39 -2.76 16 22 C 0.09 1.32 6.70 -39.22 -0.26 1.06 16 23 O -0.50 -6.46 13.50 -19.40 -0.26 -6.72 16 24 C -0.15 -2.27 9.99 -39.44 -0.39 -2.67 16 25 C -0.10 -1.62 9.66 -39.61 -0.38 -2.00 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.33 7.55 -51.93 -0.39 0.94 16 34 H 0.06 1.37 5.15 -51.93 -0.27 1.10 16 35 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.05 0.90 7.51 -51.93 -0.39 0.50 16 37 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.13 2.39 6.66 -52.48 -0.35 2.05 16 40 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.38 3.10 9.06 45.56 0.41 3.51 16 42 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.13 1.91 7.94 -52.48 -0.42 1.49 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -28.62 350.96 -7.19 -35.81 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.98 Total: 9.47 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.36 Total: -12.56 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.55 Total: -32.27 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.18 Total: -20.69 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.50 Total: 14.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.62 -7.19 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184278581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.603 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds