Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47422 * 2 1 4 4 C 1.52998 * 109.47422 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.37097 * 120.00081 * 91.93874 * 5 4 3 7 7 H 1.07998 * 119.99806 * 225.68491 * 6 5 4 8 8 C 1.38949 * 119.99819 * 45.68856 * 6 5 4 9 9 N 1.31414 * 119.99722 * 209.08217 * 8 6 5 10 10 Si 1.86797 * 120.00477 * 29.07866 * 8 6 5 11 11 H 1.48503 * 109.46777 * 94.25873 * 10 8 6 12 12 H 1.48494 * 109.47376 * 214.26023 * 10 8 6 13 13 H 1.48505 * 109.47002 * 334.26179 * 10 8 6 14 14 C 1.34769 * 119.99583 * 271.66612 * 5 4 3 15 15 O 1.21296 * 120.00732 * 4.86879 * 14 5 4 16 16 C 1.50708 * 119.99808 * 184.87166 * 14 5 4 17 17 H 1.08994 * 109.46834 * 23.38419 * 16 14 5 18 18 C 1.52995 * 109.46973 * 263.38312 * 16 14 5 19 19 C 1.50703 * 109.46870 * 143.38450 * 16 14 5 20 20 C 1.38269 * 119.94455 * 59.73183 * 19 16 14 21 21 C 1.38139 * 120.05263 * 179.72454 * 20 19 16 22 22 C 1.38736 * 119.94853 * 0.54271 * 21 20 19 23 23 O 1.35892 * 120.05702 * 179.75201 * 22 21 20 24 24 C 1.38729 * 119.88285 * 359.72770 * 22 21 20 25 25 C 1.38141 * 119.94782 * 359.97438 * 24 22 21 26 26 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46901 * 299.99943 * 1 2 3 28 28 H 1.09005 * 109.46852 * 59.99934 * 1 2 3 29 29 H 1.08995 * 109.47252 * 239.99749 * 2 1 3 30 30 H 1.09005 * 109.46852 * 120.00066 * 2 1 3 31 31 H 1.09005 * 109.46637 * 59.99906 * 3 2 1 32 32 H 1.09004 * 109.46888 * 300.00342 * 3 2 1 33 33 H 1.08995 * 109.47252 * 59.99749 * 4 3 2 34 34 H 1.09005 * 109.46852 * 300.00066 * 4 3 2 35 35 H 0.97000 * 120.00084 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47593 * 303.22400 * 18 16 14 37 37 H 1.09001 * 109.47213 * 63.22097 * 18 16 14 38 38 H 1.09002 * 109.47026 * 183.22255 * 18 16 14 39 39 H 1.08003 * 119.97043 * 359.97438 * 20 19 16 40 40 H 1.08009 * 120.02631 * 180.26953 * 21 20 19 41 41 H 0.96703 * 113.99588 * 269.97075 * 23 22 21 42 42 H 1.08004 * 120.02748 * 179.97438 * 24 22 21 43 43 H 1.08004 * 119.97351 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3253 3.4559 1.1868 7 1 3.9779 4.4652 1.3511 8 6 5.0428 2.7980 2.1784 9 7 4.8371 3.0916 3.4427 10 14 6.2996 1.4963 1.7144 11 1 7.6455 2.1174 1.6254 12 1 6.3134 0.4307 2.7484 13 1 5.9389 0.9062 0.4002 14 6 4.2505 3.4709 -1.1664 15 8 3.9362 2.9428 -2.2122 16 6 4.8559 4.8510 -1.1715 17 1 5.4378 4.9958 -0.2613 18 6 3.7409 5.8967 -1.2358 19 6 5.7549 5.0008 -2.3717 20 6 5.2365 4.8529 -3.6450 21 6 6.0574 4.9953 -4.7469 22 6 7.4051 5.2758 -4.5750 23 8 8.2156 5.4113 -5.6573 24 6 7.9239 5.4181 -3.2962 25 6 7.0976 5.2808 -2.1976 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9284 0.8892 35 1 5.3377 2.6321 4.1349 36 1 3.1241 5.7167 -2.1163 37 1 3.1244 5.8260 -0.3397 38 1 4.1799 6.8926 -1.2972 39 1 4.1882 4.6299 -3.7782 40 1 5.6511 4.8840 -5.7415 41 1 8.6275 4.5854 -5.9460 42 1 8.9728 5.6360 -3.1596 43 1 7.5009 5.3920 -1.2019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184278581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = -84.368672 kcal Electronic energy + Delta-G solvation = -23773.362089 eV Core-core repulsion = 20396.547628 eV Total energy + Delta-G solvation = -3376.814461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30331 -40.21666 -38.00496 -37.02136 -35.64289 -34.27205 -33.81619 -31.89483 -30.18598 -29.35153 -26.83473 -25.68252 -24.36206 -23.67712 -22.38659 -22.04269 -20.67837 -19.29554 -18.75972 -17.97152 -17.25213 -16.62047 -16.45759 -16.27256 -16.07523 -15.76320 -15.48575 -14.89840 -14.67389 -14.64476 -14.48107 -14.18114 -13.78818 -13.68804 -13.40097 -13.21493 -13.03230 -12.97731 -12.95784 -12.75849 -12.26976 -12.14919 -12.05698 -11.91882 -11.86667 -11.76225 -11.42282 -11.34506 -11.02250 -10.35084 -9.86204 -9.54785 -9.37260 -8.55749 -6.14611 0.28624 0.46588 1.22274 1.33375 1.43178 1.92421 2.21464 2.57809 2.74718 3.02854 3.34873 3.84388 3.92788 4.00930 4.08317 4.10672 4.22531 4.29756 4.39354 4.41161 4.53151 4.55792 4.64115 4.66767 4.80488 4.89904 4.94179 4.95130 4.99517 5.04773 5.07775 5.15683 5.21208 5.26446 5.37333 5.42002 5.43549 5.48537 5.54426 5.78949 5.93274 6.14258 6.30442 6.87203 7.00475 7.46777 7.85281 8.58004 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.005314 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.151982 B = 5267.559852 C = 6182.894805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.113 3.887 5 N -0.471 5.471 6 C -0.348 4.348 7 H 0.080 0.920 8 C 0.050 3.950 9 N -0.878 5.878 10 Si 0.900 3.100 11 H -0.273 1.273 12 H -0.275 1.275 13 H -0.260 1.260 14 C 0.485 3.515 15 O -0.608 6.608 16 C -0.060 4.060 17 H 0.098 0.902 18 C -0.121 4.121 19 C -0.088 4.088 20 C -0.077 4.077 21 C -0.156 4.156 22 C 0.098 3.902 23 O -0.506 6.506 24 C -0.151 4.151 25 C -0.106 4.106 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.280 0.720 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.408 0.592 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -0.072 -9.747 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.010 4.010 5 N -0.191 5.191 6 C -0.475 4.475 7 H 0.097 0.903 8 C -0.157 4.157 9 N -0.512 5.512 10 Si 0.724 3.276 11 H -0.199 1.199 12 H -0.200 1.200 13 H -0.184 1.184 14 C 0.275 3.725 15 O -0.494 6.494 16 C -0.081 4.081 17 H 0.117 0.883 18 C -0.179 4.179 19 C -0.089 4.089 20 C -0.095 4.095 21 C -0.175 4.175 22 C 0.053 3.947 23 O -0.319 6.319 24 C -0.170 4.170 25 C -0.124 4.124 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.267 0.733 42 H 0.165 0.835 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.519 0.202 -9.980 10.097 hybrid contribution 0.747 -1.038 0.425 1.347 sum 2.266 -0.836 -9.555 9.855 Atomic orbital electron populations 1.21712 0.94346 1.02352 1.01733 1.21463 0.97177 0.95050 1.02027 1.21752 0.94665 0.98044 1.00975 1.21647 0.95008 0.84392 0.99933 1.43806 1.57693 1.12431 1.05194 1.18721 1.36639 1.01606 0.90545 0.90256 1.25823 0.97178 0.98406 0.94279 1.69932 1.38035 1.42951 1.00316 0.86492 0.81343 0.80349 0.79394 1.19851 1.20027 1.18389 1.20901 0.79780 0.88868 0.82904 1.90492 1.56338 1.70139 1.32415 1.20033 0.97551 0.92904 0.97625 0.88348 1.21565 0.96782 0.97766 1.01751 1.19700 0.94301 1.00787 0.94112 1.21001 1.00440 0.96524 0.91581 1.21550 0.93752 1.02466 0.99694 1.18496 0.89598 0.99951 0.86628 1.84741 1.63511 1.38344 1.45289 1.21517 1.01163 1.02887 0.91394 1.21164 0.92444 0.99127 0.99690 0.91040 0.92911 0.92866 0.91772 0.91856 0.92866 0.93266 0.92660 0.92418 0.91026 0.92605 0.92697 0.90110 0.86084 0.84226 0.73315 0.83527 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.12 -4.43 5.53 30.59 0.17 -4.26 16 4 C 0.11 4.94 3.66 86.38 0.32 5.25 16 5 N -0.47 -22.14 1.98 -635.53 -1.26 -23.39 16 6 C -0.35 -17.48 8.08 84.04 0.68 -16.80 16 7 H 0.08 4.23 7.56 -2.91 -0.02 4.21 16 8 C 0.05 2.55 5.07 84.93 0.43 2.98 16 9 N -0.88 -46.64 13.96 21.66 0.30 -46.34 16 10 Si 0.90 40.04 26.50 68.60 1.82 41.85 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.26 -11.63 5.97 99.48 0.59 -11.04 16 14 C 0.49 21.94 6.59 87.66 0.58 22.52 16 15 O -0.61 -29.11 14.26 -3.08 -0.04 -29.16 16 16 C -0.06 -2.33 2.30 -12.28 -0.03 -2.35 16 17 H 0.10 3.99 6.54 -2.39 -0.02 3.97 16 18 C -0.12 -4.09 8.94 71.98 0.64 -3.44 16 19 C -0.09 -3.13 4.73 -19.85 -0.09 -3.22 16 20 C -0.08 -2.63 8.06 22.25 0.18 -2.45 16 21 C -0.16 -4.55 9.99 22.37 0.22 -4.33 16 22 C 0.10 2.65 6.70 22.51 0.15 2.80 16 23 O -0.51 -11.22 13.50 -92.34 -1.25 -12.46 16 24 C -0.15 -4.13 9.99 22.36 0.22 -3.91 16 25 C -0.11 -3.33 9.66 22.25 0.22 -3.11 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 2.44 7.55 -2.39 -0.02 2.42 16 34 H 0.06 2.54 5.15 -2.38 -0.01 2.53 16 35 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.05 1.85 7.51 -2.39 -0.02 1.83 16 37 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.12 4.36 6.66 -2.91 -0.02 4.34 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.41 5.05 9.06 -74.06 -0.67 4.37 16 42 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.13 3.90 7.94 -2.91 -0.02 3.87 16 Total: -1.00 -60.62 350.96 4.37 -56.24 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.22 Total: 29.91 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.58 Total: -16.65 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -0.95 Total: -69.74 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.29 Total: -41.62 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.82 Total: 41.85 kcal Total: -60.62 4.37 -56.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184278581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.124 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds