Wall clock time and date at job start Tue Mar 31 2020 07:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08999 * 109.47022 * 55.00453 * 3 2 1 5 5 C 1.53005 * 109.47278 * 294.99873 * 3 2 1 6 6 C 1.52999 * 109.46751 * 175.00298 * 3 2 1 7 7 H 1.08996 * 109.47898 * 62.19996 * 6 3 2 8 8 C 1.53006 * 109.47073 * 182.20546 * 6 3 2 9 9 O 1.42894 * 109.47338 * 54.86288 * 8 6 3 10 10 N 1.46507 * 109.47152 * 302.19953 * 6 3 2 11 11 C 1.34773 * 120.00294 * 155.00580 * 10 6 3 12 12 O 1.21549 * 119.99627 * 359.97438 * 11 10 6 13 13 C 1.47874 * 120.00270 * 180.02562 * 11 10 6 14 14 C 1.39923 * 120.02375 * 359.72178 * 13 11 10 15 15 C 1.38332 * 120.35708 * 179.71720 * 14 13 11 16 16 C 1.37758 * 120.41085 * 0.55937 * 15 14 13 17 17 C 1.40744 * 120.04076 * 359.71896 * 16 15 14 18 18 C 1.41431 * 120.17885 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99942 * 25.68452 * 18 17 16 20 20 C 1.39943 * 120.00268 * 205.68713 * 18 17 16 21 21 N 1.30824 * 119.99659 * 13.96819 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 193.97723 * 20 18 17 23 23 H 1.48494 * 109.47377 * 89.99678 * 22 20 18 24 24 H 1.48507 * 109.46873 * 209.99658 * 22 20 18 25 25 H 1.48499 * 109.47101 * 329.99242 * 22 20 18 26 26 C 1.38994 * 120.02725 * 179.97438 * 13 11 10 27 27 H 1.08991 * 109.46914 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.47261 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47043 * 240.00269 * 2 1 3 31 31 H 1.08996 * 109.46734 * 120.00298 * 2 1 3 32 32 H 1.08998 * 109.46552 * 57.18080 * 5 3 2 33 33 H 1.08993 * 109.46972 * 177.17508 * 5 3 2 34 34 H 1.08998 * 109.47060 * 297.18046 * 5 3 2 35 35 H 1.08998 * 109.47357 * 174.86831 * 8 6 3 36 36 H 1.09003 * 109.46609 * 294.86267 * 8 6 3 37 37 H 0.96704 * 114.00168 * 180.02562 * 9 8 6 38 38 H 0.97005 * 119.99340 * 335.00042 * 10 6 3 39 39 H 1.07997 * 119.82386 * 359.97438 * 14 13 11 40 40 H 1.08004 * 119.79392 * 180.26220 * 15 14 13 41 41 H 1.08001 * 119.97794 * 179.74561 * 16 15 14 42 42 H 0.97001 * 119.99755 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.20370 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4443 0.1256 7 1 4.0011 0.9393 -0.7361 8 6 4.0703 2.8874 0.1810 9 8 3.4082 3.5838 1.2385 10 7 3.9547 0.7431 1.3515 11 6 5.1737 0.1761 1.4449 12 8 5.9496 0.2461 0.5119 13 6 5.5670 -0.5322 2.6820 14 6 4.6760 -0.6090 3.7582 15 6 5.0345 -1.2748 4.9165 16 6 6.2766 -1.8599 5.0285 17 6 7.1884 -1.7880 3.9587 18 6 8.4642 -2.3882 4.0703 19 1 8.6124 -3.2206 4.7423 20 6 9.5345 -1.9033 3.3102 21 7 9.4391 -0.7443 2.7111 22 14 11.0991 -2.9113 3.1509 23 1 10.9921 -3.8085 1.9725 24 1 12.2590 -2.0005 2.9760 25 1 11.2901 -3.7260 4.3777 26 6 6.8239 -1.1175 2.7787 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.5522 2.0809 -1.4211 33 1 1.9547 3.1684 -1.2863 34 1 2.1104 1.6176 -2.1460 35 1 5.1452 2.8892 0.3618 36 1 3.8606 3.3824 -0.7673 37 1 3.6799 4.5072 1.3321 38 1 3.3353 0.6870 2.0959 39 1 3.7015 -0.1496 3.6825 40 1 4.3380 -1.3322 5.7400 41 1 6.5507 -2.3745 5.9376 42 1 10.1809 -0.4084 2.1839 43 1 7.5162 -1.0576 1.9521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:21 Heat of formation + Delta-G solvation = -90.504351 kcal Electronic energy + Delta-G solvation = -23454.658800 eV Core-core repulsion = 20077.578276 eV Total energy + Delta-G solvation = -3377.080524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.64093 -37.86830 -36.72686 -35.81485 -33.77582 -33.25756 -30.83247 -29.79158 -29.38273 -27.47069 -25.39196 -25.13756 -22.81326 -21.42441 -20.90004 -20.02012 -19.33348 -17.68397 -17.26560 -16.41223 -15.66770 -15.30854 -15.03271 -14.81518 -14.57696 -14.12079 -13.83183 -13.59535 -13.45725 -13.18252 -12.73971 -12.48858 -12.45912 -12.25686 -12.07096 -11.97109 -11.65761 -11.56177 -11.14642 -11.07717 -10.72012 -10.66379 -10.58947 -10.52120 -10.43256 -9.98751 -9.89770 -9.67273 -9.22766 -8.95620 -8.56962 -7.59814 -7.47260 -6.74368 -4.40292 2.24267 2.84036 3.08911 3.12026 3.17062 3.71421 3.89047 3.94200 4.37586 4.60697 4.68503 4.84056 4.95722 5.32322 5.37004 5.37787 5.45796 5.50774 5.55406 5.63247 5.64148 5.81949 5.89757 5.92071 6.00306 6.03695 6.09790 6.12825 6.31490 6.34830 6.42102 6.74427 6.94925 7.02079 7.05947 7.25163 7.41407 7.65047 7.73463 7.80036 7.96534 8.15949 8.23685 8.53991 8.83427 8.86329 9.00905 10.19173 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.003918 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.109698 B = 7144.086859 C = 7628.569379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.094 4.094 4 H 0.084 0.916 5 C -0.145 4.145 6 C 0.155 3.845 7 H 0.095 0.905 8 C 0.062 3.938 9 O -0.567 6.567 10 N -0.723 5.723 11 C 0.564 3.436 12 O -0.551 6.551 13 C -0.129 4.129 14 C -0.213 4.213 15 C -0.100 4.100 16 C -0.210 4.210 17 C 0.097 3.903 18 C -0.460 4.460 19 H 0.080 0.920 20 C 0.072 3.928 21 N -0.789 5.789 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.090 4.090 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.374 0.626 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.283 0.717 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 5.846 -5.561 14.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.113 4.113 4 H 0.103 0.897 5 C -0.203 4.203 6 C 0.049 3.951 7 H 0.113 0.887 8 C -0.017 4.017 9 O -0.371 6.371 10 N -0.375 5.375 11 C 0.355 3.645 12 O -0.430 6.430 13 C -0.133 4.133 14 C -0.233 4.233 15 C -0.119 4.119 16 C -0.230 4.230 17 C 0.095 3.905 18 C -0.490 4.490 19 H 0.098 0.902 20 C -0.147 4.147 21 N -0.413 5.413 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.110 4.110 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.220 0.780 38 H 0.236 0.764 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.134 5.479 -6.311 14.734 hybrid contribution 0.764 0.273 0.234 0.844 sum -11.370 5.752 -6.077 14.117 Atomic orbital electron populations 1.21811 0.95969 1.01417 1.01635 1.21599 0.95621 0.96152 1.02699 1.21325 0.93900 0.96656 0.99442 0.89747 1.21857 1.01426 1.00364 0.96607 1.20979 0.94475 0.90282 0.89360 0.88719 1.22689 0.96521 0.93048 0.89425 1.86459 1.67764 1.27903 1.55006 1.45906 1.17182 1.56881 1.17564 1.18851 0.80445 0.77304 0.87874 1.90680 1.51359 1.60836 1.40078 1.19497 0.96902 1.03828 0.93033 1.20377 0.98502 1.08827 0.95569 1.20440 0.96209 0.98888 0.96317 1.21123 0.95762 1.07715 0.98369 1.17612 0.92677 0.90367 0.89886 1.19595 0.93021 1.14927 1.21429 0.90171 1.25955 1.00859 0.94343 0.93507 1.69776 1.32733 1.15289 1.23551 0.86242 0.80058 0.80222 0.79798 1.19216 1.20250 1.18627 1.21716 0.93140 0.97638 0.98534 0.92804 0.92734 0.92929 0.92038 0.91383 0.92181 0.92509 0.92700 0.92939 0.93219 0.77982 0.76371 0.89208 0.88924 0.88647 0.90563 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.39 5.30 -26.73 -0.14 -1.53 16 3 C -0.09 -1.07 1.85 -90.62 -0.17 -1.24 16 4 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 5 C -0.14 -1.36 8.64 37.16 0.32 -1.04 16 6 C 0.15 2.22 1.95 -67.92 -0.13 2.08 16 7 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 8 C 0.06 0.83 6.40 37.16 0.24 1.07 16 9 O -0.57 -7.04 12.68 -35.23 -0.45 -7.49 16 10 N -0.72 -12.33 4.17 -54.74 -0.23 -12.56 16 11 C 0.56 12.46 7.74 -12.32 -0.10 12.37 16 12 O -0.55 -13.75 16.00 5.32 0.09 -13.67 16 13 C -0.13 -3.10 5.87 -105.04 -0.62 -3.72 16 14 C -0.21 -4.57 9.55 -38.92 -0.37 -4.94 16 15 C -0.10 -2.17 10.01 -39.72 -0.40 -2.57 16 16 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 17 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 18 C -0.46 -12.22 9.07 -37.73 -0.34 -12.56 16 19 H 0.08 2.02 7.88 -52.48 -0.41 1.61 16 20 C 0.07 1.83 5.21 -17.34 -0.09 1.74 16 21 N -0.79 -21.10 10.81 55.55 0.60 -20.50 16 22 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.09 -2.43 8.23 -38.44 -0.32 -2.75 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.86 7.16 -51.93 -0.37 0.49 16 32 H 0.06 0.50 6.44 -51.93 -0.33 0.17 16 33 H 0.06 0.51 6.75 -51.93 -0.35 0.16 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.54 6.82 -51.93 -0.35 0.19 16 37 H 0.37 3.11 9.12 45.56 0.42 3.52 16 38 H 0.40 6.32 6.28 -40.82 -0.26 6.06 16 39 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 40 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 43 H 0.14 3.98 5.68 -52.49 -0.30 3.68 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -30.35 348.58 -8.00 -38.35 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -5.51 Total: 14.24 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.73 Total: -17.58 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.37 Total: -33.06 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.36 Total: -21.16 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.35 -8.00 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.150 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds