Wall clock time and date at job start Tue Mar 31 2020 07:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08999 * 109.47022 * 55.00453 * 3 2 1 5 5 C 1.53005 * 109.47278 * 294.99873 * 3 2 1 6 6 C 1.52999 * 109.46751 * 175.00298 * 3 2 1 7 7 H 1.08996 * 109.47898 * 62.19996 * 6 3 2 8 8 C 1.53006 * 109.47073 * 182.20546 * 6 3 2 9 9 O 1.42894 * 109.47338 * 54.86288 * 8 6 3 10 10 N 1.46507 * 109.47152 * 302.19953 * 6 3 2 11 11 C 1.34773 * 120.00294 * 155.00580 * 10 6 3 12 12 O 1.21549 * 119.99627 * 359.97438 * 11 10 6 13 13 C 1.47874 * 120.00270 * 180.02562 * 11 10 6 14 14 C 1.39923 * 120.02375 * 359.72178 * 13 11 10 15 15 C 1.38332 * 120.35708 * 179.71720 * 14 13 11 16 16 C 1.37758 * 120.41085 * 0.55937 * 15 14 13 17 17 C 1.40744 * 120.04076 * 359.71896 * 16 15 14 18 18 C 1.41431 * 120.17885 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99942 * 25.68452 * 18 17 16 20 20 C 1.39943 * 120.00268 * 205.68713 * 18 17 16 21 21 N 1.30824 * 119.99659 * 13.96819 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 193.97723 * 20 18 17 23 23 H 1.48494 * 109.47377 * 89.99678 * 22 20 18 24 24 H 1.48507 * 109.46873 * 209.99658 * 22 20 18 25 25 H 1.48499 * 109.47101 * 329.99242 * 22 20 18 26 26 C 1.38994 * 120.02725 * 179.97438 * 13 11 10 27 27 H 1.08991 * 109.46914 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.47261 * 60.00153 * 1 2 3 29 29 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47043 * 240.00269 * 2 1 3 31 31 H 1.08996 * 109.46734 * 120.00298 * 2 1 3 32 32 H 1.08998 * 109.46552 * 57.18080 * 5 3 2 33 33 H 1.08993 * 109.46972 * 177.17508 * 5 3 2 34 34 H 1.08998 * 109.47060 * 297.18046 * 5 3 2 35 35 H 1.08998 * 109.47357 * 174.86831 * 8 6 3 36 36 H 1.09003 * 109.46609 * 294.86267 * 8 6 3 37 37 H 0.96704 * 114.00168 * 180.02562 * 9 8 6 38 38 H 0.97005 * 119.99340 * 335.00042 * 10 6 3 39 39 H 1.07997 * 119.82386 * 359.97438 * 14 13 11 40 40 H 1.08004 * 119.79392 * 180.26220 * 15 14 13 41 41 H 1.08001 * 119.97794 * 179.74561 * 16 15 14 42 42 H 0.97001 * 119.99755 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.20370 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4443 0.1256 7 1 4.0011 0.9393 -0.7361 8 6 4.0703 2.8874 0.1810 9 8 3.4082 3.5838 1.2385 10 7 3.9547 0.7431 1.3515 11 6 5.1737 0.1761 1.4449 12 8 5.9496 0.2461 0.5119 13 6 5.5670 -0.5322 2.6820 14 6 4.6760 -0.6090 3.7582 15 6 5.0345 -1.2748 4.9165 16 6 6.2766 -1.8599 5.0285 17 6 7.1884 -1.7880 3.9587 18 6 8.4642 -2.3882 4.0703 19 1 8.6124 -3.2206 4.7423 20 6 9.5345 -1.9033 3.3102 21 7 9.4391 -0.7443 2.7111 22 14 11.0991 -2.9113 3.1509 23 1 10.9921 -3.8085 1.9725 24 1 12.2590 -2.0005 2.9760 25 1 11.2901 -3.7260 4.3777 26 6 6.8239 -1.1175 2.7787 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.5522 2.0809 -1.4211 33 1 1.9547 3.1684 -1.2863 34 1 2.1104 1.6176 -2.1460 35 1 5.1452 2.8892 0.3618 36 1 3.8606 3.3824 -0.7673 37 1 3.6799 4.5072 1.3321 38 1 3.3353 0.6870 2.0959 39 1 3.7015 -0.1496 3.6825 40 1 4.3380 -1.3322 5.7400 41 1 6.5507 -2.3745 5.9376 42 1 10.1809 -0.4084 2.1839 43 1 7.5162 -1.0576 1.9521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:21 Heat of formation + Delta-G solvation = -110.668617 kcal Electronic energy + Delta-G solvation = -23455.533188 eV Core-core repulsion = 20077.578276 eV Total energy + Delta-G solvation = -3377.954912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17586 -39.33837 -38.39461 -36.78270 -35.63479 -34.69760 -32.29766 -31.31967 -31.06668 -28.55709 -27.18764 -26.21463 -24.35213 -22.87349 -22.50122 -21.30886 -20.82647 -19.44189 -18.34206 -17.99274 -17.20807 -16.93570 -16.46744 -16.14177 -16.03280 -15.60089 -15.08321 -15.04226 -14.79746 -14.53394 -14.38367 -14.27143 -13.54160 -13.35941 -13.24892 -13.09472 -12.91457 -12.81955 -12.79370 -12.54073 -12.43651 -12.18840 -11.88402 -11.57359 -11.51040 -11.49696 -11.44213 -11.11148 -10.99699 -10.68429 -10.06943 -9.46440 -9.37489 -8.63338 -6.40004 0.38129 1.00701 1.36183 1.47535 1.50799 2.10672 2.19475 2.25719 2.79992 3.38043 3.61360 3.69661 3.90403 4.04784 4.06257 4.32149 4.38685 4.41305 4.52142 4.55628 4.58479 4.66352 4.71383 4.79344 4.85833 4.95262 5.08646 5.13150 5.15668 5.18970 5.23197 5.25762 5.32294 5.43143 5.51695 5.55090 5.62152 5.86592 5.92445 6.06094 6.28278 6.52265 6.69974 6.84996 6.88051 6.94478 7.33018 8.32141 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.003918 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.109698 B = 7144.086859 C = 7628.569379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.082 4.082 4 H 0.087 0.913 5 C -0.142 4.142 6 C 0.146 3.854 7 H 0.078 0.922 8 C 0.070 3.930 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.561 3.439 12 O -0.590 6.590 13 C -0.141 4.141 14 C -0.195 4.195 15 C -0.097 4.097 16 C -0.215 4.215 17 C 0.066 3.934 18 C -0.497 4.497 19 H 0.084 0.916 20 C 0.027 3.973 21 N -0.830 5.830 22 Si 0.986 3.014 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.251 1.251 26 C -0.128 4.128 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.081 0.919 37 H 0.393 0.607 38 H 0.409 0.591 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.285 0.715 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.089 6.468 -5.024 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.101 4.101 4 H 0.105 0.895 5 C -0.200 4.200 6 C 0.041 3.959 7 H 0.096 0.904 8 C -0.009 4.009 9 O -0.381 6.381 10 N -0.351 5.351 11 C 0.351 3.649 12 O -0.472 6.472 13 C -0.144 4.144 14 C -0.215 4.215 15 C -0.115 4.115 16 C -0.235 4.235 17 C 0.064 3.936 18 C -0.527 4.527 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.456 5.456 22 Si 0.806 3.194 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.174 1.174 26 C -0.149 4.149 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.243 0.757 38 H 0.247 0.753 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.728 6.133 -5.752 16.959 hybrid contribution 1.338 0.164 0.103 1.352 sum -13.390 6.296 -5.648 15.838 Atomic orbital electron populations 1.21774 0.94069 1.01948 1.02544 1.21606 0.97275 0.95793 1.01575 1.21259 0.91003 0.97015 1.00801 0.89509 1.21855 1.02552 1.00418 0.95159 1.21266 0.96822 0.90479 0.87286 0.90421 1.22506 0.94433 0.92829 0.91173 1.86399 1.67471 1.29532 1.54692 1.45739 1.15278 1.55333 1.18783 1.18716 0.81633 0.77622 0.86940 1.90654 1.52918 1.62462 1.41160 1.19818 0.96454 1.03341 0.94757 1.20836 0.99326 1.07096 0.94263 1.20916 0.95891 0.97175 0.97512 1.21429 0.96374 1.07625 0.98075 1.17960 0.93747 0.91204 0.90705 1.19886 0.93899 1.15867 1.23024 0.89816 1.26868 1.04162 0.95055 0.92604 1.69889 1.33878 1.17092 1.24724 0.85145 0.75724 0.78522 0.79975 1.19059 1.19429 1.17402 1.21520 0.94388 1.00769 0.98232 0.92241 0.91439 0.92676 0.92783 0.93004 0.90454 0.91794 0.92723 0.96363 0.90156 0.75725 0.75319 0.85108 0.84413 0.87267 0.90418 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.62 16 2 C -0.12 -2.59 5.30 30.60 0.16 -2.42 16 3 C -0.08 -1.67 1.85 -10.79 -0.02 -1.69 16 4 H 0.09 1.79 7.48 -2.39 -0.02 1.77 16 5 C -0.14 -2.25 8.64 71.98 0.62 -1.63 16 6 C 0.15 4.07 1.95 44.99 0.09 4.16 16 7 H 0.08 2.47 7.58 -2.39 -0.02 2.45 16 8 C 0.07 1.78 6.40 71.98 0.46 2.24 16 9 O -0.57 -12.91 12.68 -148.98 -1.89 -14.80 16 10 N -0.70 -23.44 4.17 -445.37 -1.86 -25.30 16 11 C 0.56 25.39 7.74 86.80 0.67 26.06 16 12 O -0.59 -31.07 16.00 -3.87 -0.06 -31.13 16 13 C -0.14 -6.86 5.87 -20.14 -0.12 -6.98 16 14 C -0.20 -8.00 9.55 22.70 0.22 -7.78 16 15 C -0.10 -3.96 10.01 22.18 0.22 -3.73 16 16 C -0.22 -10.26 9.78 22.77 0.22 -10.04 16 17 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 18 C -0.50 -27.50 9.07 23.47 0.21 -27.29 16 19 H 0.08 4.36 7.88 -2.91 -0.02 4.34 16 20 C 0.03 1.44 5.21 85.26 0.44 1.89 16 21 N -0.83 -47.05 10.81 21.83 0.24 -46.82 16 22 Si 0.99 40.18 29.58 68.60 2.03 42.21 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.13 -7.30 8.23 23.01 0.19 -7.11 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.90 6.51 -2.39 -0.02 0.88 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.23 7.16 -2.39 -0.02 1.21 16 32 H 0.08 0.99 6.44 -2.39 -0.02 0.98 16 33 H 0.06 0.94 6.75 -2.39 -0.02 0.92 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 1.57 6.82 -2.39 -0.02 1.56 16 37 H 0.39 5.56 9.12 -74.05 -0.68 4.89 16 38 H 0.41 12.06 6.28 -92.70 -0.58 11.47 16 39 H 0.13 4.23 6.38 -2.91 -0.02 4.21 16 40 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 41 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 43 H 0.10 6.45 5.68 -2.91 -0.02 6.43 16 Total: -1.00 -70.42 348.58 2.18 -68.24 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.22 Total: 40.01 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.95 Total: -32.41 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.62 Total: -72.12 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.95 Total: -45.94 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -70.42 2.18 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.427 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds