Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.52999 * 109.46919 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46721 * 179.97438 * 4 3 2 6 6 C 1.36864 * 120.00017 * 283.25117 * 5 4 3 7 7 H 1.07993 * 120.00486 * 314.90216 * 6 5 4 8 8 C 1.39051 * 119.99811 * 134.90292 * 6 5 4 9 9 N 1.31368 * 119.99883 * 338.80113 * 8 6 5 10 10 Si 1.86800 * 120.00387 * 158.80167 * 8 6 5 11 11 H 1.48500 * 109.46853 * 89.99675 * 10 8 6 12 12 H 1.48492 * 109.47297 * 209.99839 * 10 8 6 13 13 H 1.48503 * 109.46729 * 329.99917 * 10 8 6 14 14 C 1.34775 * 119.99658 * 103.26065 * 5 4 3 15 15 O 1.21594 * 119.99812 * 186.51156 * 14 5 4 16 16 C 1.47724 * 120.00365 * 6.50859 * 14 5 4 17 17 C 1.39652 * 120.15339 * 143.91226 * 16 14 5 18 18 C 1.37926 * 119.84663 * 180.29871 * 17 16 14 19 19 C 1.38382 * 120.15587 * 359.42287 * 18 17 16 20 20 C 1.50696 * 119.85052 * 180.27898 * 19 18 17 21 21 C 1.53005 * 109.46930 * 270.31938 * 20 19 18 22 22 O 1.42900 * 109.46832 * 180.02562 * 21 20 19 23 23 C 1.38381 * 120.29902 * 0.60328 * 19 18 17 24 24 C 1.37938 * 120.15131 * 359.67234 * 23 19 18 25 25 H 1.09007 * 109.46571 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47111 * 300.00284 * 1 2 3 27 27 H 1.08996 * 109.46729 * 60.00506 * 1 2 3 28 28 H 1.08996 * 109.47111 * 239.99716 * 2 1 3 29 29 H 1.08997 * 109.46990 * 119.99971 * 2 1 3 30 30 H 1.08996 * 109.47432 * 59.99912 * 3 2 1 31 31 H 1.09004 * 109.46886 * 299.99968 * 3 2 1 32 32 H 1.08996 * 109.47344 * 59.99609 * 4 3 2 33 33 H 1.09003 * 109.46852 * 299.99103 * 4 3 2 34 34 H 0.96999 * 119.99882 * 185.04760 * 9 8 6 35 35 H 1.08003 * 120.07189 * 0.02562 * 17 16 14 36 36 H 1.08003 * 119.92767 * 179.69768 * 18 17 16 37 37 H 1.08996 * 109.47304 * 30.32309 * 20 19 18 38 38 H 1.08999 * 109.47082 * 150.32036 * 20 19 18 39 39 H 1.09000 * 109.46808 * 299.99640 * 21 20 19 40 40 H 1.08999 * 109.47158 * 60.00145 * 21 20 19 41 41 H 0.96696 * 114.00049 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.92182 * 179.70059 * 23 19 18 43 43 H 1.07999 * 120.07607 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.0297 3.5592 -1.1552 7 1 4.3643 3.1205 -2.0836 8 6 3.5699 4.8713 -1.1322 9 7 2.7936 5.2781 -0.1536 10 14 4.0559 6.0554 -2.4927 11 1 3.0566 5.9866 -3.5891 12 1 4.1035 7.4377 -1.9523 13 1 5.3939 5.6830 -3.0184 14 6 4.5358 3.3702 1.1345 15 8 4.8302 4.5495 1.1647 16 6 4.7013 2.5364 2.3426 17 6 5.7790 2.7549 3.2035 18 6 5.9309 1.9686 4.3264 19 6 5.0120 0.9728 4.6073 20 6 5.1812 0.1219 5.8395 21 6 6.0331 -1.1030 5.5003 22 8 6.1930 -1.9102 6.6686 23 6 3.9421 0.7505 3.7584 24 6 3.7811 1.5257 2.6288 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 2.4134 6.1703 -0.1751 35 1 6.4943 3.5350 2.9880 36 1 6.7666 2.1333 4.9905 37 1 5.6749 0.7036 6.6178 38 1 4.2029 -0.2028 6.1940 39 1 5.5392 -1.6847 4.7220 40 1 7.0113 -0.7783 5.1458 41 1 6.7240 -2.7058 6.5273 42 1 3.2312 -0.0315 3.9809 43 1 2.9459 1.3509 1.9669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191766476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -49.836171 kcal Electronic energy + Delta-G solvation = -23613.567325 eV Core-core repulsion = 20238.250306 eV Total energy + Delta-G solvation = -3375.317019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.67860 -37.92033 -36.81275 -35.54750 -33.46868 -32.97603 -31.65814 -30.54717 -28.49785 -28.19487 -25.06989 -23.65901 -22.75614 -22.28621 -21.02140 -20.52110 -19.50174 -17.65868 -17.08560 -15.88402 -15.78931 -15.49457 -14.83841 -14.51295 -14.45036 -14.28723 -14.06728 -13.74063 -13.55973 -13.14370 -12.80070 -12.55295 -12.27770 -12.06428 -11.97211 -11.82205 -11.44468 -11.22970 -11.06129 -10.87788 -10.87314 -10.77844 -10.58272 -10.51341 -10.31806 -10.16595 -10.10111 -9.93107 -8.77071 -8.49520 -8.33506 -7.97623 -7.12163 -6.13135 -3.85416 1.48088 1.77342 3.29040 3.39725 3.42032 3.78216 4.15667 4.29492 4.64561 4.86242 4.89570 5.08433 5.16813 5.18786 5.29382 5.34401 5.34746 5.44538 5.48155 5.52255 5.67024 5.73871 5.80624 5.89331 5.96371 6.04990 6.10011 6.18784 6.23934 6.26129 6.37171 6.39059 6.42450 6.51684 6.75495 6.82295 6.85913 6.98582 7.14328 7.33392 7.41606 7.61403 8.27397 9.03138 9.15701 9.62963 10.27551 10.94799 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.004747 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.117604 B = 5896.521747 C = 7232.237268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.130 4.130 4 C 0.082 3.918 5 N -0.439 5.439 6 C -0.354 4.354 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.820 5.820 10 Si 0.910 3.090 11 H -0.282 1.282 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.501 3.499 15 O -0.532 6.532 16 C -0.091 4.091 17 C -0.081 4.081 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.075 4.075 21 C 0.080 3.920 22 O -0.578 6.578 23 C -0.124 4.124 24 C -0.117 4.117 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.265 0.735 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.378 0.622 42 H 0.119 0.881 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 -13.861 7.056 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.168 4.168 4 C -0.042 4.042 5 N -0.159 5.159 6 C -0.480 4.480 7 H 0.097 0.903 8 C -0.135 4.135 9 N -0.453 5.453 10 Si 0.737 3.263 11 H -0.209 1.209 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.289 3.711 15 O -0.411 6.411 16 C -0.095 4.095 17 C -0.100 4.100 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.112 4.112 21 C 0.002 3.998 22 O -0.384 6.384 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.225 0.775 42 H 0.137 0.863 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.231 -12.573 7.410 14.646 hybrid contribution 0.351 0.223 -0.932 1.021 sum 1.583 -12.350 6.478 14.035 Atomic orbital electron populations 1.21753 0.96321 1.00688 1.01951 1.21536 0.95561 0.97741 1.01346 1.21936 0.96452 0.94984 1.03424 1.22150 0.93614 0.86996 1.01395 1.43120 1.53552 1.10340 1.08869 1.18934 1.46368 0.95351 0.87372 0.90298 1.25268 0.93551 0.98363 0.96328 1.69826 1.25458 1.18774 1.31197 0.86259 0.79174 0.80352 0.80564 1.20866 1.20936 1.19536 1.17957 0.82313 0.87559 0.83302 1.90625 1.52179 1.15288 1.83022 1.20645 0.95561 0.96320 0.96925 1.21168 0.97311 0.98240 0.93290 1.20882 0.99146 0.96320 0.97690 1.19641 0.96133 0.97365 0.96283 1.20406 1.00837 0.94415 0.95581 1.22204 0.98905 0.91757 0.86886 1.86450 1.76266 1.39513 1.36143 1.20924 0.98013 1.00452 0.94793 1.22078 0.99967 0.94613 0.96862 0.93429 0.92907 0.92757 0.92265 0.92603 0.91994 0.90582 0.92824 0.90266 0.92524 0.85578 0.86325 0.90574 0.90539 0.93371 0.93408 0.77492 0.86344 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 3 C -0.13 -2.35 4.51 -26.73 -0.12 -2.47 16 4 C 0.08 1.61 4.86 -4.04 -0.02 1.59 16 5 N -0.44 -11.01 2.53 -115.93 -0.29 -11.30 16 6 C -0.35 -9.67 9.04 -15.00 -0.14 -9.81 16 7 H 0.08 2.08 7.92 -52.49 -0.42 1.66 16 8 C 0.08 2.16 4.29 -17.45 -0.07 2.09 16 9 N -0.82 -24.27 11.83 55.50 0.66 -23.61 16 10 Si 0.91 21.88 29.61 -169.99 -5.03 16.85 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.50 13.08 6.83 -12.39 -0.08 13.00 16 15 O -0.53 -16.17 14.46 5.28 0.08 -16.09 16 16 C -0.09 -1.91 5.45 -104.97 -0.57 -2.49 16 17 C -0.08 -1.51 9.62 -39.17 -0.38 -1.89 16 18 C -0.12 -1.85 9.68 -39.64 -0.38 -2.23 16 19 C -0.09 -1.31 5.14 -104.52 -0.54 -1.84 16 20 C -0.08 -0.86 5.71 -27.88 -0.16 -1.02 16 21 C 0.08 0.81 7.03 37.16 0.26 1.07 16 22 O -0.58 -5.71 13.66 -35.23 -0.48 -6.19 16 23 C -0.12 -1.82 9.68 -39.64 -0.38 -2.20 16 24 C -0.12 -2.08 7.38 -39.17 -0.29 -2.37 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 1.22 6.98 -51.93 -0.36 0.86 16 31 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 32 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.08 1.41 4.02 -51.93 -0.21 1.20 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.13 2.39 8.02 -52.48 -0.42 1.97 16 36 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 1.96 9.12 45.56 0.42 2.37 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.15 2.58 3.38 -52.49 -0.18 2.40 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -33.87 351.66 -8.23 -42.10 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.79 Total: 4.88 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.67 Total: -11.93 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.36 Total: -34.92 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.40 Total: -22.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.87 -8.23 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191766476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.737 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds