Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.52999 * 109.46919 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46721 * 179.97438 * 4 3 2 6 6 C 1.36864 * 120.00017 * 283.25117 * 5 4 3 7 7 H 1.07993 * 120.00486 * 314.90216 * 6 5 4 8 8 C 1.39051 * 119.99811 * 134.90292 * 6 5 4 9 9 N 1.31368 * 119.99883 * 338.80113 * 8 6 5 10 10 Si 1.86800 * 120.00387 * 158.80167 * 8 6 5 11 11 H 1.48500 * 109.46853 * 89.99675 * 10 8 6 12 12 H 1.48492 * 109.47297 * 209.99839 * 10 8 6 13 13 H 1.48503 * 109.46729 * 329.99917 * 10 8 6 14 14 C 1.34775 * 119.99658 * 103.26065 * 5 4 3 15 15 O 1.21594 * 119.99812 * 186.51156 * 14 5 4 16 16 C 1.47724 * 120.00365 * 6.50859 * 14 5 4 17 17 C 1.39652 * 120.15339 * 143.91226 * 16 14 5 18 18 C 1.37926 * 119.84663 * 180.29871 * 17 16 14 19 19 C 1.38382 * 120.15587 * 359.42287 * 18 17 16 20 20 C 1.50696 * 119.85052 * 180.27898 * 19 18 17 21 21 C 1.53005 * 109.46930 * 270.31938 * 20 19 18 22 22 O 1.42900 * 109.46832 * 180.02562 * 21 20 19 23 23 C 1.38381 * 120.29902 * 0.60328 * 19 18 17 24 24 C 1.37938 * 120.15131 * 359.67234 * 23 19 18 25 25 H 1.09007 * 109.46571 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47111 * 300.00284 * 1 2 3 27 27 H 1.08996 * 109.46729 * 60.00506 * 1 2 3 28 28 H 1.08996 * 109.47111 * 239.99716 * 2 1 3 29 29 H 1.08997 * 109.46990 * 119.99971 * 2 1 3 30 30 H 1.08996 * 109.47432 * 59.99912 * 3 2 1 31 31 H 1.09004 * 109.46886 * 299.99968 * 3 2 1 32 32 H 1.08996 * 109.47344 * 59.99609 * 4 3 2 33 33 H 1.09003 * 109.46852 * 299.99103 * 4 3 2 34 34 H 0.96999 * 119.99882 * 185.04760 * 9 8 6 35 35 H 1.08003 * 120.07189 * 0.02562 * 17 16 14 36 36 H 1.08003 * 119.92767 * 179.69768 * 18 17 16 37 37 H 1.08996 * 109.47304 * 30.32309 * 20 19 18 38 38 H 1.08999 * 109.47082 * 150.32036 * 20 19 18 39 39 H 1.09000 * 109.46808 * 299.99640 * 21 20 19 40 40 H 1.08999 * 109.47158 * 60.00145 * 21 20 19 41 41 H 0.96696 * 114.00049 * 180.02562 * 22 21 20 42 42 H 1.07997 * 119.92182 * 179.70059 * 23 19 18 43 43 H 1.07999 * 120.07607 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.0297 3.5592 -1.1552 7 1 4.3643 3.1205 -2.0836 8 6 3.5699 4.8713 -1.1322 9 7 2.7936 5.2781 -0.1536 10 14 4.0559 6.0554 -2.4927 11 1 3.0566 5.9866 -3.5891 12 1 4.1035 7.4377 -1.9523 13 1 5.3939 5.6830 -3.0184 14 6 4.5358 3.3702 1.1345 15 8 4.8302 4.5495 1.1647 16 6 4.7013 2.5364 2.3426 17 6 5.7790 2.7549 3.2035 18 6 5.9309 1.9686 4.3264 19 6 5.0120 0.9728 4.6073 20 6 5.1812 0.1219 5.8395 21 6 6.0331 -1.1030 5.5003 22 8 6.1930 -1.9102 6.6686 23 6 3.9421 0.7505 3.7584 24 6 3.7811 1.5257 2.6288 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 2.4134 6.1703 -0.1751 35 1 6.4943 3.5350 2.9880 36 1 6.7666 2.1333 4.9905 37 1 5.6749 0.7036 6.6178 38 1 4.2029 -0.2028 6.1940 39 1 5.5392 -1.6847 4.7220 40 1 7.0113 -0.7783 5.1458 41 1 6.7240 -2.7058 6.5273 42 1 3.2312 -0.0315 3.9809 43 1 2.9459 1.3509 1.9669 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191766476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = -72.366211 kcal Electronic energy + Delta-G solvation = -23614.544301 eV Core-core repulsion = 20238.250306 eV Total energy + Delta-G solvation = -3376.293995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22758 -39.39939 -37.68215 -37.21422 -35.18348 -34.27411 -33.40259 -31.92214 -29.76963 -29.62703 -26.89861 -24.95857 -24.07139 -23.63574 -22.25834 -21.84248 -21.20917 -18.94336 -18.40652 -17.65659 -17.13444 -16.81633 -16.55571 -15.92895 -15.70308 -15.57524 -15.32248 -15.10892 -15.00214 -14.43721 -14.24706 -14.13976 -13.69472 -13.51933 -13.24841 -13.09035 -12.87739 -12.73923 -12.70725 -12.34534 -12.32660 -12.17416 -12.03029 -11.99358 -11.82590 -11.56215 -11.37501 -10.82285 -10.81312 -10.16439 -9.81147 -9.53608 -9.15095 -8.24176 -6.00525 0.10609 0.46242 1.34009 1.42242 1.49507 2.22998 2.38867 2.92661 3.08840 3.23120 3.38308 3.88406 4.01363 4.06275 4.12604 4.16879 4.24018 4.24992 4.41233 4.41911 4.44538 4.56335 4.60549 4.63573 4.72483 4.89174 4.95867 4.97733 5.01263 5.05883 5.15500 5.16555 5.18064 5.35517 5.43987 5.45810 5.46216 5.58294 5.62204 5.68619 6.03401 6.18868 6.94597 6.98688 7.16461 7.62187 8.29227 8.84341 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.004747 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.117604 B = 5896.521747 C = 7232.237268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.116 4.116 4 C 0.080 3.920 5 N -0.453 5.453 6 C -0.372 4.372 7 H 0.082 0.918 8 C 0.028 3.972 9 N -0.861 5.861 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.294 1.294 13 H -0.267 1.267 14 C 0.489 3.511 15 O -0.593 6.593 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.114 4.114 19 C -0.072 4.072 20 C -0.074 4.074 21 C 0.083 3.917 22 O -0.593 6.593 23 C -0.113 4.113 24 C -0.119 4.119 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.260 0.740 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.399 0.601 42 H 0.157 0.843 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -17.300 8.612 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.155 4.155 4 C -0.043 4.043 5 N -0.172 5.172 6 C -0.499 4.499 7 H 0.100 0.900 8 C -0.180 4.180 9 N -0.495 5.495 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.220 1.220 13 H -0.192 1.192 14 C 0.279 3.721 15 O -0.476 6.476 16 C -0.132 4.132 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.073 4.073 20 C -0.111 4.111 21 C 0.005 3.995 22 O -0.402 6.402 23 C -0.130 4.130 24 C -0.138 4.138 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.167 0.833 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.249 0.751 42 H 0.175 0.825 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.303 -16.085 8.942 18.449 hybrid contribution 0.400 1.142 -1.262 1.748 sum 1.703 -14.943 7.681 16.887 Atomic orbital electron populations 1.21748 0.95350 1.02245 1.01294 1.21487 0.96343 0.94300 1.03088 1.21777 0.95221 0.97810 1.00687 1.22396 0.94586 0.84343 1.02934 1.43384 1.53547 1.12062 1.08190 1.19244 1.46131 0.96157 0.88413 0.90010 1.26099 0.93371 0.99966 0.98556 1.69947 1.27321 1.18697 1.33503 0.85341 0.79352 0.77486 0.78474 1.18560 1.21986 1.19151 1.18807 0.80935 0.87481 0.84902 1.90555 1.54600 1.17997 1.84478 1.20334 0.98464 0.98097 0.96274 1.21171 0.96791 0.98945 0.94547 1.21154 1.00199 0.95433 0.96367 1.19994 0.94595 0.96214 0.96463 1.20432 1.01992 0.94719 0.93987 1.22107 0.98896 0.91366 0.87131 1.86390 1.76962 1.40673 1.36166 1.21283 0.98574 1.00112 0.93051 1.22055 0.99139 0.94257 0.98317 0.90666 0.93317 0.93819 0.91051 0.90222 0.94142 0.93962 0.91938 0.87918 0.93129 0.87308 0.83328 0.89997 0.89493 0.92468 0.93025 0.75129 0.82527 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.11 -2.88 5.92 30.60 0.18 -2.70 16 3 C -0.12 -4.27 4.51 30.59 0.14 -4.13 16 4 C 0.08 3.16 4.86 86.38 0.42 3.58 16 5 N -0.45 -23.71 2.53 -638.94 -1.62 -25.33 16 6 C -0.37 -21.27 9.04 84.10 0.76 -20.51 16 7 H 0.08 4.47 7.92 -2.91 -0.02 4.44 16 8 C 0.03 1.63 4.29 84.96 0.36 1.99 16 9 N -0.86 -53.87 11.83 21.68 0.26 -53.62 16 10 Si 0.97 46.72 29.61 68.60 2.03 48.76 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.49 26.90 6.83 86.75 0.59 27.50 16 15 O -0.59 -38.44 14.46 -4.01 -0.06 -38.50 16 16 C -0.13 -5.53 5.45 -20.09 -0.11 -5.64 16 17 C -0.10 -3.60 9.62 22.54 0.22 -3.38 16 18 C -0.11 -3.16 9.68 22.23 0.22 -2.95 16 19 C -0.07 -1.74 5.14 -19.80 -0.10 -1.84 16 20 C -0.07 -1.34 5.71 29.85 0.17 -1.17 16 21 C 0.08 1.28 7.03 71.98 0.51 1.79 16 22 O -0.59 -9.20 13.66 -148.98 -2.03 -11.23 16 23 C -0.11 -2.89 9.68 22.23 0.22 -2.67 16 24 C -0.12 -4.10 7.38 22.54 0.17 -3.94 16 25 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.66 8.13 -2.39 -0.02 1.65 16 30 H 0.04 1.64 6.98 -2.39 -0.02 1.62 16 31 H 0.04 1.81 8.07 -2.38 -0.02 1.79 16 32 H 0.06 2.33 8.13 -2.39 -0.02 2.31 16 33 H 0.10 3.58 4.02 -2.39 -0.01 3.57 16 34 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.11 4.37 8.02 -2.91 -0.02 4.35 16 36 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 38 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.40 2.53 9.12 -74.06 -0.68 1.85 16 42 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.15 4.99 3.38 -2.91 -0.01 4.98 16 Total: -1.00 -79.48 351.66 3.36 -76.13 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.33 Total: 20.60 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.45 Total: -16.81 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.36 Total: -78.94 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -2.09 Total: -49.73 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.76 kcal Total: -79.48 3.36 -76.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191766476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.761 kcal (2) G-P(sol) polarization free energy of solvation -79.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds