Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.36872 * 119.99891 * 263.21433 * 5 4 3 7 7 H 1.08007 * 119.99741 * 131.35043 * 6 5 4 8 8 C 1.39041 * 120.00174 * 311.35111 * 6 5 4 9 9 N 1.31362 * 120.00058 * 351.01483 * 8 6 5 10 10 Si 1.86803 * 120.00174 * 171.01697 * 8 6 5 11 11 H 1.48501 * 109.47129 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47359 * 119.99587 * 10 8 6 13 13 H 1.48504 * 109.46926 * 240.00073 * 10 8 6 14 14 C 1.34773 * 119.99857 * 83.21247 * 5 4 3 15 15 O 1.21592 * 120.00022 * 349.90172 * 14 5 4 16 16 C 1.47734 * 119.99718 * 170.17152 * 14 5 4 17 17 C 1.39645 * 120.14943 * 336.00251 * 16 14 5 18 18 C 1.37944 * 119.84105 * 179.74080 * 17 16 14 19 19 C 1.38375 * 120.15266 * 0.51088 * 18 17 16 20 20 C 1.50692 * 119.84862 * 179.74326 * 19 18 17 21 21 H 1.09006 * 109.47218 * 205.02288 * 20 19 18 22 22 C 1.52997 * 109.47583 * 85.01960 * 20 19 18 23 23 O 1.42897 * 109.46944 * 325.01895 * 20 19 18 24 24 C 1.38381 * 120.30412 * 359.76366 * 19 18 17 25 25 C 1.37936 * 120.15141 * 359.97438 * 24 19 18 26 26 H 1.08997 * 109.47272 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47280 * 60.00202 * 1 2 3 28 28 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47272 * 240.00055 * 2 1 3 30 30 H 1.09001 * 109.47280 * 119.99798 * 2 1 3 31 31 H 1.09002 * 109.47450 * 59.99930 * 3 2 1 32 32 H 1.09003 * 109.47384 * 300.00110 * 3 2 1 33 33 H 1.09005 * 109.47300 * 60.00356 * 4 3 2 34 34 H 1.09001 * 109.47280 * 299.99798 * 4 3 2 35 35 H 0.96999 * 120.00264 * 180.02562 * 9 8 6 36 36 H 1.07997 * 120.07656 * 359.97438 * 17 16 14 37 37 H 1.07995 * 119.91847 * 180.25362 * 18 17 16 38 38 H 1.09001 * 109.46801 * 60.00024 * 22 20 19 39 39 H 1.08992 * 109.47768 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47011 * 300.00665 * 22 20 19 41 41 H 0.96704 * 114.00035 * 60.00659 * 23 20 19 42 42 H 1.07999 * 119.92209 * 179.97438 * 24 19 18 43 43 H 1.08001 * 120.07586 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4190 3.4215 -1.1772 7 1 4.0478 4.4067 -1.4185 8 6 5.2632 2.7606 -2.0625 9 7 5.8549 1.6460 -1.6977 10 14 5.5560 3.4576 -3.7707 11 1 4.7782 4.7122 -3.9334 12 1 7.0022 3.7450 -3.9469 13 1 5.1197 2.4696 -4.7900 14 6 4.1524 3.5057 1.1587 15 8 3.6647 3.0487 2.1744 16 6 4.8429 4.8113 1.1933 17 6 5.8035 5.1225 0.2287 18 6 6.4405 6.3455 0.2639 19 6 6.1371 7.2589 1.2581 20 6 6.8413 8.5907 1.2935 21 1 6.8365 8.9773 2.3126 22 6 6.1184 9.5745 0.3713 23 8 8.1906 8.4278 0.8522 24 6 5.1903 6.9547 2.2204 25 6 4.5419 5.7376 2.1940 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9329 0.9288 0.8909 35 1 6.4441 1.1851 -2.3152 36 1 6.0444 4.4087 -0.5452 37 1 7.1806 6.5891 -0.4839 38 1 5.0891 9.6987 0.7079 39 1 6.6274 10.5379 0.3972 40 1 6.1232 9.1878 -0.6478 41 1 8.2713 8.0863 -0.0489 42 1 4.9586 7.6720 2.9939 43 1 3.8034 5.5013 2.9459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192365073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = -75.881611 kcal Electronic energy + Delta-G solvation = -23594.121253 eV Core-core repulsion = 20217.674818 eV Total energy + Delta-G solvation = -3376.446434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58174 -38.35014 -36.44523 -35.29343 -34.11718 -31.82256 -31.57506 -30.31693 -29.40485 -28.03316 -25.18910 -24.26889 -22.69668 -21.99369 -20.94218 -20.37794 -19.31250 -17.75919 -16.93749 -16.02774 -15.54664 -14.87113 -14.80258 -14.66017 -14.55725 -13.93061 -13.83148 -13.49551 -13.24503 -13.16604 -12.87260 -12.66836 -12.28425 -12.12329 -12.01326 -11.89632 -11.58648 -11.43448 -11.26319 -11.17852 -10.88409 -10.63048 -10.54936 -10.40372 -10.38970 -10.25560 -10.02229 -9.75203 -9.08105 -8.58953 -8.35739 -8.10101 -7.46703 -6.48712 -4.27296 1.57229 2.01645 3.01224 3.12340 3.15262 3.76194 3.97429 4.43236 4.59102 4.69058 4.81873 4.92342 5.14296 5.18376 5.45506 5.46427 5.48058 5.53399 5.65677 5.68621 5.81929 5.97085 6.04899 6.07450 6.11624 6.23730 6.28385 6.36906 6.40844 6.47055 6.53779 6.66430 6.70441 6.83043 6.92878 7.04706 7.11506 7.25765 7.28898 7.37707 7.57661 7.64320 7.91418 8.28422 8.92428 9.40261 9.84035 10.52348 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.005191 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.934624 B = 5393.152290 C = 6709.431221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.127 3.873 5 N -0.433 5.433 6 C -0.334 4.334 7 H 0.087 0.913 8 C 0.044 3.956 9 N -0.857 5.857 10 Si 0.908 3.092 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.513 3.487 15 O -0.599 6.599 16 C -0.097 4.097 17 C -0.062 4.062 18 C -0.139 4.139 19 C -0.115 4.115 20 C 0.145 3.855 21 H 0.103 0.897 22 C -0.179 4.179 23 O -0.561 6.561 24 C -0.136 4.136 25 C -0.078 4.078 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.272 0.728 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.375 0.625 42 H 0.116 0.884 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 7.381 -0.261 7.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.463 4.463 7 H 0.105 0.895 8 C -0.163 4.163 9 N -0.492 5.492 10 Si 0.734 3.266 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.203 1.203 14 C 0.303 3.697 15 O -0.485 6.485 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.157 4.157 19 C -0.116 4.116 20 C 0.086 3.914 21 H 0.120 0.880 22 C -0.237 4.237 23 O -0.368 6.368 24 C -0.154 4.154 25 C -0.098 4.098 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.187 0.813 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.223 0.777 42 H 0.134 0.866 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.203 7.185 0.714 7.319 hybrid contribution 0.000 0.046 -1.528 1.528 sum -1.203 7.231 -0.814 7.375 Atomic orbital electron populations 1.21754 0.96656 1.00649 1.01487 1.21430 0.94993 0.97773 1.01532 1.21942 0.97895 0.95523 1.01589 1.21305 0.91046 0.84708 1.02540 1.43199 1.55272 1.11728 1.04840 1.19377 1.27778 1.03610 0.95516 0.89508 1.25588 0.94578 0.96245 0.99899 1.69856 1.26912 1.16505 1.35932 0.86142 0.78575 0.79568 0.82305 1.18883 1.20236 1.20284 1.18485 0.81885 0.85809 0.83518 1.90605 1.51934 1.71471 1.34496 1.20135 0.98515 0.95243 0.96129 1.22539 0.92038 0.96137 0.97254 1.20826 1.01139 0.95023 0.98736 1.20541 0.98106 0.96624 0.96340 1.20765 0.80919 0.91091 0.98604 0.87965 1.22476 1.01321 0.99431 1.00427 1.86569 1.25993 1.88124 1.36078 1.20668 0.98339 0.97167 0.99221 1.21202 0.98647 0.92529 0.97385 0.93052 0.93080 0.93445 0.92334 0.92413 0.92363 0.92468 0.88735 0.93221 0.91740 0.81306 0.86855 0.91379 0.91898 0.92019 0.77687 0.86577 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.13 -2.64 5.45 -26.73 -0.15 -2.78 16 4 C 0.13 2.97 4.75 -4.04 -0.02 2.95 16 5 N -0.43 -10.68 2.46 -115.92 -0.28 -10.96 16 6 C -0.33 -8.01 5.78 -15.00 -0.09 -8.09 16 7 H 0.09 2.07 7.36 -52.48 -0.39 1.68 16 8 C 0.04 1.04 4.34 -17.45 -0.08 0.96 16 9 N -0.86 -21.32 11.66 55.50 0.65 -20.67 16 10 Si 0.91 18.18 29.56 -169.99 -5.03 13.16 16 11 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.51 12.83 7.36 -12.38 -0.09 12.73 16 15 O -0.60 -16.06 15.94 5.28 0.08 -15.98 16 16 C -0.10 -2.14 5.62 -104.97 -0.59 -2.73 16 17 C -0.06 -1.27 8.23 -39.16 -0.32 -1.59 16 18 C -0.14 -2.36 9.31 -39.64 -0.37 -2.72 16 19 C -0.12 -1.79 5.01 -104.52 -0.52 -2.31 16 20 C 0.15 1.83 3.83 -27.89 -0.11 1.72 16 21 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 22 C -0.18 -1.90 9.52 37.16 0.35 -1.54 16 23 O -0.56 -7.41 13.13 -35.23 -0.46 -7.87 16 24 C -0.14 -2.18 9.66 -39.64 -0.38 -2.56 16 25 C -0.08 -1.50 9.59 -39.17 -0.38 -1.88 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.26 7.69 -51.93 -0.40 0.86 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 34 H 0.05 1.21 7.80 -51.93 -0.40 0.81 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.17 3.78 4.76 -52.49 -0.25 3.53 16 37 H 0.11 1.60 6.59 -52.49 -0.35 1.25 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.37 3.91 7.38 45.56 0.34 4.25 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.12 2.33 7.83 -52.49 -0.41 1.92 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -28.26 351.54 -8.23 -36.49 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.96 Total: 12.25 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.53 Total: -11.71 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.36 Total: -31.63 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.38 Total: -23.84 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.26 -8.23 -36.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192365073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.395 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds