Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.36872 * 119.99891 * 263.21433 * 5 4 3 7 7 H 1.08007 * 119.99741 * 131.35043 * 6 5 4 8 8 C 1.39041 * 120.00174 * 311.35111 * 6 5 4 9 9 N 1.31362 * 120.00058 * 351.01483 * 8 6 5 10 10 Si 1.86803 * 120.00174 * 171.01697 * 8 6 5 11 11 H 1.48501 * 109.47129 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47359 * 119.99587 * 10 8 6 13 13 H 1.48504 * 109.46926 * 240.00073 * 10 8 6 14 14 C 1.34773 * 119.99857 * 83.21247 * 5 4 3 15 15 O 1.21592 * 120.00022 * 349.90172 * 14 5 4 16 16 C 1.47734 * 119.99718 * 170.17152 * 14 5 4 17 17 C 1.39645 * 120.14943 * 336.00251 * 16 14 5 18 18 C 1.37944 * 119.84105 * 179.74080 * 17 16 14 19 19 C 1.38375 * 120.15266 * 0.51088 * 18 17 16 20 20 C 1.50692 * 119.84862 * 179.74326 * 19 18 17 21 21 H 1.09006 * 109.47218 * 205.02288 * 20 19 18 22 22 C 1.52997 * 109.47583 * 85.01960 * 20 19 18 23 23 O 1.42897 * 109.46944 * 325.01895 * 20 19 18 24 24 C 1.38381 * 120.30412 * 359.76366 * 19 18 17 25 25 C 1.37936 * 120.15141 * 359.97438 * 24 19 18 26 26 H 1.08997 * 109.47272 * 299.99945 * 1 2 3 27 27 H 1.09001 * 109.47280 * 60.00202 * 1 2 3 28 28 H 1.08998 * 109.47439 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47272 * 240.00055 * 2 1 3 30 30 H 1.09001 * 109.47280 * 119.99798 * 2 1 3 31 31 H 1.09002 * 109.47450 * 59.99930 * 3 2 1 32 32 H 1.09003 * 109.47384 * 300.00110 * 3 2 1 33 33 H 1.09005 * 109.47300 * 60.00356 * 4 3 2 34 34 H 1.09001 * 109.47280 * 299.99798 * 4 3 2 35 35 H 0.96999 * 120.00264 * 180.02562 * 9 8 6 36 36 H 1.07997 * 120.07656 * 359.97438 * 17 16 14 37 37 H 1.07995 * 119.91847 * 180.25362 * 18 17 16 38 38 H 1.09001 * 109.46801 * 60.00024 * 22 20 19 39 39 H 1.08992 * 109.47768 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47011 * 300.00665 * 22 20 19 41 41 H 0.96704 * 114.00035 * 60.00659 * 23 20 19 42 42 H 1.07999 * 119.92209 * 179.97438 * 24 19 18 43 43 H 1.08001 * 120.07586 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4190 3.4215 -1.1772 7 1 4.0478 4.4067 -1.4185 8 6 5.2632 2.7606 -2.0625 9 7 5.8549 1.6460 -1.6977 10 14 5.5560 3.4576 -3.7707 11 1 4.7782 4.7122 -3.9334 12 1 7.0022 3.7450 -3.9469 13 1 5.1197 2.4696 -4.7900 14 6 4.1524 3.5057 1.1587 15 8 3.6647 3.0487 2.1744 16 6 4.8429 4.8113 1.1933 17 6 5.8035 5.1225 0.2287 18 6 6.4405 6.3455 0.2639 19 6 6.1371 7.2589 1.2581 20 6 6.8413 8.5907 1.2935 21 1 6.8365 8.9773 2.3126 22 6 6.1184 9.5745 0.3713 23 8 8.1906 8.4278 0.8522 24 6 5.1903 6.9547 2.2204 25 6 4.5419 5.7376 2.1940 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9329 0.9288 0.8909 35 1 6.4441 1.1851 -2.3152 36 1 6.0444 4.4087 -0.5452 37 1 7.1806 6.5891 -0.4839 38 1 5.0891 9.6987 0.7079 39 1 6.6274 10.5379 0.3972 40 1 6.1232 9.1878 -0.6478 41 1 8.2713 8.0863 -0.0489 42 1 4.9586 7.6720 2.9939 43 1 3.8034 5.5013 2.9459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192365073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -92.158961 kcal Electronic energy + Delta-G solvation = -23594.827091 eV Core-core repulsion = 20217.674818 eV Total energy + Delta-G solvation = -3377.152273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16818 -39.85517 -37.69599 -37.11533 -35.69715 -33.48711 -32.97841 -31.73974 -30.68587 -29.47344 -27.03522 -25.62180 -24.10472 -23.42072 -22.27755 -21.91859 -21.08912 -19.40849 -18.15317 -17.80224 -17.01429 -16.42055 -16.29863 -16.07885 -15.92839 -15.64815 -15.31144 -14.86674 -14.72936 -14.46627 -14.13063 -14.01487 -13.85800 -13.64578 -13.40315 -13.14513 -12.97818 -12.91659 -12.83807 -12.72442 -12.16045 -12.07780 -12.01438 -11.95236 -11.82593 -11.73210 -11.44128 -11.11121 -10.92407 -10.46080 -9.79619 -9.57207 -9.36624 -8.32178 -6.16916 0.08660 0.58554 1.41453 1.46821 1.58740 2.07735 2.27875 2.87433 2.93501 3.16381 3.56977 3.69896 4.00802 4.04900 4.11461 4.15397 4.26669 4.30374 4.35296 4.37847 4.52017 4.62092 4.72690 4.82480 4.85816 4.87972 4.97009 5.00888 5.03822 5.11153 5.14636 5.22747 5.29041 5.33696 5.39901 5.41387 5.52120 5.53826 5.64762 5.78145 6.03146 6.12231 6.40379 6.78187 7.05491 7.49754 7.95141 8.70708 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.005191 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.934624 B = 5393.152290 C = 6709.431221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.130 3.870 5 N -0.442 5.442 6 C -0.341 4.341 7 H 0.085 0.915 8 C 0.011 3.989 9 N -0.891 5.891 10 Si 0.974 3.026 11 H -0.257 1.257 12 H -0.270 1.270 13 H -0.278 1.278 14 C 0.496 3.504 15 O -0.633 6.633 16 C -0.134 4.134 17 C -0.077 4.077 18 C -0.136 4.136 19 C -0.101 4.101 20 C 0.149 3.851 21 H 0.118 0.882 22 C -0.175 4.175 23 O -0.573 6.573 24 C -0.126 4.126 25 C -0.088 4.088 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.026 0.974 35 H 0.275 0.725 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.386 0.614 42 H 0.155 0.845 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 9.846 -1.204 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C 0.006 3.994 5 N -0.158 5.158 6 C -0.469 4.469 7 H 0.103 0.897 8 C -0.193 4.193 9 N -0.527 5.527 10 Si 0.797 3.203 11 H -0.180 1.180 12 H -0.195 1.195 13 H -0.204 1.204 14 C 0.287 3.713 15 O -0.523 6.523 16 C -0.137 4.137 17 C -0.095 4.095 18 C -0.154 4.154 19 C -0.102 4.102 20 C 0.090 3.910 21 H 0.136 0.864 22 C -0.232 4.232 23 O -0.381 6.381 24 C -0.143 4.143 25 C -0.107 4.107 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.236 0.764 42 H 0.172 0.828 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.850 9.654 -0.245 9.694 hybrid contribution -0.038 -0.661 -1.177 1.350 sum -0.888 8.993 -1.422 9.148 Atomic orbital electron populations 1.21709 0.94167 1.02380 1.01721 1.21409 0.97133 0.95007 1.01770 1.21799 0.95474 0.97940 1.00379 1.21267 0.93113 0.84317 1.00674 1.43443 1.55155 1.11971 1.05261 1.19469 1.28313 1.03725 0.95362 0.89696 1.26295 0.93725 0.96176 1.03096 1.69962 1.27603 1.17781 1.37311 0.85152 0.78696 0.79008 0.77465 1.18014 1.19498 1.20363 1.19141 0.81811 0.87229 0.83115 1.90544 1.53611 1.72697 1.35426 1.20059 1.00238 0.94766 0.98595 1.22290 0.92950 0.97420 0.96879 1.21096 1.00962 0.93623 0.99720 1.20997 0.96888 0.97598 0.94700 1.20879 0.80563 0.89390 1.00154 0.86433 1.22435 1.01506 0.99500 0.99748 1.86563 1.26144 1.88175 1.37185 1.21051 0.97161 0.96236 0.99893 1.21281 0.99255 0.93514 0.96657 0.93193 0.92508 0.90956 0.91721 0.92568 0.94285 0.92680 0.89800 0.95553 0.91513 0.83674 0.83911 0.90892 0.90245 0.92105 0.76376 0.82755 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.12 -3.87 5.93 30.59 0.18 -3.68 16 3 C -0.12 -4.94 5.45 30.59 0.17 -4.78 16 4 C 0.13 6.41 4.75 86.38 0.41 6.82 16 5 N -0.44 -22.99 2.46 -638.92 -1.57 -24.56 16 6 C -0.34 -16.88 5.78 84.10 0.49 -16.40 16 7 H 0.09 4.17 7.36 -2.91 -0.02 4.14 16 8 C 0.01 0.54 4.34 84.96 0.37 0.91 16 9 N -0.89 -45.65 11.66 21.68 0.25 -45.40 16 10 Si 0.97 37.17 29.56 68.60 2.03 39.20 16 11 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 12 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 13 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.50 26.27 7.36 86.75 0.64 26.90 16 15 O -0.63 -36.21 15.94 -4.01 -0.06 -36.27 16 16 C -0.13 -6.09 5.62 -20.09 -0.11 -6.20 16 17 C -0.08 -3.20 8.23 22.54 0.19 -3.02 16 18 C -0.14 -4.37 9.31 22.23 0.21 -4.16 16 19 C -0.10 -2.83 5.01 -19.80 -0.10 -2.93 16 20 C 0.15 3.13 3.83 29.84 0.11 3.25 16 21 H 0.12 2.19 8.05 -2.38 -0.02 2.17 16 22 C -0.17 -2.96 9.52 71.98 0.69 -2.28 16 23 O -0.57 -12.91 13.13 -148.98 -1.96 -14.87 16 24 C -0.13 -3.74 9.66 22.23 0.21 -3.52 16 25 C -0.09 -3.39 9.59 22.54 0.22 -3.17 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.77 7.69 -2.39 -0.02 1.75 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 4.29 6.07 -2.38 -0.01 4.27 16 34 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 35 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 36 H 0.15 6.71 4.76 -2.91 -0.01 6.69 16 37 H 0.14 3.63 6.59 -2.91 -0.02 3.61 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.39 6.60 7.38 -74.05 -0.55 6.06 16 42 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 43 H 0.12 4.58 7.83 -2.91 -0.02 4.56 16 Total: -1.00 -64.33 351.54 3.53 -60.81 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.46 Total: 36.49 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.38 Total: -15.40 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.32 Total: -69.96 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -2.02 Total: -51.14 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -64.33 3.53 -60.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192365073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.352 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds