Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 C 1.53000 * 109.46849 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99941 * 270.00168 * 5 4 3 7 7 C 1.50708 * 109.47367 * 270.00049 * 6 5 4 8 8 H 1.08001 * 119.99774 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00013 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99672 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00147 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47138 * 90.00622 * 11 9 7 13 13 H 1.48505 * 109.47255 * 210.00574 * 11 9 7 14 14 H 1.48497 * 109.47364 * 330.00231 * 11 9 7 15 15 C 1.34779 * 119.99656 * 90.00422 * 5 4 3 16 16 O 1.21511 * 120.00119 * 0.02562 * 15 5 4 17 17 O 1.34678 * 119.99704 * 179.97438 * 15 5 4 18 18 C 1.35935 * 117.00022 * 185.94702 * 17 15 5 19 19 C 1.38720 * 120.05720 * 249.99722 * 18 17 15 20 20 C 1.38146 * 119.94327 * 180.27873 * 19 18 17 21 21 C 1.38269 * 120.05642 * 359.50555 * 20 19 18 22 22 C 1.50694 * 119.94683 * 180.23246 * 21 20 19 23 23 C 1.38273 * 120.10484 * 0.47267 * 21 20 19 24 24 C 1.38142 * 120.05350 * 359.78566 * 23 21 20 25 25 H 1.09003 * 109.46782 * 59.99966 * 1 2 3 26 26 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47082 * 300.00596 * 1 2 3 28 28 H 1.08997 * 109.47414 * 239.99610 * 2 1 3 29 29 H 1.09005 * 109.46947 * 119.99519 * 2 1 3 30 30 H 1.08996 * 109.46986 * 60.00257 * 3 2 1 31 31 H 1.08996 * 109.46707 * 299.99807 * 3 2 1 32 32 H 1.09008 * 109.46920 * 60.00113 * 4 3 2 33 33 H 1.08994 * 109.47413 * 300.00118 * 4 3 2 34 34 H 1.08999 * 109.47520 * 30.00262 * 6 5 4 35 35 H 1.08999 * 109.46997 * 150.00276 * 6 5 4 36 36 H 0.97000 * 119.99565 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.02338 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97289 * 179.74212 * 20 19 18 39 39 H 1.08990 * 109.47443 * 270.23498 * 22 21 20 40 40 H 1.09000 * 109.46909 * 30.24046 * 22 21 20 41 41 H 1.08999 * 109.47126 * 150.23369 * 22 21 20 42 42 H 1.07994 * 119.96665 * 179.76611 * 23 21 20 43 43 H 1.08005 * 120.02314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7034 8 1 6.3832 2.6721 -1.0952 9 6 6.1905 3.8313 -2.8772 10 7 7.4327 3.6240 -3.2565 11 14 5.0547 4.8762 -3.9295 12 1 5.1572 6.2965 -3.5085 13 1 5.4487 4.7530 -5.3560 14 1 3.6550 4.4096 -3.7607 15 6 4.2826 3.4597 1.1670 16 8 4.0801 2.8873 2.2196 17 8 4.7320 4.7293 1.1664 18 6 5.0555 5.2700 2.3710 19 6 4.2670 6.2721 2.9170 20 6 4.6013 6.8239 4.1386 21 6 5.7149 6.3710 4.8217 22 6 6.0742 6.9711 6.1565 23 6 6.5022 5.3719 4.2796 24 6 6.1751 4.8207 3.0559 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 3.6225 3.1291 -2.0287 35 1 4.1360 4.5829 -1.1393 36 1 7.7590 4.0140 -4.0825 37 1 3.3954 6.6240 2.3853 38 1 3.9901 7.6071 4.5623 39 1 6.7349 7.8247 6.0051 40 1 5.1668 7.2993 6.6634 41 1 6.5809 6.2232 6.7665 42 1 7.3736 5.0225 4.8132 43 1 6.7906 4.0405 2.6327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194442028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = -61.561556 kcal Electronic energy + Delta-G solvation = -23260.680600 eV Core-core repulsion = 19884.855130 eV Total energy + Delta-G solvation = -3375.825470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73362 -38.81310 -37.06559 -35.50025 -34.35087 -32.46339 -31.97325 -30.87637 -29.32786 -27.67004 -26.43784 -23.86564 -22.81094 -22.64961 -21.57708 -20.91550 -19.79850 -17.55176 -17.11078 -17.05510 -16.14713 -15.52175 -15.18950 -14.96222 -14.64217 -14.29064 -13.80162 -13.76708 -13.65418 -13.35732 -13.28887 -12.73189 -12.53258 -12.44629 -12.28676 -11.95816 -11.87970 -11.50023 -11.37145 -11.24543 -11.12056 -10.98039 -10.80274 -10.68736 -10.39008 -10.30788 -10.22193 -9.93499 -9.60800 -8.83637 -8.68255 -8.28999 -7.92646 -6.17489 -4.18367 1.26686 1.50719 2.83641 3.22435 3.28904 3.30336 3.38829 3.88660 4.30974 4.55797 4.88692 4.91735 5.07866 5.10059 5.13524 5.14705 5.25153 5.32701 5.47452 5.50498 5.53344 5.68559 5.78908 5.82223 5.86415 5.88923 5.92585 6.03992 6.11755 6.11986 6.26059 6.37119 6.40136 6.45683 6.54541 6.61141 6.64627 6.72199 6.80332 7.20057 7.32735 7.46777 7.99124 8.39147 8.84257 8.97507 9.41585 10.95481 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.005475 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.534711 B = 5113.306737 C = 7132.560554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.135 3.865 5 N -0.569 5.569 6 C 0.211 3.789 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.650 3.350 16 O -0.583 6.583 17 O -0.292 6.292 18 C 0.115 3.885 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 1.974 11.888 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.013 3.987 5 N -0.305 5.305 6 C 0.090 3.910 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.127 4.127 10 N -0.530 5.530 11 Si 0.700 3.300 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.405 3.595 16 O -0.473 6.473 17 O -0.204 6.204 18 C 0.072 3.928 19 C -0.138 4.138 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.167 4.167 23 C -0.124 4.124 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.307 1.873 12.050 14.756 hybrid contribution -0.326 0.587 -0.866 1.096 sum -8.633 2.460 11.184 14.341 Atomic orbital electron populations 1.21753 0.96066 1.01206 1.01714 1.21435 0.95646 0.96623 1.02167 1.22030 0.96168 0.96947 1.02422 1.21419 0.92905 0.80798 1.03540 1.46827 1.65555 1.13505 1.04641 1.19857 0.97976 0.92778 0.80359 1.21327 0.95080 1.33511 1.07653 0.90515 1.24839 0.94966 0.95703 0.97166 1.69894 1.15105 1.44547 1.23500 0.86894 0.81554 0.81512 0.80050 1.19813 1.20909 1.18911 1.18208 0.76955 0.79633 0.84693 1.90929 1.58968 1.66557 1.30853 1.84405 1.77392 1.28420 1.30147 1.18386 0.94200 0.95213 0.84985 1.21089 0.99159 0.98133 0.95400 1.20792 0.97350 1.00250 0.94357 1.19917 0.95723 0.97069 0.97054 1.20748 1.01837 1.00695 0.93405 1.20851 0.99711 0.96703 0.95146 1.21407 0.96675 1.00183 0.94998 0.92834 0.92979 0.92919 0.91734 0.91898 0.91854 0.91723 0.89347 0.90401 0.94506 0.94650 0.92409 0.85330 0.85585 0.91254 0.91671 0.91612 0.85624 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.14 -2.06 5.54 -26.73 -0.15 -2.21 16 4 C 0.14 2.42 5.41 -4.04 -0.02 2.40 16 5 N -0.57 -12.21 2.46 -180.85 -0.44 -12.65 16 6 C 0.21 4.92 4.23 -5.19 -0.02 4.90 16 7 C -0.54 -14.77 9.94 -34.44 -0.34 -15.11 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 11 Si 0.87 20.52 27.47 -169.99 -4.67 15.85 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 15 C 0.65 14.48 8.18 54.06 0.44 14.92 16 16 O -0.58 -13.40 15.41 -19.28 -0.30 -13.69 16 17 O -0.29 -6.42 8.86 -24.73 -0.22 -6.64 16 18 C 0.11 2.20 5.25 -39.22 -0.21 2.00 16 19 C -0.12 -1.90 9.99 -39.44 -0.39 -2.29 16 20 C -0.11 -1.44 9.69 -39.60 -0.38 -1.83 16 21 C -0.10 -1.25 5.88 -104.60 -0.62 -1.87 16 22 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 23 C -0.11 -1.52 9.69 -39.60 -0.38 -1.90 16 24 C -0.11 -2.03 9.39 -39.44 -0.37 -2.40 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.54 8.07 -51.92 -0.42 1.12 16 33 H 0.08 1.40 7.42 -51.93 -0.39 1.02 16 34 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 35 H 0.04 0.84 6.80 -51.93 -0.35 0.48 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 37 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -31.81 362.76 -8.39 -40.20 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.03 Total: 2.14 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.97 Total: -4.85 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.33 Total: -38.48 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.52 Total: -20.33 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.81 -8.39 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194442028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds