Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 C 1.53000 * 109.46849 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.46494 * 119.99941 * 270.00168 * 5 4 3 7 7 C 1.50708 * 109.47367 * 270.00049 * 6 5 4 8 8 H 1.08001 * 119.99774 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00013 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99672 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00147 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47138 * 90.00622 * 11 9 7 13 13 H 1.48505 * 109.47255 * 210.00574 * 11 9 7 14 14 H 1.48497 * 109.47364 * 330.00231 * 11 9 7 15 15 C 1.34779 * 119.99656 * 90.00422 * 5 4 3 16 16 O 1.21511 * 120.00119 * 0.02562 * 15 5 4 17 17 O 1.34678 * 119.99704 * 179.97438 * 15 5 4 18 18 C 1.35935 * 117.00022 * 185.94702 * 17 15 5 19 19 C 1.38720 * 120.05720 * 249.99722 * 18 17 15 20 20 C 1.38146 * 119.94327 * 180.27873 * 19 18 17 21 21 C 1.38269 * 120.05642 * 359.50555 * 20 19 18 22 22 C 1.50694 * 119.94683 * 180.23246 * 21 20 19 23 23 C 1.38273 * 120.10484 * 0.47267 * 21 20 19 24 24 C 1.38142 * 120.05350 * 359.78566 * 23 21 20 25 25 H 1.09003 * 109.46782 * 59.99966 * 1 2 3 26 26 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47082 * 300.00596 * 1 2 3 28 28 H 1.08997 * 109.47414 * 239.99610 * 2 1 3 29 29 H 1.09005 * 109.46947 * 119.99519 * 2 1 3 30 30 H 1.08996 * 109.46986 * 60.00257 * 3 2 1 31 31 H 1.08996 * 109.46707 * 299.99807 * 3 2 1 32 32 H 1.09008 * 109.46920 * 60.00113 * 4 3 2 33 33 H 1.08994 * 109.47413 * 300.00118 * 4 3 2 34 34 H 1.08999 * 109.47520 * 30.00262 * 6 5 4 35 35 H 1.08999 * 109.46997 * 150.00276 * 6 5 4 36 36 H 0.97000 * 119.99565 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.02338 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97289 * 179.74212 * 20 19 18 39 39 H 1.08990 * 109.47443 * 270.23498 * 22 21 20 40 40 H 1.09000 * 109.46909 * 30.24046 * 22 21 20 41 41 H 1.08999 * 109.47126 * 150.23369 * 22 21 20 42 42 H 1.07994 * 119.96665 * 179.76611 * 23 21 20 43 43 H 1.08005 * 120.02314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7034 8 1 6.3832 2.6721 -1.0952 9 6 6.1905 3.8313 -2.8772 10 7 7.4327 3.6240 -3.2565 11 14 5.0547 4.8762 -3.9295 12 1 5.1572 6.2965 -3.5085 13 1 5.4487 4.7530 -5.3560 14 1 3.6550 4.4096 -3.7607 15 6 4.2826 3.4597 1.1670 16 8 4.0801 2.8873 2.2196 17 8 4.7320 4.7293 1.1664 18 6 5.0555 5.2700 2.3710 19 6 4.2670 6.2721 2.9170 20 6 4.6013 6.8239 4.1386 21 6 5.7149 6.3710 4.8217 22 6 6.0742 6.9711 6.1565 23 6 6.5022 5.3719 4.2796 24 6 6.1751 4.8207 3.0559 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 3.6225 3.1291 -2.0287 35 1 4.1360 4.5829 -1.1393 36 1 7.7590 4.0140 -4.0825 37 1 3.3954 6.6240 2.3853 38 1 3.9901 7.6071 4.5623 39 1 6.7349 7.8247 6.0051 40 1 5.1668 7.2993 6.6634 41 1 6.5809 6.2232 6.7665 42 1 7.3736 5.0225 4.8132 43 1 6.7906 4.0405 2.6327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194442028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -78.584754 kcal Electronic energy + Delta-G solvation = -23261.418781 eV Core-core repulsion = 19884.855130 eV Total energy + Delta-G solvation = -3376.563651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.29391 -40.15546 -38.50909 -37.13727 -35.74365 -34.47967 -33.06073 -32.06191 -30.82551 -29.37968 -27.52100 -25.13331 -24.69393 -23.92747 -22.83351 -22.04543 -21.26406 -19.23533 -19.11330 -18.75587 -17.66462 -16.88273 -16.41962 -16.33205 -16.17786 -15.90956 -15.27317 -14.85927 -14.76216 -14.57568 -14.51506 -14.37597 -13.99273 -13.72796 -13.64751 -13.35691 -13.02018 -12.84684 -12.64073 -12.59149 -12.47719 -12.39163 -12.14098 -12.04508 -11.90060 -11.75891 -11.73096 -11.60627 -11.45061 -10.82889 -10.03182 -9.69672 -9.47968 -8.34027 -6.41758 0.00163 0.31694 1.31331 1.38402 1.39056 1.48795 1.68110 2.31764 2.63061 2.99773 3.05636 3.80751 3.88025 3.94307 3.96413 3.97560 4.18859 4.29191 4.35729 4.38238 4.52364 4.59236 4.60316 4.70133 4.75583 4.79935 4.86987 4.89927 4.96605 5.00579 5.06504 5.09735 5.24691 5.28579 5.34619 5.36242 5.38737 5.43970 5.49418 5.55632 5.56794 5.98144 6.10455 6.37186 6.60221 7.18833 7.30904 8.82788 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.005475 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.534711 B = 5113.306737 C = 7132.560554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.129 3.871 5 N -0.574 5.574 6 C 0.222 3.778 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.018 3.982 10 N -0.943 5.943 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.234 1.234 15 C 0.644 3.356 16 O -0.598 6.598 17 O -0.309 6.309 18 C 0.065 3.935 19 C -0.126 4.126 20 C -0.102 4.102 21 C -0.087 4.087 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.141 4.141 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.270 0.730 37 H 0.140 0.860 38 H 0.167 0.833 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 3.615 12.946 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.163 4.163 4 C 0.009 3.991 5 N -0.310 5.310 6 C 0.101 3.899 7 C -0.582 4.582 8 H 0.044 0.956 9 C -0.180 4.180 10 N -0.582 5.582 11 Si 0.767 3.233 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.157 1.157 15 C 0.399 3.601 16 O -0.489 6.489 17 O -0.221 6.221 18 C 0.023 3.977 19 C -0.144 4.144 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.165 4.165 23 C -0.127 4.127 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.185 0.815 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.634 3.497 13.132 17.256 hybrid contribution 0.525 0.077 -1.018 1.148 sum -10.109 3.574 12.114 16.178 Atomic orbital electron populations 1.21731 0.94506 1.02370 1.01837 1.21434 0.96935 0.94505 1.02680 1.21927 0.93485 0.98951 1.01961 1.21654 0.95126 0.79117 1.03229 1.46966 1.65589 1.14561 1.03904 1.19637 0.95574 0.93189 0.81518 1.21479 0.96681 1.32797 1.07288 0.95569 1.25812 0.96640 0.96996 0.98601 1.70053 1.17539 1.46197 1.24412 0.85752 0.80549 0.79240 0.77730 1.19423 1.20322 1.15720 1.18427 0.76825 0.80098 0.84725 1.90881 1.59684 1.67080 1.31278 1.84394 1.77339 1.28059 1.32287 1.18898 0.96118 0.97335 0.85359 1.21352 0.99186 0.97325 0.96529 1.21294 0.97527 1.00238 0.92901 1.20457 0.94488 0.95424 0.98332 1.20851 1.03299 1.01289 0.91018 1.21177 1.00790 0.96916 0.93780 1.21417 0.96885 1.00854 0.96849 0.92441 0.91316 0.93094 0.90858 0.91834 0.93078 0.91290 0.89159 0.91181 0.92262 0.94558 0.92138 0.84207 0.81521 0.89611 0.89638 0.90518 0.83226 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.12 -2.71 5.93 30.60 0.18 -2.53 16 3 C -0.12 -3.68 5.54 30.60 0.17 -3.51 16 4 C 0.13 4.75 5.41 86.38 0.47 5.22 16 5 N -0.57 -25.45 2.46 -956.47 -2.35 -27.80 16 6 C 0.22 10.47 4.23 85.64 0.36 10.83 16 7 C -0.54 -31.14 9.94 25.60 0.25 -30.89 16 8 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.02 1.04 5.47 84.65 0.46 1.50 16 10 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 11 Si 0.95 42.02 27.47 68.60 1.88 43.91 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 14 H -0.23 -9.22 6.54 99.48 0.65 -8.57 16 15 C 0.64 30.11 8.18 129.79 1.06 31.17 16 16 O -0.60 -28.80 15.41 19.80 0.31 -28.50 16 17 O -0.31 -14.33 8.86 0.28 0.00 -14.32 16 18 C 0.06 2.59 5.25 22.50 0.12 2.71 16 19 C -0.13 -3.93 9.99 22.36 0.22 -3.71 16 20 C -0.10 -2.41 9.69 22.26 0.22 -2.20 16 21 C -0.09 -2.00 5.88 -19.85 -0.12 -2.12 16 22 C -0.11 -1.50 10.01 71.23 0.71 -0.79 16 23 C -0.11 -3.06 9.69 22.26 0.22 -2.85 16 24 C -0.14 -5.32 9.39 22.36 0.21 -5.11 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 3.23 8.07 -2.38 -0.02 3.21 16 33 H 0.07 2.65 7.42 -2.39 -0.02 2.63 16 34 H 0.06 2.54 7.13 -2.39 -0.02 2.52 16 35 H 0.04 1.72 6.80 -2.39 -0.02 1.70 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 41 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 42 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -73.47 362.76 6.31 -67.17 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.91 Total: 21.81 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.25 Total: -4.38 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.05 Total: -85.67 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: 0.31 Total: -42.82 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -73.47 6.31 -67.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194442028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.419 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds