Wall clock time and date at job start Tue Mar 31 2020 07:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.09003 * 109.47237 * 304.99518 * 3 2 1 5 5 C 1.53001 * 109.47457 * 64.99941 * 3 2 1 6 6 C 1.53003 * 109.46963 * 184.99998 * 3 2 1 7 7 O 1.45199 * 109.47298 * 174.99749 * 6 3 2 8 8 C 1.34658 * 117.00641 * 180.02562 * 7 6 3 9 9 O 1.21513 * 119.99612 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00876 * 180.02562 * 8 7 6 11 11 C 1.37195 * 119.99595 * 359.97438 * 10 8 7 12 12 H 1.07999 * 120.00263 * 322.58887 * 11 10 8 13 13 C 1.38883 * 120.00145 * 142.58905 * 11 10 8 14 14 N 1.31470 * 120.00059 * 158.99150 * 13 11 10 15 15 Si 1.86801 * 120.00136 * 338.98795 * 13 11 10 16 16 H 1.48502 * 109.47050 * 95.33061 * 15 13 11 17 17 H 1.48494 * 109.47259 * 215.33014 * 15 13 11 18 18 H 1.48497 * 109.46916 * 335.33493 * 15 13 11 19 19 C 1.46499 * 120.00822 * 179.97438 * 10 8 7 20 20 C 1.50699 * 109.47049 * 84.64664 * 19 10 8 21 21 C 1.38228 * 120.00397 * 271.31985 * 20 19 10 22 22 C 1.38235 * 120.00393 * 179.76692 * 21 20 19 23 23 C 1.38236 * 119.99737 * 0.50805 * 22 21 20 24 24 C 1.38239 * 120.00072 * 359.74599 * 23 22 21 25 25 C 1.38237 * 119.99464 * 91.59501 * 20 19 10 26 26 H 1.08996 * 109.46837 * 300.00184 * 1 2 3 27 27 H 1.09001 * 109.47228 * 60.00145 * 1 2 3 28 28 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47360 * 239.99834 * 2 1 3 30 30 H 1.09001 * 109.47228 * 119.99855 * 2 1 3 31 31 H 1.08996 * 109.46967 * 300.00086 * 5 3 2 32 32 H 1.08998 * 109.46599 * 60.00211 * 5 3 2 33 33 H 1.09001 * 109.46986 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47285 * 294.99721 * 6 3 2 35 35 H 1.09007 * 109.47362 * 55.00070 * 6 3 2 36 36 H 0.96995 * 120.00121 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47269 * 204.65333 * 19 10 8 38 38 H 1.09005 * 109.46670 * 324.65346 * 19 10 8 39 39 H 1.08003 * 119.99758 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00170 * 180.22679 * 22 21 20 41 41 H 1.07996 * 120.00282 * 179.72682 * 23 22 21 42 42 H 1.07994 * 120.00211 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00664 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 8 4.0391 2.8115 -0.2448 8 6 5.3684 2.9893 -0.3653 9 8 6.1119 2.0282 -0.3702 10 7 5.8745 4.2332 -0.4792 11 6 5.0351 5.3184 -0.4731 12 1 4.0736 5.2602 -0.9615 13 6 5.4218 6.4918 0.1613 14 7 4.8516 7.6318 -0.1607 15 14 6.7520 6.4503 1.4721 16 1 8.0636 6.7770 0.8569 17 1 6.4384 7.4469 2.5273 18 1 6.8117 5.0941 2.0739 19 6 7.3208 4.4266 -0.6097 20 6 7.7187 4.2800 -2.0558 21 6 8.0468 3.0353 -2.5597 22 6 8.4072 2.9001 -3.8873 23 6 8.4496 4.0113 -4.7086 24 6 8.1266 5.2569 -4.2034 25 6 7.7611 5.3912 -2.8770 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.9982 3.1544 1.3070 34 1 4.0029 0.9836 0.7596 35 1 3.8571 0.8800 -1.0114 36 1 5.1219 8.4514 0.2820 37 1 7.5871 5.4236 -0.2588 38 1 7.8426 3.6794 -0.0118 39 1 8.0183 2.1679 -1.9168 40 1 8.6599 1.9271 -4.2819 41 1 8.7354 3.9064 -5.7447 42 1 8.1602 6.1250 -4.8449 43 1 7.5095 6.3644 -2.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194794223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:59 Heat of formation + Delta-G solvation = -59.787769 kcal Electronic energy + Delta-G solvation = -23736.008193 eV Core-core repulsion = 20360.259640 eV Total energy + Delta-G solvation = -3375.748553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.67288 -38.59928 -37.02649 -35.51062 -34.56392 -32.16326 -30.98250 -30.36519 -29.89386 -26.78147 -25.88829 -24.86741 -23.14425 -22.00358 -21.14849 -19.90639 -19.73860 -18.04418 -16.82866 -16.10926 -15.86998 -15.53315 -15.22936 -14.74196 -14.64973 -14.44386 -14.24145 -13.49953 -13.40583 -12.94401 -12.90160 -12.69522 -12.48825 -12.22203 -12.04743 -11.90384 -11.81503 -11.47387 -11.35797 -11.06441 -10.80848 -10.67145 -10.55735 -10.50162 -10.36452 -10.21950 -9.97845 -9.71621 -9.60559 -8.99955 -8.39843 -8.27357 -7.92674 -6.45042 -4.05684 1.79440 1.92788 3.02088 3.20415 3.26186 3.30072 3.87531 4.12003 4.30524 4.84854 4.93959 4.96775 5.03091 5.34407 5.35230 5.36881 5.46130 5.49139 5.57498 5.62797 5.68529 5.79158 5.83972 5.88077 5.93609 6.01708 6.02886 6.09541 6.13294 6.15005 6.25210 6.25596 6.48817 6.50411 6.59255 6.63941 6.95400 6.97089 7.18376 7.26360 7.39207 7.52155 8.09645 8.31842 8.93325 9.28875 9.71266 10.66149 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.005665 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.115150 B = 4941.198812 C = 6374.578382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.080 0.920 5 C -0.147 4.147 6 C 0.091 3.909 7 O -0.348 6.348 8 C 0.622 3.378 9 O -0.622 6.622 10 N -0.447 5.447 11 C -0.329 4.329 12 H 0.107 0.893 13 C 0.066 3.934 14 N -0.861 5.861 15 Si 0.865 3.135 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.262 1.262 19 C 0.157 3.843 20 C -0.090 4.090 21 C -0.097 4.097 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.090 4.090 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.274 0.726 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -8.787 -2.277 9.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.098 0.902 5 C -0.204 4.204 6 C 0.015 3.985 7 O -0.262 6.262 8 C 0.378 3.622 9 O -0.517 6.517 10 N -0.175 5.175 11 C -0.456 4.456 12 H 0.125 0.875 13 C -0.140 4.140 14 N -0.496 5.496 15 Si 0.692 3.308 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.186 1.186 19 C 0.035 3.965 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.109 4.109 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.330 -8.870 -2.215 9.148 hybrid contribution 0.615 0.147 0.617 0.883 sum 0.284 -8.722 -1.598 8.872 Atomic orbital electron populations 1.21789 0.95523 1.01316 1.02186 1.21485 0.96109 0.95687 1.02129 1.21180 0.93393 0.96384 1.00016 0.90155 1.21844 1.00609 1.01963 0.95988 1.22773 0.93347 0.81119 1.01277 1.86341 1.23406 1.29899 1.86529 1.18120 0.80682 0.84487 0.78947 1.90793 1.59430 1.40537 1.60978 1.42499 1.04645 1.03114 1.67213 1.19093 1.01827 0.89082 1.35563 0.87524 1.25282 0.97342 0.94924 0.96475 1.69769 1.42489 0.98026 1.39349 0.87137 0.81594 0.79105 0.82940 1.19890 1.21163 1.18581 1.20583 0.81727 1.01823 0.92379 1.20294 0.98384 0.93473 0.96995 1.21264 0.97416 0.97381 0.95474 1.21048 1.01819 0.98179 0.94139 1.21037 1.01297 0.93084 0.99136 1.21068 1.00969 0.97219 0.95574 1.21179 0.97166 0.99040 0.93471 0.92315 0.92639 0.92934 0.91887 0.91827 0.92766 0.93115 0.91144 0.92225 0.92351 0.91535 0.89997 0.90426 0.85355 0.86762 0.86868 0.86534 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.12 -1.31 5.40 -26.73 -0.14 -1.45 16 3 C -0.09 -1.30 2.63 -90.62 -0.24 -1.54 16 4 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.15 -2.08 8.85 37.16 0.33 -1.75 16 6 C 0.09 1.60 4.85 37.16 0.18 1.78 16 7 O -0.35 -7.87 8.90 -40.37 -0.36 -8.23 16 8 C 0.62 15.23 8.30 54.05 0.45 15.68 16 9 O -0.62 -15.30 14.44 -19.28 -0.28 -15.57 16 10 N -0.45 -11.14 2.18 -121.52 -0.27 -11.40 16 11 C -0.33 -8.84 9.38 -14.91 -0.14 -8.98 16 12 H 0.11 3.12 7.89 -52.49 -0.41 2.71 16 13 C 0.07 1.75 5.30 -17.47 -0.09 1.66 16 14 N -0.86 -23.70 13.96 55.49 0.77 -22.93 16 15 Si 0.87 20.19 24.95 -169.99 -4.24 15.95 16 16 H -0.27 -5.98 6.68 56.52 0.38 -5.60 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.26 -6.22 7.11 56.52 0.40 -5.81 16 19 C 0.16 3.52 4.09 -5.19 -0.02 3.50 16 20 C -0.09 -1.86 5.42 -104.63 -0.57 -2.43 16 21 C -0.10 -1.85 9.35 -39.59 -0.37 -2.22 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 24 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.09 -1.76 9.70 -39.58 -0.38 -2.14 16 26 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 1.85 3.36 -51.93 -0.17 1.68 16 38 H 0.08 1.68 7.54 -51.93 -0.39 1.29 16 39 H 0.13 2.51 7.06 -52.48 -0.37 2.14 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -29.34 350.87 -7.59 -36.92 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.67 Total: 6.49 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.83 Total: -6.51 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.51 Total: -34.33 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.64 Total: -23.81 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.24 Total: 15.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.34 -7.59 -36.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194794223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds