Wall clock time and date at job start Tue Mar 31 2020 07:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.09003 * 109.47237 * 304.99518 * 3 2 1 5 5 C 1.53001 * 109.47457 * 64.99941 * 3 2 1 6 6 C 1.53003 * 109.46963 * 184.99998 * 3 2 1 7 7 O 1.45199 * 109.47298 * 174.99749 * 6 3 2 8 8 C 1.34658 * 117.00641 * 180.02562 * 7 6 3 9 9 O 1.21513 * 119.99612 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00876 * 180.02562 * 8 7 6 11 11 C 1.37195 * 119.99595 * 359.97438 * 10 8 7 12 12 H 1.07999 * 120.00263 * 322.58887 * 11 10 8 13 13 C 1.38883 * 120.00145 * 142.58905 * 11 10 8 14 14 N 1.31470 * 120.00059 * 158.99150 * 13 11 10 15 15 Si 1.86801 * 120.00136 * 338.98795 * 13 11 10 16 16 H 1.48502 * 109.47050 * 95.33061 * 15 13 11 17 17 H 1.48494 * 109.47259 * 215.33014 * 15 13 11 18 18 H 1.48497 * 109.46916 * 335.33493 * 15 13 11 19 19 C 1.46499 * 120.00822 * 179.97438 * 10 8 7 20 20 C 1.50699 * 109.47049 * 84.64664 * 19 10 8 21 21 C 1.38228 * 120.00397 * 271.31985 * 20 19 10 22 22 C 1.38235 * 120.00393 * 179.76692 * 21 20 19 23 23 C 1.38236 * 119.99737 * 0.50805 * 22 21 20 24 24 C 1.38239 * 120.00072 * 359.74599 * 23 22 21 25 25 C 1.38237 * 119.99464 * 91.59501 * 20 19 10 26 26 H 1.08996 * 109.46837 * 300.00184 * 1 2 3 27 27 H 1.09001 * 109.47228 * 60.00145 * 1 2 3 28 28 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47360 * 239.99834 * 2 1 3 30 30 H 1.09001 * 109.47228 * 119.99855 * 2 1 3 31 31 H 1.08996 * 109.46967 * 300.00086 * 5 3 2 32 32 H 1.08998 * 109.46599 * 60.00211 * 5 3 2 33 33 H 1.09001 * 109.46986 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47285 * 294.99721 * 6 3 2 35 35 H 1.09007 * 109.47362 * 55.00070 * 6 3 2 36 36 H 0.96995 * 120.00121 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47269 * 204.65333 * 19 10 8 38 38 H 1.09005 * 109.46670 * 324.65346 * 19 10 8 39 39 H 1.08003 * 119.99758 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00170 * 180.22679 * 22 21 20 41 41 H 1.07996 * 120.00282 * 179.72682 * 23 22 21 42 42 H 1.07994 * 120.00211 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00664 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 8 4.0391 2.8115 -0.2448 8 6 5.3684 2.9893 -0.3653 9 8 6.1119 2.0282 -0.3702 10 7 5.8745 4.2332 -0.4792 11 6 5.0351 5.3184 -0.4731 12 1 4.0736 5.2602 -0.9615 13 6 5.4218 6.4918 0.1613 14 7 4.8516 7.6318 -0.1607 15 14 6.7520 6.4503 1.4721 16 1 8.0636 6.7770 0.8569 17 1 6.4384 7.4469 2.5273 18 1 6.8117 5.0941 2.0739 19 6 7.3208 4.4266 -0.6097 20 6 7.7187 4.2800 -2.0558 21 6 8.0468 3.0353 -2.5597 22 6 8.4072 2.9001 -3.8873 23 6 8.4496 4.0113 -4.7086 24 6 8.1266 5.2569 -4.2034 25 6 7.7611 5.3912 -2.8770 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.9982 3.1544 1.3070 34 1 4.0029 0.9836 0.7596 35 1 3.8571 0.8800 -1.0114 36 1 5.1219 8.4514 0.2820 37 1 7.5871 5.4236 -0.2588 38 1 7.8426 3.6794 -0.0118 39 1 8.0183 2.1679 -1.9168 40 1 8.6599 1.9271 -4.2819 41 1 8.7354 3.9064 -5.7447 42 1 8.1602 6.1250 -4.8449 43 1 7.5095 6.3644 -2.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194794223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:59 Heat of formation + Delta-G solvation = -74.512529 kcal Electronic energy + Delta-G solvation = -23736.646707 eV Core-core repulsion = 20360.259640 eV Total energy + Delta-G solvation = -3376.387066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46744 -40.06873 -38.48317 -37.07776 -36.32038 -34.14510 -32.55227 -31.74248 -30.95333 -28.17989 -27.54646 -26.73218 -24.28318 -23.39674 -22.61952 -21.63396 -20.98614 -19.95266 -18.56061 -17.84699 -17.53668 -17.18357 -16.93577 -16.18246 -15.93374 -15.90421 -15.52812 -15.03416 -14.90448 -14.47545 -14.40392 -14.22678 -14.00914 -13.77853 -13.46953 -13.26571 -12.95369 -12.93230 -12.81624 -12.51097 -12.43098 -12.07661 -12.00371 -11.86247 -11.72277 -11.61534 -11.53544 -11.43672 -11.31333 -10.95545 -9.91397 -9.77936 -9.69068 -8.52616 -6.16667 0.38094 0.53969 1.15067 1.28007 1.38178 1.62995 1.95708 2.14283 2.80677 2.99738 3.46057 3.81389 3.83593 3.88870 3.91713 4.09478 4.17984 4.26559 4.31590 4.35199 4.36625 4.43102 4.58630 4.65111 4.71380 4.74051 4.76972 4.82832 5.03839 5.10245 5.10928 5.18232 5.20014 5.21899 5.28073 5.42633 5.52969 5.58493 5.60328 5.62261 5.79609 6.07706 6.15539 6.18933 6.88730 7.25645 7.77156 8.62538 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.005665 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.115150 B = 4941.198812 C = 6374.578382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.086 4.086 4 H 0.071 0.929 5 C -0.144 4.144 6 C 0.084 3.916 7 O -0.366 6.366 8 C 0.616 3.384 9 O -0.627 6.627 10 N -0.455 5.455 11 C -0.333 4.333 12 H 0.069 0.931 13 C 0.034 3.966 14 N -0.894 5.894 15 Si 0.919 3.081 16 H -0.249 1.249 17 H -0.278 1.278 18 H -0.270 1.270 19 C 0.155 3.845 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.112 4.112 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.281 0.719 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -10.090 -3.274 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.104 4.104 4 H 0.090 0.910 5 C -0.201 4.201 6 C 0.009 3.991 7 O -0.280 6.280 8 C 0.372 3.628 9 O -0.524 6.524 10 N -0.183 5.183 11 C -0.460 4.460 12 H 0.087 0.913 13 C -0.170 4.170 14 N -0.531 5.531 15 Si 0.743 3.257 16 H -0.175 1.175 17 H -0.204 1.204 18 H -0.194 1.194 19 C 0.034 3.966 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.131 4.131 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.419 -10.180 -3.218 10.684 hybrid contribution 0.341 0.484 0.826 1.016 sum 0.760 -9.696 -2.392 10.015 Atomic orbital electron populations 1.21783 0.94001 1.02549 1.02269 1.21468 0.97303 0.93107 1.02896 1.21230 0.90776 0.98722 0.99706 0.91042 1.21813 1.02150 0.99837 0.96281 1.23171 0.95563 0.78953 1.01399 1.86356 1.22485 1.32937 1.86201 1.18300 0.81327 0.84422 0.78783 1.90763 1.59759 1.40503 1.61342 1.42605 1.05444 1.02714 1.67547 1.18749 1.01264 0.90121 1.35900 0.91291 1.25767 0.99424 0.94214 0.97600 1.69831 1.44197 0.98705 1.40381 0.86278 0.80296 0.78658 0.80434 1.17487 1.20389 1.19430 1.20626 0.80264 1.01432 0.94281 1.20196 1.00538 0.94763 0.96099 1.21261 0.98587 0.96236 0.96932 1.21429 1.00193 1.00187 0.92856 1.21511 0.99042 0.91863 1.00899 1.21413 0.99596 0.99121 0.94457 1.21186 0.98815 0.98000 0.95070 0.92047 0.92787 0.91137 0.91317 0.90919 0.90363 0.92266 0.94652 0.92047 0.92157 0.90892 0.90497 0.90294 0.86530 0.83569 0.82610 0.83768 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.11 -2.29 5.40 30.59 0.17 -2.12 16 3 C -0.09 -2.43 2.63 -10.79 -0.03 -2.46 16 4 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.14 -4.05 8.85 71.98 0.64 -3.42 16 6 C 0.08 3.02 4.85 71.98 0.35 3.37 16 7 O -0.37 -17.27 8.90 -55.67 -0.50 -17.76 16 8 C 0.62 31.17 8.30 129.79 1.08 32.24 16 9 O -0.63 -31.47 14.44 19.80 0.29 -31.19 16 10 N -0.46 -23.47 2.18 -768.78 -1.68 -25.14 16 11 C -0.33 -18.75 9.38 84.01 0.79 -17.96 16 12 H 0.07 4.32 7.89 -2.91 -0.02 4.30 16 13 C 0.03 1.85 5.30 84.90 0.45 2.30 16 14 N -0.89 -50.57 13.96 21.65 0.30 -50.27 16 15 Si 0.92 42.22 24.95 68.60 1.71 43.93 16 16 H -0.25 -10.50 6.68 99.48 0.66 -9.84 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 19 C 0.15 7.13 4.09 85.63 0.35 7.48 16 20 C -0.11 -4.79 5.42 -19.87 -0.11 -4.90 16 21 C -0.11 -4.20 9.35 22.27 0.21 -3.99 16 22 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 23 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 24 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 25 C -0.11 -4.37 9.70 22.27 0.22 -4.16 16 26 H 0.06 1.02 6.56 -2.39 -0.02 1.00 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.80 6.56 -2.39 -0.02 1.79 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.08 3.53 3.36 -2.39 -0.01 3.52 16 38 H 0.08 3.51 7.54 -2.38 -0.02 3.49 16 39 H 0.12 4.59 7.06 -2.91 -0.02 4.57 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -65.57 350.87 6.54 -59.03 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.94 Total: 27.17 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.47 Total: -5.76 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.38 Total: -75.41 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.21 Total: -48.95 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.71 Total: 43.93 kcal Total: -65.57 6.54 -59.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194794223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.486 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds