Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46927 * 2 1 4 4 C 1.52996 * 109.47104 * 239.99502 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99383 * 2 1 3 6 6 C 1.34639 * 117.00072 * 60.00793 * 5 2 1 7 7 O 1.21514 * 120.00077 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00071 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99803 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46954 * 179.97438 * 9 8 6 11 11 C 1.38232 * 120.00190 * 90.00114 * 10 9 8 12 12 C 1.38237 * 120.00019 * 180.02562 * 11 10 9 13 13 C 1.38231 * 119.99929 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99766 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47151 * 90.00279 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27762 * 15 14 13 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 C 1.38233 * 120.00119 * 0.25187 * 13 12 11 24 24 C 1.38232 * 119.99735 * 359.49690 * 23 13 12 25 25 H 1.08999 * 109.47152 * 300.00201 * 1 2 3 26 26 H 1.08998 * 109.47041 * 60.00696 * 1 2 3 27 27 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46870 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46972 * 299.99512 * 3 2 1 30 30 H 1.08999 * 109.47368 * 59.99931 * 3 2 1 31 31 H 1.09001 * 109.47192 * 299.99924 * 4 2 1 32 32 H 1.08993 * 109.47109 * 60.00388 * 4 2 1 33 33 H 1.09005 * 109.47143 * 180.02562 * 4 2 1 34 34 H 0.97001 * 120.00262 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47589 * 59.99693 * 9 8 6 36 36 H 1.09004 * 109.47274 * 299.99126 * 9 8 6 37 37 H 1.08005 * 119.99795 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.99517 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47088 * 329.99418 * 14 13 12 40 40 H 1.09007 * 109.46560 * 209.99923 * 14 13 12 41 41 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.00409 * 179.72430 * 23 13 12 43 43 H 1.08010 * 120.00077 * 180.22689 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4169 9 6 1.6740 -4.0667 2.5834 10 6 2.2661 -4.6067 3.8597 11 6 1.5609 -4.5085 5.0446 12 6 2.1043 -5.0034 6.2154 13 6 3.3527 -5.5970 6.2011 14 6 3.9453 -6.1360 7.4776 15 6 3.5401 -7.5772 7.6502 16 1 2.9156 -8.0549 6.9098 17 6 3.9616 -8.2839 8.7564 18 7 3.6035 -9.5401 8.9099 19 14 5.0413 -7.4575 10.0373 20 1 4.1853 -6.8276 11.0744 21 1 5.9220 -8.4714 10.6712 22 1 5.8751 -6.4164 9.3845 23 6 4.0598 -5.6910 5.0171 24 6 3.5142 -5.2008 3.8455 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7217 -1.2489 34 1 2.6281 -2.2368 3.0828 35 1 2.0397 -4.6499 1.7384 36 1 0.5871 -4.1355 2.6292 37 1 0.5858 -4.0444 5.0557 38 1 1.5535 -4.9263 7.1412 39 1 3.5802 -5.5521 8.3226 40 1 5.0322 -6.0671 7.4309 41 1 3.9003 -10.0375 9.6879 42 1 5.0371 -6.1507 5.0068 43 1 4.0652 -5.2775 2.9196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = -73.576361 kcal Electronic energy + Delta-G solvation = -22336.078895 eV Core-core repulsion = 18959.732424 eV Total energy + Delta-G solvation = -3376.346471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87859 -39.11397 -37.48379 -35.17385 -34.24619 -33.25474 -31.62420 -30.47530 -28.67123 -27.68547 -27.62955 -25.58178 -22.79673 -22.23512 -21.90248 -20.34837 -19.97111 -18.37488 -16.83998 -16.81305 -16.36914 -15.82569 -15.16378 -15.12822 -14.82528 -14.54678 -14.29926 -14.11270 -13.64054 -13.13386 -12.95554 -12.87872 -12.76153 -12.39832 -12.38215 -12.15778 -12.15738 -11.86657 -11.74303 -11.58725 -11.55946 -11.27661 -10.75671 -10.57168 -10.38903 -10.23384 -10.09359 -10.02151 -9.44734 -9.25335 -8.64017 -8.46554 -7.99184 -6.12746 -4.12744 1.55670 1.87490 2.30018 2.75076 3.24361 3.32647 3.34486 4.03382 4.35723 4.36247 4.45102 4.49344 4.63642 4.81146 5.11331 5.18247 5.19763 5.26048 5.32661 5.38016 5.40864 5.49287 5.51919 5.59212 5.66285 5.70385 5.75902 6.00208 6.03268 6.03301 6.07451 6.23207 6.40281 6.42206 6.45983 6.84481 6.90230 6.92780 6.94264 7.35970 7.46924 7.48140 7.63744 8.28777 8.42797 8.91974 9.46857 11.00025 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.042092 B = 0.002453 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.052281 B =11412.505403 C =11586.552675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.648 3.352 7 O -0.572 6.572 8 N -0.704 5.704 9 C 0.188 3.812 10 C -0.147 4.147 11 C -0.097 4.097 12 C -0.125 4.125 13 C -0.014 4.014 14 C 0.011 3.989 15 C -0.515 4.515 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.025 0.975 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.121 0.879 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 20.248 -16.476 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.462 6.462 8 N -0.363 5.363 9 C 0.066 3.934 10 C -0.148 4.148 11 C -0.116 4.116 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.026 4.026 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.143 4.143 24 C -0.116 4.116 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.234 19.878 -16.834 26.248 hybrid contribution 0.730 0.342 1.043 1.318 sum -2.503 20.220 -15.791 25.777 Atomic orbital electron populations 1.22517 0.94030 1.05134 1.02385 1.22043 0.94358 0.91484 0.82203 1.21862 1.02267 0.92615 1.03060 1.22515 1.01553 1.03580 0.96416 1.86311 1.71641 1.23832 1.46360 1.18140 0.78983 0.80416 0.82383 1.90892 1.41366 1.70473 1.43444 1.45016 1.55226 1.12665 1.23400 1.20108 0.99505 0.78313 0.95444 1.19491 0.96493 1.04770 0.93999 1.20949 0.99075 0.99377 0.92174 1.21085 0.95840 0.99431 0.97982 1.20397 0.93289 0.91148 0.96620 1.18864 0.96310 0.97234 0.90187 1.20894 1.32760 0.93304 1.08321 0.90780 1.25006 0.95773 0.94728 0.97747 1.69899 1.45511 1.08876 1.29329 0.86797 0.81103 0.79566 0.81987 1.20141 1.21201 1.18941 1.21082 1.00709 1.00460 0.92064 1.20949 0.94587 0.98051 0.97981 0.92197 0.91238 0.89303 0.91474 0.90212 0.91470 0.89306 0.91236 0.92194 0.75775 0.90687 0.90685 0.86694 0.86062 0.95714 0.95276 0.92527 0.86060 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 2 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 5 O -0.37 -4.23 9.94 -40.32 -0.40 -4.63 16 6 C 0.65 8.27 8.06 54.06 0.44 8.70 16 7 O -0.57 -8.37 11.88 -19.28 -0.23 -8.60 16 8 N -0.70 -8.15 5.55 -66.46 -0.37 -8.51 16 9 C 0.19 2.28 5.80 -5.19 -0.03 2.25 16 10 C -0.15 -2.05 5.25 -104.62 -0.55 -2.59 16 11 C -0.10 -1.44 9.70 -39.58 -0.38 -1.83 16 12 C -0.13 -2.21 9.70 -39.58 -0.38 -2.60 16 13 C -0.01 -0.28 5.07 -104.62 -0.53 -0.81 16 14 C 0.01 0.26 4.17 -29.03 -0.12 0.13 16 15 C -0.51 -14.25 9.65 -34.44 -0.33 -14.58 16 16 H 0.07 2.26 7.98 -52.49 -0.42 1.84 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 19 Si 0.88 20.91 27.46 -169.99 -4.67 16.24 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.01 6.55 56.52 0.37 -5.64 16 23 C -0.13 -2.21 9.70 -39.59 -0.38 -2.59 16 24 C -0.10 -1.44 9.70 -39.58 -0.38 -1.82 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 4.24 8.57 -40.82 -0.35 3.89 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 39 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 40 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -30.91 355.23 -8.25 -39.16 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.80 Total: 3.34 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.91 Total: -16.03 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.40 Total: -34.83 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.63 Total: -13.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.91 -8.25 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.418 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds